Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2_.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00195/0.00195, allocations: 92.7 kB / 19.44 MB, free: 324 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002426/0.002426, allocations: 161.3 kB / 22.75 MB, free: 1.656 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.529/1.529, allocations: 177.1 MB / 203.1 MB, free: 5.617 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1406/0.1406, allocations: 17.45 MB / 277 MB, free: 11.6 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2_,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2_")
translateModel(Chemical.Examples.debug.EnzymeKinetics2_,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2_") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.492e-06/1.492e-06, allocations: 0 / 352.8 MB, free: 10.21 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.882e-05/3.032e-05, allocations: 2.312 kB / 352.8 MB, free: 10.21 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Boundaries.mo:1343:7-1343:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Boundaries.mo:1343:7-1343:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Boundaries.mo:1361:7-1361:76:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Boundaries.mo:1361:7-1361:76:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2_): time 0.04995/0.04998, allocations: 32.17 MB / 385 MB, free: 10.16 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02256/0.07254, allocations: 10.13 MB / 395.1 MB, free: 15.98 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003539/0.07608, allocations: 83.31 kB / 395.2 MB, free: 15.9 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006816/0.0829, allocations: 1.927 MB / 397.1 MB, free: 13.96 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.005908/0.08881, allocations: 1.544 MB / 398.7 MB, free: 12.41 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01157/0.1004, allocations: 4.08 MB / 402.7 MB, free: 8.312 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.007964/0.1083, allocations: 3.619 MB / 406.4 MB, free: 4.676 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001899/0.1102, allocations: 0.5506 MB / 406.9 MB, free: 4.078 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.005455/0.1157, allocations: 2.05 MB / 409 MB, free: 2.023 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.003979/0.1197, allocations: 1.629 MB / 410.6 MB, free: 400 kB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001174/0.1208, allocations: 312 kB / 410.9 MB, free: 88 kB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.1655/0.2863, allocations: 2.047 MB / 412.9 MB, free: 37.37 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.00141/0.2877, allocations: 1.095 MB / 414 MB, free: 37.37 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002697/0.2904, allocations: 1.154 MB / 415.2 MB, free: 37.37 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.009729/0.3002, allocations: 6.275 MB / 421.5 MB, free: 37.02 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 7.213e-06/0.3002, allocations: 0 / 421.5 MB, free: 37.02 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.453e-06/0.3002, allocations: 0 / 421.5 MB, free: 37.02 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001593/0.3003, allocations: 2.734 kB / 421.5 MB, free: 37.02 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 960
 * Number of variables: 960
Notification: Performance of Generate backend data structure: time 0.01017/0.3105, allocations: 4.339 MB / 425.8 MB, free: 35.25 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.92e-05/0.3106, allocations: 9.656 kB / 425.8 MB, free: 35.25 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003641/0.3142, allocations: 1.767 MB / 427.6 MB, free: 34.61 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.003026/0.3172, allocations: 2.026 MB / 429.6 MB, free: 33.54 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003192/0.3175, allocations: 0.514 MB / 430.1 MB, free: 33.12 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003763/0.3179, allocations: 296.8 kB / 430.4 MB, free: 33.03 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01161/0.3295, allocations: 11.93 MB / 442.3 MB, free: 25.88 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 5.379e-05/0.3296, allocations: 2.844 kB / 442.4 MB, free: 25.88 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0002273/0.3298, allocations: 120.8 kB / 442.5 MB, free: 25.77 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003735/0.3302, allocations: 473.6 kB / 442.9 MB, free: 25.31 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0174/0.3476, allocations: 21.04 MB / 464 MB, free: 4.328 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.04309/0.3907, allocations: 20.76 MB / 484.7 MB, free: 15.85 MB / 362.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.006286/0.3969, allocations: 2.713 MB / 487.4 MB, free: 13.14 MB / 362.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.004602/0.4015, allocations: 2.259 MB / 489.7 MB, free: 10.88 MB / 362.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.02947/0.431, allocations: 12.83 MB / 0.4908 GB, free: 14.14 MB / 378.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.265e-05/0.4311, allocations: 43.88 kB / 0.4908 GB, free: 14.09 MB / 378.7 MB
Notification: Performance of pre-optimization done (n=188): time 4.789e-06/0.4311, allocations: 0 / 0.4908 GB, free: 14.09 MB / 378.7 MB
Error: Internal error It is not possible to select continuous time states because Number of Equations 58 greater than number of States 57 to select from.
Error: Internal error Selection of DummyDerivatives failed due to negative system rank of -1!
           There are 31 unassigned equations and 30 potential states.
Error: Internal error - IndexReduction.selectDummyDerivatives2new failed!
Error: Internal error - IndexReduction.processComps4New failed!
Error: Internal error - IndexReduction.dynamicStateSelectionWork failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.868895501946099]