Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.debug.EnzymeKinetics2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001439/0.001439, allocations: 88.72 kB / 19.44 MB, free: 356 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001723/0.001723, allocations: 157.7 kB / 22.75 MB, free: 1.684 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.511/1.511, allocations: 177.1 MB / 203.1 MB, free: 5.586 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1462/0.1462, allocations: 17.45 MB / 277 MB, free: 11.58 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2")
translateModel(Chemical.Examples.debug.EnzymeKinetics2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.debug.EnzymeKinetics2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 4.138e-06/4.138e-06, allocations: 3.984 kB / 352.8 MB, free: 10.2 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.147e-05/3.561e-05, allocations: 9.203 kB / 352.8 MB, free: 10.19 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1586:5-1586:64:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.debug.EnzymeKinetics2): time 0.0567/0.05673, allocations: 35.19 MB / 388 MB, free: 7.105 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02514/0.08187, allocations: 10.88 MB / 398.9 MB, free: 12.18 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.004183/0.08606, allocations: 111.1 kB / 399 MB, free: 12.07 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.007197/0.09325, allocations: 2.078 MB / 401.1 MB, free: 9.98 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.008283/0.1015, allocations: 1.963 MB / 403 MB, free: 8.004 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01145/0.113, allocations: 4.294 MB / 407.3 MB, free: 3.691 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.19/0.303, allocations: 4.784 MB / 412.1 MB, free: 34.19 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002205/0.3052, allocations: 0.8171 MB / 412.9 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.005905/0.3111, allocations: 2.631 MB / 415.6 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004587/0.3157, allocations: 2.089 MB / 417.7 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0009635/0.3167, allocations: 406.4 kB / 418.1 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.006248/0.3229, allocations: 2.144 MB / 420.2 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001501/0.3244, allocations: 1.377 MB / 421.6 MB, free: 33.96 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.002714/0.3271, allocations: 1.499 MB / 423.1 MB, free: 33.84 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01021/0.3373, allocations: 7.48 MB / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.851e-06/0.3373, allocations: 0 / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.964e-06/0.3373, allocations: 0 / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001837/0.3375, allocations: 0 / 430.6 MB, free: 31.89 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1270
 * Number of variables: 1270
Notification: Performance of Generate backend data structure: time 0.01106/0.3486, allocations: 5.419 MB / 436 MB, free: 28.49 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 4.661e-05/0.3486, allocations: 15.73 kB / 436 MB, free: 28.49 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.004257/0.3529, allocations: 2.235 MB / 438.2 MB, free: 27.43 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.004315/0.3572, allocations: 2.587 MB / 440.8 MB, free: 25.67 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0004377/0.3576, allocations: 0.6407 MB / 441.4 MB, free: 25.07 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0004555/0.3581, allocations: 397.4 kB / 441.8 MB, free: 24.7 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01711/0.3752, allocations: 15.38 MB / 457.2 MB, free: 9.352 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0001201/0.3753, allocations: 3.656 kB / 457.2 MB, free: 9.352 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0007046/0.376, allocations: 161.1 kB / 457.4 MB, free: 9.203 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0005494/0.3766, allocations: 0.5909 MB / 458 MB, free: 8.609 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.03256/0.4091, allocations: 27.36 MB / 485.3 MB, free: 13.32 MB / 362.7 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05369/0.4628, allocations: 26.1 MB / 0.4994 GB, free: 3.598 MB / 378.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.006568/0.4694, allocations: 3.6 MB / 0.503 GB, free: 24 kB / 378.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.005778/0.4752, allocations: 3.073 MB / 0.506 GB, free: 12.95 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.03454/0.5097, allocations: 15.48 MB / 0.5211 GB, free: 13.54 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.553e-05/0.5098, allocations: 52.5 kB / 0.5211 GB, free: 13.48 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=227): time 4.759e-06/0.5098, allocations: 0 / 0.5211 GB, free: 13.48 MB / 410.7 MB
Notification: Performance of matching and sorting (n=324): time 0.1014/0.6112, allocations: 29.15 MB / 0.5496 GB, free: 412 kB / 426.7 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 8.28e-05/0.6113, allocations: 73.41 kB / 0.5497 GB, free: 324 kB / 426.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.bhigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.ahigh[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.blow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[7] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[6] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[5] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[4] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[3] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[2] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.alow[1] has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter chemicalReaction.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.005216/0.6165, allocations: 2.317 MB / 0.5519 GB, free: 13.98 MB / 442.7 MB
Notification: Performance of collectPreVariables (initialization): time 0.001231/0.6177, allocations: 69.69 kB / 0.552 GB, free: 13.91 MB / 442.7 MB
Notification: Performance of collectInitialEqns (initialization): time 0.002476/0.6202, allocations: 2.282 MB / 0.5542 GB, free: 11.62 MB / 442.7 MB
Notification: Performance of collectInitialBindings (initialization): time 0.002353/0.6226, allocations: 1.115 MB / 0.5553 GB, free: 10.52 MB / 442.7 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.004429/0.627, allocations: 0.9804 MB / 0.5563 GB, free: 9.539 MB / 442.7 MB
Notification: Performance of setup shared object (initialization): time 0.0001817/0.6272, allocations: 305.1 kB / 0.5566 GB, free: 9.238 MB / 442.7 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.008406/0.6356, allocations: 4.222 MB / 0.5607 GB, free: 5.016 MB / 442.7 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.1396/0.7751, allocations: 5.374 MB / 0.5659 GB, free: 157.5 MB / 442.7 MB
Notification: It was not possible to check the given initialization system for consistency symbolically, because the relevant equations are part of an algebraic loop. This is not supported yet.
Notification: Performance of analyzeInitialSystem (initialization): time 0.4013/1.176, allocations: 74.6 MB / 0.6388 GB, free: 101.1 MB / 442.7 MB
Warning: It was not possible to solve the under-determined initial system (301 equations and 329 variables)
Error: No system for the symbolic initialization was generated
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.5353673140052706]