Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction3.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001503/0.001503, allocations: 95.06 kB / 19.44 MB, free: 464 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001811/0.001811, allocations: 165.2 kB / 22.75 MB, free: 1.793 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.515/1.515, allocations: 177.1 MB / 203.1 MB, free: 5.613 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1491/0.1491, allocations: 17.45 MB / 277 MB, free: 11.59 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction3")
translateModel(Chemical.Examples.SimpleReactionsWithJunction3,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction3") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.974e-06/1.974e-06, allocations: 0 / 352.8 MB, free: 10.23 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.854e-05/4.052e-05, allocations: 9.062 kB / 352.8 MB, free: 10.23 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction3): time 0.04749/0.04753, allocations: 29.8 MB / 382.6 MB, free: 12.56 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.01839/0.06592, allocations: 9.483 MB / 392.1 MB, free: 3.031 MB / 314.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.001811/0.06773, allocations: 55.56 kB / 392.1 MB, free: 2.977 MB / 314.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.00532/0.07305, allocations: 1.803 MB / 393.9 MB, free: 1.164 MB / 314.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.003984/0.07703, allocations: 1.253 MB / 395.2 MB, free: 15.9 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.008693/0.08573, allocations: 3.92 MB / 399.1 MB, free: 11.96 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r_ref.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r_ref.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r_ref.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r_ref.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r_ref.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r_ref.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r_ref.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r_ref.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r_ref.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r_ref.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r_ref.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.004779/0.0905, allocations: 2.649 MB / 401.8 MB, free: 9.305 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001011/0.09151, allocations: 436.1 kB / 402.2 MB, free: 8.836 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.003275/0.09479, allocations: 1.454 MB / 403.6 MB, free: 7.379 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.002482/0.09727, allocations: 1.134 MB / 404.8 MB, free: 6.242 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.0003782/0.09765, allocations: 216 kB / 405 MB, free: 6.031 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005101/0.1028, allocations: 1.953 MB / 406.9 MB, free: 4.074 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.0009675/0.1037, allocations: 0.7865 MB / 407.7 MB, free: 3.285 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.001418/0.1051, allocations: 0.8143 MB / 408.5 MB, free: 2.469 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.1545/0.2596, allocations: 4.915 MB / 413.5 MB, free: 43.42 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 7.343e-06/0.2596, allocations: 0.5156 kB / 413.5 MB, free: 43.42 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.793e-06/0.2596, allocations: 0 / 413.5 MB, free: 43.42 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0001216/0.2597, allocations: 0 / 413.5 MB, free: 43.42 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 662
 * Number of variables: 662
Notification: Performance of Generate backend data structure: time 0.008147/0.2679, allocations: 3.161 MB / 416.6 MB, free: 42.05 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.673e-05/0.2679, allocations: 9.219 kB / 416.6 MB, free: 42.05 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.003241/0.2712, allocations: 1.311 MB / 417.9 MB, free: 41.86 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.002465/0.2736, allocations: 1.471 MB / 419.4 MB, free: 41.44 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0003038/0.2739, allocations: 382.9 kB / 419.8 MB, free: 41.18 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0003185/0.2743, allocations: 205.9 kB / 420 MB, free: 41.18 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.008778/0.283, allocations: 8.014 MB / 428 MB, free: 38.81 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 4.588e-05/0.2831, allocations: 1.266 kB / 428 MB, free: 38.81 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001696/0.2833, allocations: 80.5 kB / 428.1 MB, free: 38.75 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002584/0.2835, allocations: 300.5 kB / 428.4 MB, free: 38.68 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.01075/0.2943, allocations: 14.05 MB / 442.4 MB, free: 28.68 MB / 330.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.01878/0.313, allocations: 15.34 MB / 457.7 MB, free: 13.92 MB / 330.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003046/0.3161, allocations: 2.393 MB / 460.1 MB, free: 11.54 MB / 330.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.00226/0.3183, allocations: 1.975 MB / 462.1 MB, free: 9.562 MB / 330.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.01483/0.3332, allocations: 11.17 MB / 473.3 MB, free: 14.44 MB / 346.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 5.703e-05/0.3332, allocations: 47.55 kB / 473.3 MB, free: 14.38 MB / 346.7 MB
Notification: Performance of pre-optimization done (n=151): time 3.677e-06/0.3332, allocations: 0 / 473.3 MB, free: 14.38 MB / 346.7 MB
Error: Internal error It is not possible to select continuous time states because Number of Equations 51 greater than number of States 50 to select from.
Error: Internal error Selection of DummyDerivatives failed due to negative system rank of -1!
           There are 30 unassigned equations and 29 potential states.
Error: Internal error - IndexReduction.selectDummyDerivatives2new failed!
Error: Internal error - IndexReduction.processComps4New failed!
Error: Internal error - IndexReduction.dynamicStateSelectionWork failed!
"
[Timeout remaining time 660]
[Calling sys.exit(0), Time elapsed: 2.7515651589492336]