Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001401/0.001401, allocations: 88.72 kB / 19.44 MB, free: 356 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001483/0.001483, allocations: 157.7 kB / 22.75 MB, free: 1.684 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.517/1.517, allocations: 177.1 MB / 203.1 MB, free: 5.598 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1575/0.1575, allocations: 17.46 MB / 277 MB, free: 11.58 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2")
translateModel(Chemical.Examples.SimpleReactionsWithJunction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction2") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.713e-06/1.713e-06, allocations: 0 / 352.8 MB, free: 10.22 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 3.067e-05/3.238e-05, allocations: 6.25 kB / 352.8 MB, free: 10.21 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction2): time 0.05277/0.0528, allocations: 35.52 MB / 388.3 MB, free: 6.793 MB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02272/0.07552, allocations: 11.12 MB / 399.4 MB, free: 11.62 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003567/0.07909, allocations: 95.31 kB / 399.5 MB, free: 11.53 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.006541/0.08563, allocations: 2.194 MB / 401.7 MB, free: 9.32 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.006362/0.09199, allocations: 2.009 MB / 403.7 MB, free: 7.297 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01155/0.1035, allocations: 4.36 MB / 408.1 MB, free: 2.918 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.1626/0.2661, allocations: 5.012 MB / 413.1 MB, free: 34.12 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.002171/0.2683, allocations: 1.329 MB / 414.4 MB, free: 33.79 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.00531/0.2736, allocations: 3.146 MB / 417.6 MB, free: 33.79 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.004492/0.2781, allocations: 2.404 MB / 420 MB, free: 33.75 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.001185/0.2793, allocations: 0.5296 MB / 420.5 MB, free: 33.75 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005682/0.285, allocations: 2.312 MB / 422.8 MB, free: 33.68 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.001659/0.2866, allocations: 1.707 MB / 424.5 MB, free: 33.44 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.003006/0.2896, allocations: 1.788 MB / 426.3 MB, free: 33.02 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01071/0.3003, allocations: 9 MB / 435.3 MB, free: 29.27 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 6.773e-06/0.3003, allocations: 0 / 435.3 MB, free: 29.27 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.493e-06/0.3003, allocations: 1.625 kB / 435.3 MB, free: 29.27 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.0002176/0.3006, allocations: 0 / 435.3 MB, free: 29.27 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1431
 * Number of variables: 1431
Notification: Performance of Generate backend data structure: time 0.01197/0.3125, allocations: 6.124 MB / 441.5 MB, free: 25.01 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.948e-05/0.3126, allocations: 8.031 kB / 441.5 MB, free: 25 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.005071/0.3176, allocations: 2.399 MB / 443.9 MB, free: 22.63 MB / 330.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.004136/0.3218, allocations: 2.69 MB / 446.6 MB, free: 20.06 MB / 330.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000427/0.3222, allocations: 0.7329 MB / 447.3 MB, free: 19.25 MB / 330.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0006402/0.3228, allocations: 457.7 kB / 447.7 MB, free: 18.81 MB / 330.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.01564/0.3385, allocations: 14.54 MB / 462.3 MB, free: 4.281 MB / 330.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 8.759e-05/0.3386, allocations: 3.188 kB / 462.3 MB, free: 4.281 MB / 330.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.000391/0.339, allocations: 179.3 kB / 462.4 MB, free: 4.113 MB / 330.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.000435/0.3394, allocations: 0.5532 MB / 463 MB, free: 3.562 MB / 330.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.03157/0.371, allocations: 23.23 MB / 486.2 MB, free: 12.39 MB / 362.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.06303/0.434, allocations: 29.67 MB / 0.5038 GB, free: 15.17 MB / 394.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.009817/0.4438, allocations: 4.57 MB / 0.5083 GB, free: 10.61 MB / 394.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.007763/0.4516, allocations: 3.94 MB / 0.5121 GB, free: 6.672 MB / 394.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.0429/0.4945, allocations: 19.95 MB / 0.5316 GB, free: 2.789 MB / 410.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 6.227e-05/0.4945, allocations: 52.56 kB / 0.5317 GB, free: 2.73 MB / 410.7 MB
Notification: Performance of pre-optimization done (n=289): time 4.459e-06/0.4945, allocations: 0 / 0.5317 GB, free: 2.73 MB / 410.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.0775616499595344]