Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Examples.SimpleReactionsWithJunction.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001431/0.001431, allocations: 92.7 kB / 19.44 MB, free: 320 kB / 13.93 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001701/0.001701, allocations: 161.3 kB / 22.75 MB, free: 1.648 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.481/1.481, allocations: 177.1 MB / 203.1 MB, free: 5.605 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1494/0.1494, allocations: 17.45 MB / 277 MB, free: 11.58 MB / 266.7 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction")
translateModel(Chemical.Examples.SimpleReactionsWithJunction,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Examples.SimpleReactionsWithJunction") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.683e-06/1.683e-06, allocations: 0 / 352.8 MB, free: 10.21 MB / 282.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.779e-05/2.948e-05, allocations: 2.312 kB / 352.8 MB, free: 10.21 MB / 282.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Warning: An inner declaration for outer component dropOfCommons could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Processes.mo:1084:7-1084:40:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"dropOfCommons\" component but
an inner \"dropOfCommons\" component is not defined.
Use Chemical.DropOfCommons in your model
to specify system properties.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1731:7-1731:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Examples.SimpleReactionsWithJunction): time 0.06155/0.06158, allocations: 41.84 MB / 394.6 MB, free: 460 kB / 314.7 MB
Notification: Performance of NFInst.instExpressions: time 0.02867/0.09025, allocations: 12.98 MB / 407.6 MB, free: 3.414 MB / 330.7 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.004712/0.09496, allocations: 150.8 kB / 407.8 MB, free: 3.266 MB / 330.7 MB
Notification: Performance of NFTyping.typeComponents: time 0.008266/0.1032, allocations: 2.578 MB / 410.3 MB, free: 0.6719 MB / 330.7 MB
Notification: Performance of NFTyping.typeBindings: time 0.1468/0.25, allocations: 2.835 MB / 413.2 MB, free: 32.57 MB / 330.7 MB
Notification: Performance of NFTyping.typeClassSections: time 0.01053/0.2605, allocations: 4.88 MB / 418.1 MB, free: 32.25 MB / 330.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r1.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r1.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r1.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r1.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r1.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r1.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r1.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r1.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r1.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r1.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r1.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1332:3-1332:55:writable] Warning: Parameter r_ref.nextProducts[1].data.MM has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1333:3-1333:87:writable] Warning: Parameter r_ref.nextProducts[1].data.Hf has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1334:3-1334:81:writable] Warning: Parameter r_ref.nextProducts[1].data.H0 has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1336:3-1336:82:writable] Warning: Parameter r_ref.nextProducts[1].data.alow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1337:3-1337:79:writable] Warning: Parameter r_ref.nextProducts[1].data.blow has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1338:3-1338:84:writable] Warning: Parameter r_ref.nextProducts[1].data.ahigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 7)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1339:3-1339:81:writable] Warning: Parameter r_ref.nextProducts[1].data.bhigh has no value, and is fixed during initialization (fixed=true), using available start value (start=fill(0.0, 3)) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1341:3-1342:83:writable] Warning: Parameter r_ref.nextProducts[1].data.z has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1344:3-1344:89:writable] Warning: Parameter r_ref.nextProducts[1].data.phase has no value, and is fixed during initialization (fixed=true), using available start value (start=Chemical.Interfaces.Phase.Gas) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1347:3-1347:140:writable] Warning: Parameter r_ref.nextProducts[1].data.VmBase has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Interfaces.mo:1348:3-1348:137:writable] Warning: Parameter r_ref.nextProducts[1].data.VmExcess has no value, and is fixed during initialization (fixed=true), using available start value (start=0.0) as default value.
Notification: Performance of NFFlatten.flatten: time 0.01145/0.272, allocations: 7.5 MB / 425.6 MB, free: 30.3 MB / 330.7 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.003289/0.2753, allocations: 1.676 MB / 427.2 MB, free: 29.95 MB / 330.7 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.009049/0.2843, allocations: 4.552 MB / 431.8 MB, free: 28.28 MB / 330.7 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.006425/0.2908, allocations: 3.525 MB / 435.3 MB, free: 27.19 MB / 330.7 MB
Notification: Performance of NFPackage.collectConstants: time 0.002167/0.2929, allocations: 0.7412 MB / 436.1 MB, free: 27.19 MB / 330.7 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.007841/0.3008, allocations: 2.563 MB / 438.6 MB, free: 26.57 MB / 330.7 MB
Notification: Performance of NFScalarize.scalarize: time 0.002751/0.3035, allocations: 2.464 MB / 441.1 MB, free: 24.39 MB / 330.7 MB
Notification: Performance of NFVerifyModel.verify: time 0.005528/0.309, allocations: 2.573 MB / 443.6 MB, free: 21.92 MB / 330.7 MB
Notification: Performance of NFConvertDAE.convert: time 0.01627/0.3253, allocations: 12.21 MB / 455.9 MB, free: 10.51 MB / 330.7 MB
Notification: Performance of FrontEnd - DAE generated: time 5.881e-06/0.3253, allocations: 0 / 455.9 MB, free: 10.51 MB / 330.7 MB
Notification: Performance of FrontEnd: time 1.954e-06/0.3253, allocations: 0 / 455.9 MB, free: 10.51 MB / 330.7 MB
Notification: Performance of Transformations before backend: time 0.000415/0.3257, allocations: 0 / 455.9 MB, free: 10.51 MB / 330.7 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 2093
 * Number of variables: 2093
Notification: Performance of Generate backend data structure: time 0.02114/0.3469, allocations: 8.825 MB / 464.7 MB, free: 1.754 MB / 330.7 MB
Notification: Performance of prepare preOptimizeDAE: time 3.718e-05/0.3469, allocations: 8.031 kB / 464.7 MB, free: 1.746 MB / 330.7 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.009969/0.3569, allocations: 3.688 MB / 468.4 MB, free: 14.11 MB / 346.7 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.008467/0.3654, allocations: 3.986 MB / 472.4 MB, free: 10.31 MB / 346.7 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.00132/0.3667, allocations: 1.112 MB / 473.5 MB, free: 9.082 MB / 346.7 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.001986/0.3687, allocations: 0.6448 MB / 474.1 MB, free: 8.449 MB / 346.7 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.04056/0.4092, allocations: 22.52 MB / 496.6 MB, free: 1.949 MB / 362.7 MB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0002157/0.4094, allocations: 3.188 kB / 496.6 MB, free: 1.949 MB / 362.7 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.001592/0.411, allocations: 267.6 kB / 496.9 MB, free: 1.703 MB / 362.7 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.001437/0.4125, allocations: 0.8366 MB / 497.7 MB, free: 0.8672 MB / 362.7 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.05563/0.4681, allocations: 37.28 MB / 0.5225 GB, free: 11.68 MB / 410.7 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.3129/0.781, allocations: 44.86 MB / 0.5663 GB, free: 147.6 MB / 442.7 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.01394/0.7949, allocations: 6.96 MB / 0.5731 GB, free: 146.9 MB / 442.7 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.01136/0.8063, allocations: 5.919 MB / 0.5789 GB, free: 144 MB / 442.7 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.05183/0.8581, allocations: 29.42 MB / 0.6076 GB, free: 127.9 MB / 442.7 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 7.652e-05/0.8582, allocations: 65.56 kB / 0.6077 GB, free: 127.8 MB / 442.7 MB
Notification: Performance of pre-optimization done (n=440): time 8.867e-06/0.8582, allocations: 1.844 kB / 0.6077 GB, free: 127.8 MB / 442.7 MB
Error: Internal error IndexReduction.pantelidesIndexReduction failed! System is structurally singular and cannot be handled because the number of unassigned equations is larger than the number of states. Use -d=bltdump to get more information.
Error: Internal error Transformation Module PFPlusExt index Reduction Method Pantelides failed!
"
[Timeout remaining time 659]
[Calling sys.exit(0), Time elapsed: 3.218718784977682]