Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001431/0.001431, allocations: 88.72 kB / 19.44 MB, free: 352 kB / 13.93 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001611/0.001611, allocations: 157.7 kB / 22.75 MB, free: 1.68 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.459/1.459, allocations: 177.1 MB / 203.1 MB, free: 5.488 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1401/0.1401, allocations: 17.37 MB / 276.9 MB, free: 11.67 MB / 266.7 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.424e-06/2.424e-06, allocations: 0 / 352.7 MB, free: 10.3 MB / 282.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 3.089e-05/3.331e-05, allocations: 2.312 kB / 352.7 MB, free: 10.29 MB / 282.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery): time 0.07489/0.07493, allocations: 40.46 MB / 393.2 MB, free: 1.926 MB / 314.7 MB Notification: Performance of NFInst.instExpressions: time 0.2349/0.3098, allocations: 64.37 MB / 457.6 MB, free: 14.23 MB / 330.7 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.004032/0.3138, allocations: 76.84 kB / 457.6 MB, free: 14.19 MB / 330.7 MB Notification: Performance of NFTyping.typeComponents: time 0.005032/0.3188, allocations: 1.498 MB / 459.1 MB, free: 13.02 MB / 330.7 MB Notification: Performance of NFTyping.typeBindings: time 0.01904/0.3379, allocations: 6.211 MB / 465.3 MB, free: 7.328 MB / 330.7 MB Notification: Performance of NFTyping.typeClassSections: time 0.03014/0.368, allocations: 10.69 MB / 476 MB, free: 12.68 MB / 346.7 MB Notification: Performance of NFFlatten.flatten: time 0.04175/0.4098, allocations: 27.42 MB / 0.4917 GB, free: 1.16 MB / 362.7 MB Notification: Performance of NFFlatten.resolveConnections: time 0.03084/0.4406, allocations: 17.18 MB / 0.5084 GB, free: 15.88 MB / 394.7 MB Notification: Performance of NFEvalConstants.evaluate: time 0.04521/0.4858, allocations: 23.18 MB / 0.5311 GB, free: 8.672 MB / 410.7 MB Notification: Performance of NFSimplifyModel.simplify: time 0.03702/0.5228, allocations: 16.43 MB / 0.5471 GB, free: 8.266 MB / 426.7 MB Notification: Performance of NFPackage.collectConstants: time 0.0122/0.535, allocations: 3.132 MB / 0.5502 GB, free: 5.137 MB / 426.7 MB Notification: Performance of NFFlatten.collectFunctions: time 0.04033/0.5754, allocations: 10.38 MB / 0.5603 GB, free: 10.73 MB / 442.7 MB Notification: Performance of NFScalarize.scalarize: time 0.01515/0.5905, allocations: 7.151 MB / 0.5673 GB, free: 3.566 MB / 442.7 MB Notification: Performance of NFVerifyModel.verify: time 0.3447/0.9352, allocations: 9.406 MB / 0.5765 GB, free: 48.62 MB / 442.8 MB Notification: Performance of NFConvertDAE.convert: time 0.07468/1.01, allocations: 47.54 MB / 0.6229 GB, free: 45.68 MB / 442.8 MB Notification: Performance of FrontEnd - DAE generated: time 7.635e-06/1.01, allocations: 0 / 0.6229 GB, free: 45.68 MB / 442.8 MB Notification: Performance of FrontEnd: time 1.583e-06/1.01, allocations: 0 / 0.6229 GB, free: 45.68 MB / 442.8 MB Notification: Performance of Transformations before backend: time 0.001041/1.011, allocations: 0.7812 kB / 0.6229 GB, free: 45.68 MB / 442.8 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3808 * Number of variables: 3808 Notification: Performance of Generate backend data structure: time 0.08096/1.092, allocations: 23.51 MB / 0.6459 GB, free: 32.02 MB / 442.8 MB Notification: Performance of prepare preOptimizeDAE: time 4.171e-05/1.092, allocations: 8.312 kB / 0.6459 GB, free: 32.02 MB / 442.8 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.03836/1.13, allocations: 6.574 MB / 0.6523 GB, free: 28.35 MB / 442.8 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.03072/1.161, allocations: 12.86 MB / 0.6649 GB, free: 15.95 MB / 442.8 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.002317/1.163, allocations: 3.075 MB / 0.6679 GB, free: 12.43 MB / 442.8 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.01195/1.175, allocations: 1.53 MB / 0.6693 GB, free: 10.9 MB / 442.8 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.1072/1.282, allocations: 35.25 MB / 0.7038 GB, free: 7.414 MB / 474.8 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0007165/1.283, allocations: 11.22 kB / 0.7038 GB, free: 7.41 MB / 474.8 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0108/1.294, allocations: 0.589 MB / 0.7044 GB, free: 6.824 MB / 474.8 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.000581/1.295, allocations: 367.9 kB / 0.7047 GB, free: 6.465 MB / 474.8 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.1195/1.414, allocations: 47.46 MB / 0.7511 GB, free: 7.004 MB / 0.5105 GB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.4595/1.873, allocations: 117.1 MB / 0.8654 GB, free: 113.4 MB / 0.5105 GB Notification: Performance of preOpt comSubExp (simulation): time 0.7981/2.672, allocations: 218.5 MB / 1.079 GB, free: 123.1 MB / 0.5105 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.03486/2.706, allocations: 18.49 MB / 1.097 GB, free: 105.4 MB / 0.5105 GB Notification: Performance of preOpt evalFunc (simulation): time 0.1599/2.866, allocations: 77.17 MB / 1.172 GB, free: 29.55 MB / 0.5105 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 9.216e-05/2.866, allocations: 134.4 kB / 1.172 GB, free: 29.41 MB / 0.5105 GB Notification: Performance of preOpt simplifyInStream (simulation): time 0.02849/2.895, allocations: 6.294 MB / 1.179 GB, free: 23.55 MB / 0.5105 GB Notification: Performance of pre-optimization done (n=995): time 5.9e-05/2.895, allocations: 4 kB / 1.179 GB, free: 23.55 MB / 0.5105 GB Notification: Performance of matching and sorting (n=1129): time 0.9236/3.819, allocations: 130.8 MB / 1.306 GB, free: 105.7 MB / 0.5105 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.00013/3.819, allocations: 164.2 kB / 1.306 GB, free: 105.5 MB / 0.5105 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.01818/3.837, allocations: 9.75 MB / 1.316 GB, free: 96.01 MB / 0.5105 GB Notification: Performance of collectPreVariables (initialization): time 0.005934/3.843, allocations: 217.6 kB / 1.316 GB, free: 95.79 MB / 0.5105 GB Notification: Performance of collectInitialEqns (initialization): time 0.005431/3.848, allocations: 7.049 MB / 1.323 GB, free: 89.62 MB / 0.5105 GB Notification: Performance of collectInitialBindings (initialization): time 0.007911/3.856, allocations: 4.056 MB / 1.327 GB, free: 85.84 MB / 0.5105 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.01449/3.871, allocations: 3.249 MB / 1.33 GB, free: 82.58 MB / 0.5105 GB Notification: Performance of setup shared object (initialization): time 4.66e-05/3.871, allocations: 305.1 kB / 1.33 GB, free: 82.28 MB / 0.5105 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.02124/3.892, allocations: 11.84 MB / 1.342 GB, free: 70.43 MB / 0.5105 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.02661/3.919, allocations: 16.57 MB / 1.358 GB, free: 51.79 MB / 0.5105 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.05166/3.97, allocations: 29.76 MB / 1.387 GB, free: 19.87 MB / 0.5105 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0002216/3.97, allocations: 47.83 kB / 1.387 GB, free: 19.83 MB / 0.5105 GB Notification: Performance of matching and sorting (n=1889) (initialization): time 0.7197/4.69, allocations: 82.05 MB / 1.467 GB, free: 136.7 MB / 0.5105 GB Notification: Performance of prepare postOptimizeDAE: time 0.0002282/4.69, allocations: 70.75 kB / 1.467 GB, free: 136.7 MB / 0.5105 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0003115/4.691, allocations: 150.8 kB / 1.468 GB, free: 136.7 MB / 0.5105 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.1619/4.853, allocations: 60.49 MB / 1.527 GB, free: 78.8 MB / 0.5105 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01775/4.87, allocations: 3.727 MB / 1.53 GB, free: 75.18 MB / 0.5105 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.3783/5.249, allocations: 92.41 MB / 1.621 GB, free: 139.7 MB / 0.5105 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01885/5.267, allocations: 0.823 MB / 1.621 GB, free: 139.7 MB / 0.5105 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.005555/5.273, allocations: 0.9376 MB / 1.622 GB, free: 139.7 MB / 0.5105 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 677 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (1841): * Single equations (assignments): 1838 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of prepare postOptimizeDAE: time 0.01858/5.292, allocations: 5.368 MB / 1.628 GB, free: 138.2 MB / 0.5105 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.009883/5.301, allocations: 1.404 MB / 1.629 GB, free: 138 MB / 0.5105 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.2773/5.579, allocations: 48.44 MB / 1.676 GB, free: 123.4 MB / 0.5105 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0001319/5.579, allocations: 121.6 kB / 1.676 GB, free: 123.4 MB / 0.5105 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0001747/5.579, allocations: 15.31 kB / 1.676 GB, free: 123.4 MB / 0.5105 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.000443/5.58, allocations: 63.52 kB / 1.676 GB, free: 123.4 MB / 0.5105 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.3164/5.896, allocations: 68.86 MB / 1.744 GB, free: 57.41 MB / 0.5105 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.0001163/5.896, allocations: 8.031 kB / 1.744 GB, free: 57.41 MB / 0.5105 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.01402/5.91, allocations: 2.422 MB / 1.746 GB, free: 54.98 MB / 0.5105 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.08666/5.997, allocations: 20.23 MB / 1.766 GB, free: 34.91 MB / 0.5105 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.004015/6.001, allocations: 475.5 kB / 1.766 GB, free: 34.45 MB / 0.5105 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.2829/6.284, allocations: 45.77 MB / 1.811 GB, free: 139.8 MB / 0.5105 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 5.43e-06/6.284, allocations: 8.438 kB / 1.811 GB, free: 139.8 MB / 0.5105 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.2986/6.582, allocations: 62.99 MB / 1.872 GB, free: 125.6 MB / 0.5105 GB Notification: Performance of postOpt removeConstants (simulation): time 0.01324/6.596, allocations: 3.386 MB / 1.876 GB, free: 124.7 MB / 0.5105 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.007048/6.603, allocations: 291.7 kB / 1.876 GB, free: 124.5 MB / 0.5105 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01419/6.617, allocations: 0.5161 MB / 1.877 GB, free: 124.4 MB / 0.5105 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.008053/6.625, allocations: 1.553 MB / 1.878 GB, free: 122.9 MB / 0.5105 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.004976/6.63, allocations: 471.6 kB / 1.878 GB, free: 122.5 MB / 0.5105 GB Notification: Performance of sorting global known variables: time 0.01524/6.645, allocations: 6.485 MB / 1.885 GB, free: 116 MB / 0.5105 GB Notification: Performance of sort global known variables: time 9e-08/6.645, allocations: 0 / 1.885 GB, free: 116 MB / 0.5105 GB Notification: Performance of remove unused functions: time 0.03649/6.682, allocations: 6.71 MB / 1.891 GB, free: 109.8 MB / 0.5105 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 15 * Number of states: 60 (solution.temperature,O2_free.logn,H2O.logn,relaxed.OxyHm[1].logn,relaxed.OxyHm[2].logn,relaxed.OxyHm[3].logn,relaxed.OxyHm[4].logn,relaxed.DeoxyHm[1].logn,relaxed.DeoxyHm[2].logn,relaxed.DeoxyHm[3].logn,relaxed.DeoxyHm[4].logn,relaxed.HmAH[1].logn,relaxed.HmAH[2].logn,relaxed.HmAH[3].logn,relaxed.HmAH[4].logn,relaxed.HmA[1].logn,relaxed.HmA[2].logn,relaxed.HmA[3].logn,relaxed.HmA[4].logn,relaxed.HmNH3[1].logn,relaxed.HmNH3[2].logn,relaxed.HmNH3[3].logn,relaxed.HmNH3[4].logn,relaxed.HmNH2[1].logn,relaxed.HmNH2[2].logn,relaxed.HmNH2[3].logn,relaxed.HmNH2[4].logn,relaxed.HmNHCOO[1].logn,relaxed.HmNHCOO[2].logn,relaxed.HmNHCOO[3].logn,relaxed.HmNHCOO[4].logn,tensed.OxyHm[1].logn,tensed.OxyHm[2].logn,tensed.OxyHm[3].logn,tensed.OxyHm[4].logn,tensed.DeoxyHm[1].logn,tensed.DeoxyHm[2].logn,tensed.DeoxyHm[3].logn,tensed.DeoxyHm[4].logn,tensed.HmAH[1].logn,tensed.HmAH[2].logn,tensed.HmAH[3].logn,tensed.HmAH[4].logn,tensed.HmA[1].logn,tensed.HmA[2].logn,tensed.HmA[3].logn,tensed.HmA[4].logn,tensed.HmNH3[1].logn,tensed.HmNH3[2].logn,tensed.HmNH3[3].logn,tensed.HmNH3[4].logn,tensed.HmNH2[1].logn,tensed.HmNH2[2].logn,tensed.HmNH2[3].logn,tensed.HmNH2[4].logn,tensed.HmNHCOO[1].logn,tensed.HmNHCOO[2].logn,tensed.HmNHCOO[3].logn,tensed.HmNHCOO[4].logn,CO2_free.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (1234): * Single equations (assignments): 1231 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 3 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems (#iteration vars, #inner vars, density): 2 systems {(1,3,100.0%), (33,10,82.4%)} * Non-linear torn systems (#iteration vars, #inner vars): 1 system {(1,3)} Notification: Performance of Backend phase and start with SimCode phase: time 0.01448/6.696, allocations: 3.765 MB / 1.895 GB, free: 107.2 MB / 0.5105 GB Notification: Performance of simCode: created initialization part: time 0.07181/6.768, allocations: 26.39 MB / 1.921 GB, free: 80.84 MB / 0.5105 GB Notification: Performance of simCode: created event and clocks part: time 1.192e-05/6.768, allocations: 0 / 1.921 GB, free: 80.84 MB / 0.5105 GB Notification: Performance of simCode: created simulation system equations: time 0.04159/6.809, allocations: 13.61 MB / 1.934 GB, free: 67.22 MB / 0.5105 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.02523/6.835, allocations: 2.947 MB / 1.937 GB, free: 64.59 MB / 0.5105 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.1021/6.937, allocations: 38.37 MB / 1.974 GB, free: 26.13 MB / 0.5105 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.01336/6.95, allocations: 9.622 MB / 1.984 GB, free: 16.45 MB / 0.5105 GB Notification: Performance of simCode: alias equations: time 0.0181/6.968, allocations: 5.167 MB / 1.989 GB, free: 11.4 MB / 0.5105 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.007808/6.976, allocations: 1.437 MB / 1.99 GB, free: 9.965 MB / 0.5105 GB Notification: Performance of SimCode: time 1.743e-06/6.976, allocations: 0 / 1.99 GB, free: 9.965 MB / 0.5105 GB Notification: Performance of Templates: time 0.8018/7.778, allocations: 326.8 MB / 2.309 GB, free: 53.76 MB / 0.5105 GB " [Timeout remaining time 652] make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.makefile [Timeout 660] (rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe 2>&1) [Timeout 480] [Calling sys.exit(0), Time elapsed: 24.107140209991485]