Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries/ --ompython_omhome=/usr Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false) loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false) Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo) Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo) Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo) Using package Chemical with version 1.4.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo) Running command: translateModel(Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") translateModel(Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC") Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo): time 0.09038/0.09038, allocations: 15.26 MB / 31.21 MB, free: 3.219 MB / 24.77 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.0008845/0.0008845, allocations: 178.1 kB / 36.29 MB, free: 2.254 MB / 24.77 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.359/1.359, allocations: 223.3 MB / 264.5 MB, free: 6.223 MB / 202.7 MB Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0008172/0.0008171, allocations: 95.7 kB / 319.9 MB, free: 3.16 MB / 250.7 MB Notification: Performance of FrontEnd - loaded program: time 0.0003743/0.0003744, allocations: 16.16 kB / 385.2 MB, free: 50.48 MB / 298.7 MB Notification: Performance of FrontEnd - Absyn->SCode: time 0.08462/0.08501, allocations: 54.64 MB / 439.8 MB, free: 72 kB / 298.7 MB Notification: Performance of FrontEnd - scodeFlatten: time 0.32/0.4051, allocations: 106 MB / 0.533 GB, free: 15.66 MB / 378.7 MB Notification: Performance of FrontEnd - mkProgramGraph: time 0.0001788/0.4053, allocations: 73.52 kB / 0.5331 GB, free: 15.66 MB / 378.7 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:4721:7-4721:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System solution.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Solution. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System oxygen_in_air.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Sources.ExternalIdealGasSubstance$oxygen_in_air. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2O.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2O. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyTHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System oxygen_unbound.system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$oxygen_unbound. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyRHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DeoxyRHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DeoxyRHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[4].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[3].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[2].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System OxyTHm[1].system declared as 'outer '. The existing 'inner' components are: There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$OxyTHm. Check if you have not misspelled the 'outer' component name. Please declare an 'inner' component with the same name in the top scope. Continuing flattening by only considering the 'outer' component declaration. Notification: Performance of FrontEnd - DAE generated: time 0.3675/0.7728, allocations: 144.5 MB / 0.6742 GB, free: 9.566 MB / 474.7 MB Notification: Performance of FrontEnd: time 2.614e-06/0.7729, allocations: 0 / 0.6742 GB, free: 9.566 MB / 474.7 MB Notification: Performance of Transformations before backend: time 0.000556/0.7734, allocations: 111.9 kB / 0.6743 GB, free: 9.457 MB / 474.7 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 1226 * Number of variables: 1226 Notification: Performance of Generate backend data structure: time 0.01989/0.7933, allocations: 6.275 MB / 0.6804 GB, free: 3.098 MB / 474.7 MB Notification: Performance of prepare preOptimizeDAE: time 3.852e-05/0.7934, allocations: 16.81 kB / 0.6804 GB, free: 3.082 MB / 474.7 MB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.006657/0.8, allocations: 1.487 MB / 0.6819 GB, free: 1.586 MB / 474.7 MB Notification: Performance of preOpt evaluateParameters (simulation): time 0.2156/1.016, allocations: 4.743 MB / 0.6865 GB, free: 58.88 MB / 474.7 MB Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0005688/1.016, allocations: 0.6727 MB / 0.6871 GB, free: 58.52 MB / 474.7 MB Notification: Performance of preOpt expandDerOperator (simulation): time 0.001717/1.018, allocations: 0.4901 MB / 0.6876 GB, free: 58.52 MB / 474.7 MB Notification: Performance of preOpt clockPartitioning (simulation): time 0.02464/1.043, allocations: 12.55 MB / 0.6999 GB, free: 58.16 MB / 474.7 MB Notification: Performance of preOpt findStateOrder (simulation): time 0.0002157/1.043, allocations: 5.094 kB / 0.6999 GB, free: 58.16 MB / 474.7 MB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.001905/1.045, allocations: 193.8 kB / 0.7001 GB, free: 58.16 MB / 474.7 MB Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0002178/1.045, allocations: 121.6 kB / 0.7002 GB, free: 58.15 MB / 474.7 MB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.02599/1.071, allocations: 19.14 MB / 0.7189 GB, free: 58.11 MB / 474.7 MB Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts. Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.06403/1.135, allocations: 41.79 MB / 0.7597 GB, free: 46.88 MB / 474.7 MB Notification: Performance of preOpt comSubExp (simulation): time 0.07156/1.207, allocations: 32.64 MB / 0.7916 GB, free: 37.81 MB / 474.7 MB Notification: Performance of preOpt resolveLoops (simulation): time 0.009548/1.216, allocations: 7.969 MB / 0.7993 GB, free: 30.95 MB / 474.7 MB Notification: Performance of preOpt evalFunc (simulation): time 0.0013/1.218, allocations: 0.6613 MB / 0.8 GB, free: 30.44 MB / 474.7 MB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 5.989e-05/1.218, allocations: 98.55 kB / 0.8001 GB, free: 30.34 MB / 474.7 MB Notification: Performance of preOpt simplifyInStream (simulation): time 0.006885/1.225, allocations: 1.431 MB / 0.8015 GB, free: 29.36 MB / 474.7 MB Notification: Performance of pre-optimization done (n=600): time 2.097e-05/1.225, allocations: 0 / 0.8015 GB, free: 29.36 MB / 474.7 MB Notification: Performance of matching and sorting (n=727): time 0.1433/1.368, allocations: 58.29 MB / 0.8584 GB, free: 14.5 MB / 0.4948 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.000116/1.368, allocations: 128.8 kB / 0.8585 GB, free: 14.36 MB / 0.4948 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.00775/1.376, allocations: 4.098 MB / 0.8625 GB, free: 10.29 MB / 0.4948 GB Notification: Performance of collectPreVariables (initialization): time 0.001717/1.378, allocations: 141.7 kB / 0.8627 GB, free: 10.14 MB / 0.4948 GB Notification: Performance of collectInitialEqns (initialization): time 0.001752/1.379, allocations: 1.93 MB / 0.8646 GB, free: 8.223 MB / 0.4948 GB Notification: Performance of collectInitialBindings (initialization): time 0.003748/1.383, allocations: 2.42 MB / 0.8669 GB, free: 5.824 MB / 0.4948 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.0006491/1.384, allocations: 128 kB / 0.867 GB, free: 5.699 MB / 0.4948 GB Notification: Performance of setup shared object (initialization): time 0.0004287/1.384, allocations: 0.5587 MB / 0.8676 GB, free: 5.133 MB / 0.4948 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.2936/1.678, allocations: 7.445 MB / 0.8749 GB, free: 84.77 MB / 0.4948 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.01426/1.692, allocations: 8.205 MB / 0.8829 GB, free: 84.21 MB / 0.4948 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.02572/1.718, allocations: 16.23 MB / 0.8987 GB, free: 83.56 MB / 0.4948 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.358e-05/1.718, allocations: 3.969 kB / 0.8987 GB, free: 83.56 MB / 0.4948 GB Notification: Performance of matching and sorting (n=816) (initialization): time 0.07231/1.79, allocations: 23.82 MB / 0.922 GB, free: 83.3 MB / 0.4948 GB Notification: Performance of prepare postOptimizeDAE: time 4.114e-05/1.79, allocations: 10.47 kB / 0.922 GB, free: 83.3 MB / 0.4948 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.243e-05/1.791, allocations: 10.72 kB / 0.922 GB, free: 83.3 MB / 0.4948 GB Notification: Performance of postOpt tearingSystem (initialization): time 0.01077/1.801, allocations: 4.704 MB / 0.9266 GB, free: 83.27 MB / 0.4948 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.007949/1.809, allocations: 1.667 MB / 0.9282 GB, free: 83.27 MB / 0.4948 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.03269/1.842, allocations: 20.05 MB / 0.9478 GB, free: 76.54 MB / 0.4948 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.007513/1.85, allocations: 445.6 kB / 0.9482 GB, free: 76.44 MB / 0.4948 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.001976/1.852, allocations: 322.1 kB / 0.9485 GB, free: 76.39 MB / 0.4948 GB Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 61 * Number of states: 0 () * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (760): * Single equations (assignments): 756 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 4 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 2 {(9,100.0%) 4,(1,100.0%) 3} * Non-linear torn systems: 2 {1 38,1 3} Notification: Performance of prepare postOptimizeDAE: time 0.005146/1.857, allocations: 1.736 MB / 0.9502 GB, free: 75.74 MB / 0.4948 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.001494/1.858, allocations: 0.4961 MB / 0.9507 GB, free: 75.74 MB / 0.4948 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.05314/1.911, allocations: 21.36 MB / 0.9716 GB, free: 68.9 MB / 0.4948 GB Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.000115/1.912, allocations: 86.81 kB / 0.9717 GB, free: 68.9 MB / 0.4948 GB Notification: Performance of postOpt constantLinearSystem (simulation): time 3.423e-05/1.912, allocations: 3.375 kB / 0.9717 GB, free: 68.9 MB / 0.4948 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0002682/1.912, allocations: 43.98 kB / 0.9717 GB, free: 68.9 MB / 0.4948 GB Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.08072/1.993, allocations: 46.69 MB / 1.017 GB, free: 39.92 MB / 0.4948 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 8.04e-05/1.993, allocations: 20 kB / 1.017 GB, free: 39.9 MB / 0.4948 GB Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.007591/2, allocations: 1.602 MB / 1.019 GB, free: 38.69 MB / 0.4948 GB Notification: Performance of postOpt tearingSystem (simulation): time 0.008773/2.009, allocations: 3.466 MB / 1.022 GB, free: 36.33 MB / 0.4948 GB Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.001606/2.011, allocations: 270.5 kB / 1.023 GB, free: 36.12 MB / 0.4948 GB Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.0231/2.034, allocations: 14.94 MB / 1.037 GB, free: 22.75 MB / 0.4948 GB Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 1.419e-05/2.034, allocations: 25.91 kB / 1.037 GB, free: 22.73 MB / 0.4948 GB Notification: Performance of postOpt symbolicJacobian (simulation): time 0.325/2.359, allocations: 30.95 MB / 1.067 GB, free: 77.73 MB / 0.4948 GB Notification: Performance of postOpt removeConstants (simulation): time 0.00622/2.365, allocations: 1.652 MB / 1.069 GB, free: 77.64 MB / 0.4948 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.002252/2.368, allocations: 187.4 kB / 1.069 GB, free: 77.64 MB / 0.4948 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.007204/2.375, allocations: 387.6 kB / 1.07 GB, free: 77.64 MB / 0.4948 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.003603/2.378, allocations: 0.6941 MB / 1.07 GB, free: 77.63 MB / 0.4948 GB Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.001748/2.38, allocations: 304.6 kB / 1.07 GB, free: 77.63 MB / 0.4948 GB Notification: Performance of sorting global known variables: time 0.006816/2.387, allocations: 2.926 MB / 1.073 GB, free: 77.48 MB / 0.4948 GB Notification: Performance of sort global known variables: time 6.01e-07/2.387, allocations: 3.594 kB / 1.073 GB, free: 77.48 MB / 0.4948 GB Notification: Performance of remove unused functions: time 0.01308/2.4, allocations: 2.635 MB / 1.076 GB, free: 77.48 MB / 0.4948 GB Notification: Model statistics after passing the back-end for simulation: * Number of independent subsystems: 77 * Number of states: 19 (solution.temperature,OxyRHm[1].logn,OxyRHm[2].logn,OxyRHm[3].logn,OxyRHm[4].logn,DeoxyRHm[1].logn,DeoxyRHm[2].logn,DeoxyRHm[3].logn,DeoxyRHm[4].logn,OxyTHm[1].logn,OxyTHm[2].logn,OxyTHm[3].logn,OxyTHm[4].logn,DeoxyTHm[1].logn,DeoxyTHm[2].logn,DeoxyTHm[3].logn,DeoxyTHm[4].logn,oxygen_unbound.logn,H2O.logn) * Number of discrete variables: 0 () * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for simulation (799): * Single equations (assignments): 795 * Array equations: 0 * Algorithm blocks: 0 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (linear and non-linear blocks): 0 * Torn equation systems: 4 * Mixed (continuous/discrete) equation systems: 0 Notification: Torn system details for strict tearing set: * Linear torn systems: 2 {(1,100.0%) 3,(9,100.0%) 4} * Non-linear torn systems: 2 {1 38,1 3} Notification: Performance of Backend phase and start with SimCode phase: time 0.004191/2.404, allocations: 1.572 MB / 1.077 GB, free: 77.39 MB / 0.4948 GB Notification: Performance of simCode: created initialization part: time 0.02748/2.432, allocations: 16.64 MB / 1.094 GB, free: 76.88 MB / 0.4948 GB Notification: Performance of simCode: created event and clocks part: time 2.718e-05/2.432, allocations: 6 kB / 1.094 GB, free: 76.88 MB / 0.4948 GB Notification: Performance of simCode: created simulation system equations: time 0.01616/2.448, allocations: 9.675 MB / 1.103 GB, free: 76.49 MB / 0.4948 GB Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.01991/2.468, allocations: 1.794 MB / 1.105 GB, free: 76.44 MB / 0.4948 GB Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.03287/2.501, allocations: 20.15 MB / 1.125 GB, free: 70.48 MB / 0.4948 GB Notification: Performance of simCode: some other stuff during SimCode phase: time 0.003747/2.505, allocations: 4.069 MB / 1.129 GB, free: 69.64 MB / 0.4948 GB Notification: Performance of simCode: alias equations: time 0.008409/2.513, allocations: 2.474 MB / 1.131 GB, free: 69.47 MB / 0.4948 GB Notification: Performance of simCode: all other stuff during SimCode phase: time 0.002998/2.516, allocations: 0.5984 MB / 1.132 GB, free: 69.46 MB / 0.4948 GB Notification: Performance of SimCode: time 1.092e-06/2.516, allocations: 0 / 1.132 GB, free: 69.46 MB / 0.4948 GB Notification: Performance of Templates: time 0.552/3.068, allocations: 154.8 MB / 1.283 GB, free: 63.86 MB / 0.4948 GB make -j1 -f Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.makefile (rm -f Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; mkfifo Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe ; head -c 1048576 < Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe >> ../files/Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.sim & ./Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Examples.Hemoglobin.Allosteric_Hemoglobin2_MWC.pipe 2>&1)