Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries/ --ompython_omhome=/usr Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package Chemical with version 1.4.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo)
Running command: translateModel(Chemical.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane")
translateModel(Chemical.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo): time 0.1408/0.1408, allocations: 15.26 MB / 31.21 MB, free: 3.223 MB / 24.77 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001364/0.001364, allocations: 178.3 kB / 36.3 MB, free: 2.258 MB / 24.77 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.662/1.662, allocations: 223.3 MB / 264.5 MB, free: 6.195 MB / 202.7 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.0007852/0.0007851, allocations: 87.81 kB / 319.9 MB, free: 3.133 MB / 250.7 MB
Notification: Performance of FrontEnd - loaded program: time 0.0004231/0.0004232, allocations: 15.62 kB / 385.2 MB, free: 50.44 MB / 298.7 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.09025/0.09069, allocations: 54.64 MB / 439.8 MB, free: 44 kB / 298.7 MB
Notification: Performance of FrontEnd - scodeFlatten: time 0.3282/0.4189, allocations: 103.6 MB / 0.5307 GB, free: 15.7 MB / 378.7 MB
Notification: Performance of FrontEnd - mkProgramGraph: time 0.0001821/0.4191, allocations: 76.28 kB / 0.5308 GB, free: 15.7 MB / 378.7 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:4721:7-4721:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System blood_erythrocytes.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Solution$blood_erythrocytes.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:4721:7-4721:66:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System blood_plasma.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Solution.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System HCO3.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$HCO3.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2O.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2O.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System HCO3_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$HCO3_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2O_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2O_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Cl_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Cl_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Cl.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Cl.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System albumin.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$albumin.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System permeableUncharged.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$permeableUncharged.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System permeableUncharged_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$permeableUncharged_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System chargedImpermeable_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$chargedImpermeable_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Lac_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Lac_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Lac.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Lac.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System CO2.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$CO2.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System CO2_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$CO2_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System O2.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$O2.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System O2_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$O2_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System K.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$K.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Na.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Na.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Na_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Na_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System K_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$K_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System H2PO4_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$H2PO4_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System ADP_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$ADP_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System ATP_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$ATP_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System HPO4_E.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$HPO4_E.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System globulins.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$globulins.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Ca.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Ca.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Mg.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$Mg.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System DPG.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$DPG.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System GSH.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Components.Substance$GSH.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 1.4.0-master/package.mo:3011:6-3011:65:writable] Warning: No corresponding 'inner' declaration found for component .Modelica.Fluid.System Hemoglobin.system declared as 'outer '.
  The existing 'inner' components are:
    There are no 'inner' components defined in the model in any of the parent scopes of 'outer' component's scope: Chemical.Sources.Buffer$Hemoglobin.
  Check if you have not misspelled the 'outer' component name.
  Please declare an 'inner' component with the same name in the top scope.
  Continuing flattening by only considering the 'outer' component declaration.
Notification: Performance of FrontEnd - DAE generated: time 1.059/1.478, allocations: 340.7 MB / 0.8635 GB, free: 15.33 MB / 0.4948 GB
Notification: Performance of FrontEnd: time 2.004e-06/1.478, allocations: 0 / 0.8635 GB, free: 15.33 MB / 0.4948 GB
Notification: Performance of Transformations before backend: time 0.0006847/1.479, allocations: 167.9 kB / 0.8637 GB, free: 15.17 MB / 0.4948 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1818
 * Number of variables: 1818
Notification: Performance of Generate backend data structure: time 0.02771/1.506, allocations: 9.643 MB / 0.8731 GB, free: 5.426 MB / 0.4948 GB
Notification: Performance of prepare preOptimizeDAE: time 4.17e-05/1.507, allocations: 12.83 kB / 0.8731 GB, free: 5.414 MB / 0.4948 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0103/1.517, allocations: 2.38 MB / 0.8754 GB, free: 3.02 MB / 0.4948 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.2787/1.796, allocations: 5.501 MB / 0.8808 GB, free: 21.52 MB / 0.4948 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.000613/1.796, allocations: 0.5562 MB / 0.8813 GB, free: 21.47 MB / 0.4948 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.002493/1.799, allocations: 0.7342 MB / 0.8821 GB, free: 21.47 MB / 0.4948 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.02589/1.825, allocations: 14.19 MB / 0.8959 GB, free: 20.93 MB / 0.4948 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0001917/1.825, allocations: 5.25 kB / 0.8959 GB, free: 20.93 MB / 0.4948 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.001076/1.826, allocations: 288.5 kB / 0.8962 GB, free: 20.93 MB / 0.4948 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.000152/1.826, allocations: 176.4 kB / 0.8964 GB, free: 20.93 MB / 0.4948 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.03015/1.856, allocations: 21.9 MB / 0.9177 GB, free: 20.87 MB / 0.4948 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.06849/1.925, allocations: 43.86 MB / 0.9606 GB, free: 8.508 MB / 0.4948 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.03258/1.957, allocations: 22.23 MB / 0.9823 GB, free: 14.2 MB / 0.5105 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.01198/1.969, allocations: 8.445 MB / 0.9905 GB, free: 10.41 MB / 0.5105 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.005415/1.975, allocations: 2.409 MB / 0.9929 GB, free: 9.746 MB / 0.5105 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001654/1.975, allocations: 127.2 kB / 0.993 GB, free: 9.641 MB / 0.5105 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.005327/1.98, allocations: 0.7087 MB / 0.9937 GB, free: 9.336 MB / 0.5105 GB
Notification: Performance of pre-optimization done (n=925): time 2.931e-05/1.98, allocations: 0 / 0.9937 GB, free: 9.336 MB / 0.5105 GB
Notification: Performance of matching and sorting (n=1305): time 0.818/2.798, allocations: 118.4 MB / 1.109 GB, free: 75.98 MB / 0.5573 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001864/2.799, allocations: 182.5 kB / 1.11 GB, free: 75.91 MB / 0.5573 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.01338/2.812, allocations: 4.897 MB / 1.114 GB, free: 75.57 MB / 0.5573 GB
Notification: Performance of collectPreVariables (initialization): time 0.003453/2.816, allocations: 235.6 kB / 1.115 GB, free: 75.54 MB / 0.5573 GB
Notification: Performance of collectInitialEqns (initialization): time 0.004783/2.82, allocations: 2.891 MB / 1.117 GB, free: 74.88 MB / 0.5573 GB
Notification: Performance of collectInitialBindings (initialization): time 0.008559/2.829, allocations: 4.331 MB / 1.122 GB, free: 72.36 MB / 0.5573 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.003401/2.833, allocations: 229.2 kB / 1.122 GB, free: 72.36 MB / 0.5573 GB
Notification: Performance of setup shared object (initialization): time 0.001192/2.834, allocations: 0.7291 MB / 1.123 GB, free: 72.03 MB / 0.5573 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.01991/2.854, allocations: 8.383 MB / 1.131 GB, free: 72.01 MB / 0.5573 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.02186/2.876, allocations: 9.828 MB / 1.14 GB, free: 70.89 MB / 0.5573 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.04418/2.92, allocations: 19.06 MB / 1.159 GB, free: 69.05 MB / 0.5573 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.000107/2.92, allocations: 10.88 kB / 1.159 GB, free: 69.05 MB / 0.5573 GB
Notification: Performance of matching and sorting (n=1471) (initialization): time 0.06758/2.988, allocations: 22.99 MB / 1.181 GB, free: 59.68 MB / 0.5573 GB
Notification: Performance of prepare postOptimizeDAE: time 8.388e-05/2.988, allocations: 20.53 kB / 1.181 GB, free: 59.68 MB / 0.5573 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.002e-05/2.988, allocations: 26.17 kB / 1.181 GB, free: 59.68 MB / 0.5573 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.02691/3.015, allocations: 5.347 MB / 1.187 GB, free: 58.39 MB / 0.5573 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0186/3.033, allocations: 2.479 MB / 1.189 GB, free: 58.32 MB / 0.5573 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.03556/3.069, allocations: 18.43 MB / 1.207 GB, free: 45.59 MB / 0.5573 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0132/3.082, allocations: 489.2 kB / 1.208 GB, free: 45.39 MB / 0.5573 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.003386/3.086, allocations: 499.8 kB / 1.208 GB, free: 45.3 MB / 0.5573 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 127
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (1295):
 * Single equations (assignments): 1288
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 7
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems: 3 {(2,100.0%) 36,(1,100.0%) 3,(1,100.0%) 3}
 * Non-linear torn systems: 4 {3 99,1 3,1 26,1 3}
Notification: Performance of prepare postOptimizeDAE: time 0.01102/3.097, allocations: 1.385 MB / 1.209 GB, free: 44.45 MB / 0.5573 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.004762/3.101, allocations: 0.8213 MB / 1.21 GB, free: 44.01 MB / 0.5573 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.06941/3.171, allocations: 24.4 MB / 1.234 GB, free: 33.84 MB / 0.5573 GB
Notification: Performance of postOpt inlineArrayEqn (simulation): time 0.0002268/3.171, allocations: 147.3 kB / 1.234 GB, free: 33.84 MB / 0.5573 GB
Notification: Performance of postOpt constantLinearSystem (simulation): time 0.0001155/3.171, allocations: 7.469 kB / 1.234 GB, free: 33.84 MB / 0.5573 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0005179/3.172, allocations: 71.62 kB / 1.234 GB, free: 33.84 MB / 0.5573 GB
Notification: Performance of postOpt removeSimpleEquations (simulation): time 0.6057/3.778, allocations: 115.5 MB / 1.347 GB, free: 89.61 MB / 0.573 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 0.000265/3.778, allocations: 52.33 kB / 1.347 GB, free: 89.61 MB / 0.573 GB
Notification: Performance of postOpt solveSimpleEquations (simulation): time 0.01286/3.791, allocations: 2.413 MB / 1.349 GB, free: 89.61 MB / 0.573 GB
Notification: Performance of postOpt tearingSystem (simulation): time 0.02498/3.816, allocations: 5.124 MB / 1.354 GB, free: 89.49 MB / 0.573 GB
Notification: Performance of postOpt inputDerivativesUsed (simulation): time 0.004108/3.82, allocations: 442.5 kB / 1.355 GB, free: 89.49 MB / 0.573 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (simulation): time 0.03249/3.852, allocations: 17.37 MB / 1.372 GB, free: 81.79 MB / 0.573 GB
Notification: Performance of postOpt calculateStateSetsJacobians (simulation): time 7.633e-05/3.853, allocations: 78.78 kB / 1.372 GB, free: 81.79 MB / 0.573 GB
Notification: Performance of postOpt symbolicJacobian (simulation): time 0.08964/3.942, allocations: 38.12 MB / 1.409 GB, free: 64.24 MB / 0.573 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.004415/3.947, allocations: 0.9539 MB / 1.41 GB, free: 63.62 MB / 0.573 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.005308/3.952, allocations: 340.7 kB / 1.41 GB, free: 63.43 MB / 0.573 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01431/3.966, allocations: 467.1 kB / 1.411 GB, free: 63.23 MB / 0.573 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.005218/3.972, allocations: 1.077 MB / 1.412 GB, free: 63.05 MB / 0.573 GB
Notification: Performance of postOpt collapseArrayExpressions (simulation): time 0.003279/3.975, allocations: 0.5072 MB / 1.412 GB, free: 62.96 MB / 0.573 GB
Notification: Performance of sorting global known variables: time 0.009546/3.985, allocations: 3.312 MB / 1.416 GB, free: 61.72 MB / 0.573 GB
Notification: Performance of sort global known variables: time 5.91e-07/3.985, allocations: 0 / 1.416 GB, free: 61.72 MB / 0.573 GB
Notification: Performance of remove unused functions: time 0.03407/4.019, allocations: 6.132 MB / 1.422 GB, free: 61.05 MB / 0.573 GB
Notification: Model statistics after passing the back-end for simulation:
 * Number of independent subsystems: 236
 * Number of states: 34 (blood_erythrocytes.temperature,blood_erythrocytes.mass,blood_plasma.temperature,HCO3.logn,H2O.logn,HCO3_E.logn,H2O_E.logn,Cl_E.logn,Cl.logn,albumin.logn,permeableUncharged.logn,permeableUncharged_E.logn,chargedImpermeable_E.logn,Lac_E.logn,Lac.logn,H_E.logn,H.logn,CO2.logn,CO2_E.logn,O2.logn,O2_E.logn,K.logn,Na.logn,Na_E.logn,K_E.logn,H2PO4_E.logn,ADP_E.logn,ATP_E.logn,HPO4_E.logn,globulins.logn,Ca.logn,Mg.logn,DPG.logn,GSH.logn)
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for simulation (1307):
 * Single equations (assignments): 1300
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (linear and non-linear blocks): 0
 * Torn equation systems: 7
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems: 3 {(2,100.0%) 36,(1,100.0%) 3,(1,100.0%) 3}
 * Non-linear torn systems: 4 {4 117,1 3,1 26,1 3}
Notification: Performance of Backend phase and start with SimCode phase: time 0.02112/4.04, allocations: 6.308 MB / 1.428 GB, free: 60.18 MB / 0.573 GB
Notification: Performance of simCode: created initialization part: time 0.03093/4.071, allocations: 20.56 MB / 1.448 GB, free: 47.59 MB / 0.573 GB
Notification: Performance of simCode: created event and clocks part: time 5.516e-05/4.071, allocations: 9.156 kB / 1.448 GB, free: 47.58 MB / 0.573 GB
Notification: Performance of simCode: created simulation system equations: time 0.01883/4.09, allocations: 11.24 MB / 1.459 GB, free: 37.4 MB / 0.573 GB
Notification: Performance of simCode: created of all other equations (e.g. parameter, nominal, assert, etc): time 0.05997/4.15, allocations: 2.756 MB / 1.461 GB, free: 35.38 MB / 0.573 GB
Notification: Performance of simCode: created linear, non-linear and system jacobian parts: time 0.04573/4.196, allocations: 25.99 MB / 1.487 GB, free: 10.87 MB / 0.573 GB
Notification: Performance of simCode: some other stuff during SimCode phase: time 0.007772/4.203, allocations: 4.129 MB / 1.491 GB, free: 7.75 MB / 0.573 GB
Notification: Performance of simCode: alias equations: time 0.01382/4.217, allocations: 1.676 MB / 1.493 GB, free: 6.492 MB / 0.573 GB
Notification: Performance of simCode: all other stuff during SimCode phase: time 0.006226/4.224, allocations: 0.9381 MB / 1.493 GB, free: 5.703 MB / 0.573 GB
Notification: Performance of SimCode: time 1.182e-06/4.224, allocations: 0 / 1.493 GB, free: 5.703 MB / 0.573 GB
Notification: Performance of Templates: time 0.9203/5.144, allocations: 253.8 MB / 1.741 GB, free: 12.47 MB / 0.6042 GB
make -j1 -f Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.makefile
(rm -f Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe ; mkfifo Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe ; head -c 1048576 < Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe >> ../files/Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.sim & ./Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Examples.AcidBase.Dev.RedCellMembrane.pipe 2>&1)