Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001828/0.001828, allocations: 87.56 kB / 20.18 MB, free: 4.367 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.002034/0.002034, allocations: 168.9 kB / 23.49 MB, free: 1.062 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.532/1.532, allocations: 177.1 MB / 203.8 MB, free: 5.629 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.24/3.24, allocations: 274.5 MB / 0.5222 GB, free: 14.2 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") translateModel(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_Lithium.PGx_experiment") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.38e-05/1.38e-05, allocations: 2.312 kB / 0.6479 GB, free: 39.05 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_Lithium.PGx_experiment): time 0.00875/0.008763, allocations: 11.14 MB / 0.6587 GB, free: 31.74 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.003396/0.01216, allocations: 2.251 MB / 0.6609 GB, free: 30.13 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005714/0.01273, allocations: 17.94 kB / 0.661 GB, free: 30.12 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003781/0.01311, allocations: 229.1 kB / 0.6612 GB, free: 29.99 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0009717/0.01408, allocations: 0.6814 MB / 0.6618 GB, free: 29.48 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0007527/0.01483, allocations: 0.6315 MB / 0.6625 GB, free: 29.02 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.002071/0.0169, allocations: 3.039 MB / 0.6654 GB, free: 27.37 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0004984/0.0174, allocations: 325.2 kB / 0.6657 GB, free: 27.15 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.001241/0.01864, allocations: 1.367 MB / 0.6671 GB, free: 26.45 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0007777/0.01942, allocations: 0.7395 MB / 0.6678 GB, free: 26.16 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002666/0.01969, allocations: 279.4 kB / 0.6681 GB, free: 26.16 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0003537/0.02004, allocations: 282.1 kB / 0.6683 GB, free: 26.16 MB / 0.5262 GB Notification: Performance of combineBinaries: time 0.00177/0.02181, allocations: 3.097 MB / 0.6714 GB, free: 24.21 MB / 0.5262 GB Notification: Performance of replaceArrayConstructors: time 0.0008199/0.02263, allocations: 1.646 MB / 0.673 GB, free: 23.19 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0003441/0.02298, allocations: 183.8 kB / 0.6731 GB, free: 23.19 MB / 0.5262 GB Notification: Performance of FrontEnd: time 0.0002024/0.02318, allocations: 42.38 kB / 0.6732 GB, free: 23.18 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 288 (276) * Number of variables: 288 (288) Notification: Performance of [SIM] Bindings: time 0.005197/0.02838, allocations: 7.682 MB / 0.6807 GB, free: 17.82 MB / 0.5262 GB Notification: Performance of [SIM] FunctionAlias: time 0.0008196/0.02919, allocations: 1.064 MB / 0.6817 GB, free: 17.14 MB / 0.5262 GB Notification: Performance of [SIM] Early Inline: time 0.003479/0.03267, allocations: 5.061 MB / 0.6867 GB, free: 13.49 MB / 0.5262 GB Notification: Performance of [SIM] Simplify 1: time 0.0008761/0.03355, allocations: 0.5887 MB / 0.6872 GB, free: 13.22 MB / 0.5262 GB Notification: Performance of [SIM] Alias: time 0.006978/0.04053, allocations: 5.752 MB / 0.6929 GB, free: 9.512 MB / 0.5262 GB Notification: Performance of [SIM] Simplify 2: time 0.0006456/0.04117, allocations: 0.4931 MB / 0.6933 GB, free: 9.273 MB / 0.5262 GB Notification: Performance of [SIM] Remove Stream: time 0.000415/0.04159, allocations: 0.5474 MB / 0.6939 GB, free: 8.809 MB / 0.5262 GB Notification: Performance of [SIM] Detect States: time 0.001784/0.04337, allocations: 2.088 MB / 0.6959 GB, free: 7.094 MB / 0.5262 GB Notification: Performance of [SIM] Events: time 0.0008182/0.04419, allocations: 0.8937 MB / 0.6968 GB, free: 6.594 MB / 0.5262 GB Notification: Performance of [SIM] Partitioning: time 0.001943/0.04613, allocations: 2.145 MB / 0.6989 GB, free: 4.625 MB / 0.5262 GB Notification: Performance of [SIM] Causalize: time 0.007672/0.05381, allocations: 6 MB / 0.7047 GB, free: 14.2 MB / 0.5418 GB Notification: Performance of [SIM] After Index Reduction Inline: time 0.004545/0.05835, allocations: 4.197 MB / 0.7088 GB, free: 9.996 MB / 0.5418 GB Notification: Performance of [INI] Simplify: time 0.004506/0.06286, allocations: 2.72 MB / 0.7115 GB, free: 7.184 MB / 0.5418 GB Notification: Performance of [INI] Inline: time 0.006861/0.06972, allocations: 6.248 MB / 0.7176 GB, free: 0.918 MB / 0.5418 GB Notification: Performance of [INI] Partitioning: time 0.0003356/0.07005, allocations: 132.3 kB / 0.7177 GB, free: 0.7617 MB / 0.5418 GB Notification: Performance of [INI] Cleanup: time 0.001584/0.07164, allocations: 1.456 MB / 0.7191 GB, free: 15.3 MB / 0.5574 GB Error: Internal error NBResolveSingularities.balanceInitialization failed because following non-fixable variables could not be solved: [DISC] (1) discrete Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmin (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_lower.periodicDose.absorptionLumen.Cmax (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_lower.central.Cmin (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_lower.central.Cmax (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium_upper.central.Cmin (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium_upper.central.Cmax (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium.central.Cmin (min = -1e-9) [DISC] (1) discrete Real low_clearance.pK_1C_Lithium.central.Cmax (min = -1e-9) [DISC] (1) discrete Real normal.pK_lower.periodicDose.absorptionLumen.Cmin (min = -1e-9) [DISC] (1) discrete Real normal.pK_lower.periodicDose.absorptionLumen.Cmax (min = -1e-9) [DISC] (1) discrete Real normal.pK_lower.central.Cmin (min = -1e-9) [DISC] (1) discrete Real normal.pK_lower.central.Cmax (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmin (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.Cmax (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium_upper.central.Cmin (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium_upper.central.Cmax (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmin (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium.periodicDose.absorptionLumen.Cmax (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium.central.Cmin (min = -1e-9) [DISC] (1) discrete Real normal.pK_1C_Lithium.central.Cmax (min = -1e-9) Following equations were created by fixing variables: [SCAL] (1) $PRE.normal.pK_1C_Lithium.central.rising = $START.normal.pK_1C_Lithium.central.rising; ($RES_SRT_623) [SCAL] (1) $PRE.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising = $START.normal.pK_1C_Lithium.periodicDose.absorptionLumen.rising; ($RES_SRT_622) [SCAL] (1) $PRE.normal.pK_1C_Lithium_upper.central.rising = $START.normal.pK_1C_Lithium_upper.central.rising; ($RES_SRT_621) [SCAL] (1) $PRE.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising = $START.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising; ($RES_SRT_620) [SCAL] (1) $PRE.normal.pK_lower.central.rising = $START.normal.pK_lower.central.rising; ($RES_SRT_619) [SCAL] (1) $PRE.normal.pK_lower.periodicDose.absorptionLumen.rising = $START.normal.pK_lower.periodicDose.absorptionLumen.rising; ($RES_SRT_618) [SCAL] (1) $PRE.low_clearance.pK_1C_Lithium.central.rising = $START.low_clearance.pK_1C_Lithium.central.rising; ($RES_SRT_617) [SCAL] (1) $PRE.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising = $START.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.rising; ($RES_SRT_616) [SCAL] (1) $PRE.low_clearance.pK_1C_Lithium_upper.central.rising = $START.low_clearance.pK_1C_Lithium_upper.central.rising; ($RES_SRT_615) [SCAL] (1) $PRE.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising = $START.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.rising; ($RES_SRT_614) [SCAL] (1) $PRE.low_clearance.pK_lower.central.rising = $START.low_clearance.pK_lower.central.rising; ($RES_SRT_613) [SCAL] (1) $PRE.low_clearance.pK_lower.periodicDose.absorptionLumen.rising = $START.low_clearance.pK_lower.periodicDose.absorptionLumen.rising; ($RES_SRT_612) [SCAL] (1) low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass = $START.low_clearance.pK_lower.periodicDose.variableDose.TotalCumulativeMass; ($RES_SRT_611) [SCAL] (1) low_clearance.pK_lower.periodicDose.absorptionLumen.AUC = $START.low_clearance.pK_lower.periodicDose.absorptionLumen.AUC; ($RES_SRT_610) [SCAL] (1) low_clearance.pK_lower.periodicDose.TotalCumulativeMass = $START.low_clearance.pK_lower.periodicDose.TotalCumulativeMass; ($RES_SRT_609) [SCAL] (1) low_clearance.pK_lower.central.AUC = $START.low_clearance.pK_lower.central.AUC; ($RES_SRT_608) [SCAL] (1) low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass = $START.low_clearance.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass; ($RES_SRT_607) [SCAL] (1) low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC = $START.low_clearance.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC; ($RES_SRT_606) [SCAL] (1) low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass = $START.low_clearance.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass; ($RES_SRT_605) [SCAL] (1) low_clearance.pK_1C_Lithium_upper.central.AUC = $START.low_clearance.pK_1C_Lithium_upper.central.AUC; ($RES_SRT_604) [SCAL] (1) low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass = $START.low_clearance.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass; ($RES_SRT_603) [SCAL] (1) low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC = $START.low_clearance.pK_1C_Lithium.periodicDose.absorptionLumen.AUC; ($RES_SRT_602) [SCAL] (1) low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass = $START.low_clearance.pK_1C_Lithium.periodicDose.TotalCumulativeMass; ($RES_SRT_601) [SCAL] (1) low_clearance.pK_1C_Lithium.central.AUC = $START.low_clearance.pK_1C_Lithium.central.AUC; ($RES_SRT_600) [SCAL] (1) normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass = $START.normal.pK_lower.periodicDose.variableDose.TotalCumulativeMass; ($RES_SRT_599) [SCAL] (1) normal.pK_lower.periodicDose.absorptionLumen.AUC = $START.normal.pK_lower.periodicDose.absorptionLumen.AUC; ($RES_SRT_598) [SCAL] (1) normal.pK_lower.periodicDose.TotalCumulativeMass = $START.normal.pK_lower.periodicDose.TotalCumulativeMass; ($RES_SRT_597) [SCAL] (1) normal.pK_lower.central.AUC = $START.normal.pK_lower.central.AUC; ($RES_SRT_596) [SCAL] (1) normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass = $START.normal.pK_1C_Lithium_upper.periodicDose.variableDose.TotalCumulativeMass; ($RES_SRT_595) [SCAL] (1) normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC = $START.normal.pK_1C_Lithium_upper.periodicDose.absorptionLumen.AUC; ($RES_SRT_594) [SCAL] (1) normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass = $START.normal.pK_1C_Lithium_upper.periodicDose.TotalCumulativeMass; ($RES_SRT_593) [SCAL] (1) normal.pK_1C_Lithium_upper.central.AUC = $START.normal.pK_1C_Lithium_upper.central.AUC; ($RES_SRT_592) [SCAL] (1) normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass = $START.normal.pK_1C_Lithium.periodicDose.variableDose.TotalCumulativeMass; ($RES_SRT_591) [SCAL] (1) normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC = $START.normal.pK_1C_Lithium.periodicDose.absorptionLumen.AUC; ($RES_SRT_590) [SCAL] (1) normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass = $START.normal.pK_1C_Lithium.periodicDose.TotalCumulativeMass; ($RES_SRT_589) [SCAL] (1) normal.pK_1C_Lithium.central.AUC = $START.normal.pK_1C_Lithium.central.AUC; ($RES_SRT_588) Use -d=bltdump for more verbose debug output. Error: Internal error NBInitialization.main failed to apply modules! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 5.821192938135937]