Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001759/0.001759, allocations: 88.84 kB / 20.18 MB, free: 4.367 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001857/0.001857, allocations: 168.9 kB / 23.49 MB, free: 1.062 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.585/1.585, allocations: 177.1 MB / 203.8 MB, free: 5.621 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.52/3.52, allocations: 274.5 MB / 0.5222 GB, free: 14.16 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PK_1C_GentamicinEquations,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations")
translateModel(Pharmacolibrary.Examples.PK_1C_GentamicinEquations,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations") [Timeout 660]
"Notification: Performance of FrontEnd - Absyn->SCode: time 1.575e-05/1.575e-05, allocations: 2.312 kB / 0.6479 GB, free: 39.24 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_1C_GentamicinEquations): time 0.001759/0.001775, allocations: 1.318 MB / 0.6492 GB, free: 38.37 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0002473/0.002022, allocations: 100.1 kB / 0.6493 GB, free: 38.31 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.065e-05/0.002053, allocations: 1.562 kB / 0.6493 GB, free: 38.31 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 1.56e-05/0.002069, allocations: 0 / 0.6493 GB, free: 38.31 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 5.012e-05/0.002119, allocations: 4.734 kB / 0.6493 GB, free: 38.31 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001277/0.002247, allocations: 16.95 kB / 0.6493 GB, free: 38.3 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 5.035e-05/0.002297, allocations: 23.02 kB / 0.6493 GB, free: 38.3 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.316e-05/0.00233, allocations: 0 / 0.6493 GB, free: 38.3 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 2.718e-05/0.002357, allocations: 9.156 kB / 0.6493 GB, free: 38.3 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001159/0.002473, allocations: 11.06 kB / 0.6493 GB, free: 38.29 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 1.269e-05/0.002486, allocations: 0.8438 kB / 0.6493 GB, free: 38.29 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 7.604e-06/0.002493, allocations: 1.156 kB / 0.6493 GB, free: 38.29 MB / 0.5262 GB
Notification: Performance of combineBinaries: time 4.687e-05/0.00254, allocations: 29.89 kB / 0.6494 GB, free: 38.28 MB / 0.5262 GB
Notification: Performance of replaceArrayConstructors: time 7.554e-06/0.002548, allocations: 9.688 kB / 0.6494 GB, free: 38.28 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 9.308e-06/0.002557, allocations: 2.125 kB / 0.6494 GB, free: 38.28 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 5.691e-06/0.002563, allocations: 0.9062 kB / 0.6494 GB, free: 38.28 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3 (3)
 * Number of variables: 3 (3)
Notification: Performance of [SIM] Bindings: time 0.0002682/0.002831, allocations: 223.3 kB / 0.6496 GB, free: 38 MB / 0.5262 GB
Notification: Performance of [SIM] FunctionAlias: time 3.452e-05/0.002866, allocations: 15.55 kB / 0.6496 GB, free: 37.99 MB / 0.5262 GB
Notification: Performance of [SIM] Early Inline: time 4.7e-05/0.002913, allocations: 73.17 kB / 0.6497 GB, free: 37.92 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 1: time 3.651e-05/0.002949, allocations: 46.77 kB / 0.6497 GB, free: 37.86 MB / 0.5262 GB
Notification: Performance of [SIM] Alias: time 4.538e-05/0.002994, allocations: 77.72 kB / 0.6498 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 2: time 1.899e-05/0.003013, allocations: 49.81 kB / 0.6498 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Stream: time 1.598e-05/0.003029, allocations: 35.72 kB / 0.6499 GB, free: 37.63 MB / 0.5262 GB
Notification: Performance of [SIM] Detect States: time 0.0001163/0.003146, allocations: 89.06 kB / 0.6499 GB, free: 37.51 MB / 0.5262 GB
Notification: Performance of [SIM] Events: time 1.644e-05/0.003162, allocations: 8.922 kB / 0.65 GB, free: 37.51 MB / 0.5262 GB
Notification: Performance of [SIM] Partitioning: time 8.083e-05/0.003243, allocations: 81.55 kB / 0.65 GB, free: 37.41 MB / 0.5262 GB
Notification: Performance of [SIM] Causalize: time 0.0001757/0.003419, allocations: 58.66 kB / 0.6501 GB, free: 37.36 MB / 0.5262 GB
Notification: Performance of [SIM] After Index Reduction Inline: time 2.063e-05/0.003439, allocations: 32.92 kB / 0.6501 GB, free: 37.35 MB / 0.5262 GB
Notification: Performance of [INI] Simplify: time 6.412e-05/0.003504, allocations: 74.94 kB / 0.6502 GB, free: 37.25 MB / 0.5262 GB
Notification: Performance of [INI] Inline: time 2.832e-05/0.003532, allocations: 52.98 kB / 0.6502 GB, free: 37.21 MB / 0.5262 GB
Notification: Performance of [INI] Partitioning: time 6.281e-06/0.003538, allocations: 14.11 kB / 0.6503 GB, free: 37.2 MB / 0.5262 GB
Notification: Performance of [INI] Cleanup: time 1.343e-05/0.003552, allocations: 9.344 kB / 0.6503 GB, free: 37.2 MB / 0.5262 GB
Notification: Performance of [INI] Causalize: time 0.0001537/0.003705, allocations: 107.5 kB / 0.6504 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of [INI] Tearing: time 1.258e-05/0.003718, allocations: 0 / 0.6504 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of [SIM] Initialization: time 5.01e-07/0.003718, allocations: 0 / 0.6504 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Dummies: time 3.697e-06/0.003722, allocations: 3.969 kB / 0.6504 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of [SIM] Tearing: time 8.71e-07/0.003723, allocations: 0 / 0.6504 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of [SIM] Categorize: time 5.24e-06/0.003728, allocations: 5.25 kB / 0.6504 GB, free: 37.15 MB / 0.5262 GB
Notification: Performance of [SIM] Solve: time 4.974e-05/0.003778, allocations: 23.72 kB / 0.6504 GB, free: 37.14 MB / 0.5262 GB
Notification: Performance of [SIM] Jacobian: time 5.797e-05/0.003836, allocations: 64.89 kB / 0.6505 GB, free: 37.06 MB / 0.5262 GB
Notification: Performance of [SIM] Minimize Homotopy System: time 4.71e-07/0.003836, allocations: 0 / 0.6505 GB, free: 37.06 MB / 0.5262 GB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 1
 * Number of algebraic partitions: ............... 1
 * Number of ODE event partitions: ............... 0
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 1 (1) {M}
 * Number of discrete states: .................... 0 (0) {}
 * Number of clocked states: ..................... 0 (0) {}
 * Number of discrete variables: ................. 0 (0) {}
 * Number of clocks: ............................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 3 (scalar:3, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 4 (scalar:4, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: Performance of backend: time 2.73e-05/0.003864, allocations: 15.95 kB / 0.6505 GB, free: 37.06 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.0002267/0.00409, allocations: 175.8 kB / 0.6506 GB, free: 36.92 MB / 0.5262 GB
Notification: Performance of Templates: time 0.002407/0.006498, allocations: 352.8 kB / 0.651 GB, free: 36.87 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_GentamicinEquations.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 8.132374638924375]