Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00173/0.00173, allocations: 91.56 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001795/0.001795, allocations: 168.9 kB / 23.49 MB, free: 1.066 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.498/1.498, allocations: 177.1 MB / 203.8 MB, free: 5.641 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.206/3.206, allocations: 274.5 MB / 0.5222 GB, free: 14.17 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue,tolerance=1e-06,outputFormat="empty",numberOfIntervals=7200,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue")
translateModel(Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue,tolerance=1e-06,outputFormat="empty",numberOfIntervals=7200,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue") [Timeout 660]
"Notification: Performance of FrontEnd - Absyn->SCode: time 1.933e-05/1.933e-05, allocations: 5.688 kB / 0.6479 GB, free: 38.98 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue): time 0.005015/0.005035, allocations: 2.969 MB / 0.6508 GB, free: 37.05 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.00176/0.006795, allocations: 0.7473 MB / 0.6515 GB, free: 36.56 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002617/0.007056, allocations: 11.28 kB / 0.6515 GB, free: 36.55 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002088/0.007265, allocations: 43.64 kB / 0.6516 GB, free: 36.53 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0004437/0.007709, allocations: 117.1 kB / 0.6517 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0003962/0.008105, allocations: 99.64 kB / 0.6518 GB, free: 36.43 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0006228/0.008728, allocations: 484.8 kB / 0.6522 GB, free: 36.18 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0004707/0.009198, allocations: 223.7 kB / 0.6524 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0004498/0.009648, allocations: 263.9 kB / 0.6527 GB, free: 35.94 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.000346/0.009994, allocations: 151.1 kB / 0.6528 GB, free: 35.9 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 8.108e-05/0.01008, allocations: 38.59 kB / 0.6529 GB, free: 35.9 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001074/0.01018, allocations: 39.09 kB / 0.6529 GB, free: 35.9 MB / 0.5262 GB
Notification: Performance of combineBinaries: time 0.0005292/0.01071, allocations: 0.5789 MB / 0.6535 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of replaceArrayConstructors: time 0.0001859/0.0109, allocations: 286.3 kB / 0.6538 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 7.892e-05/0.01098, allocations: 34.62 kB / 0.6538 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 4.227e-05/0.01102, allocations: 8.781 kB / 0.6538 GB, free: 35.41 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 68 (68)
 * Number of variables: 68 (68)
Notification: Performance of [SIM] Bindings: time 0.001635/0.01265, allocations: 1.51 MB / 0.6553 GB, free: 34.34 MB / 0.5262 GB
Notification: Performance of [SIM] FunctionAlias: time 0.0002757/0.01293, allocations: 263.8 kB / 0.6555 GB, free: 34.21 MB / 0.5262 GB
Notification: Performance of [SIM] Early Inline: time 0.00103/0.01396, allocations: 1.004 MB / 0.6565 GB, free: 33.57 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 1: time 0.0003731/0.01433, allocations: 182 kB / 0.6567 GB, free: 33.48 MB / 0.5262 GB
Notification: Performance of [SIM] Alias: time 0.002357/0.01669, allocations: 1.362 MB / 0.658 GB, free: 32.66 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 2: time 0.0002827/0.01697, allocations: 158.1 kB / 0.6582 GB, free: 32.58 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Stream: time 0.000175/0.01715, allocations: 134.1 kB / 0.6583 GB, free: 32.47 MB / 0.5262 GB
Notification: Performance of [SIM] Detect States: time 0.000487/0.01763, allocations: 352 kB / 0.6586 GB, free: 32.22 MB / 0.5262 GB
Notification: Performance of [SIM] Events: time 0.0002559/0.01789, allocations: 152.2 kB / 0.6588 GB, free: 32.15 MB / 0.5262 GB
Notification: Performance of [SIM] Partitioning: time 0.0005105/0.0184, allocations: 371.6 kB / 0.6591 GB, free: 31.94 MB / 0.5262 GB
Notification: Performance of [SIM] Causalize: time 0.0006822/0.01908, allocations: 381.2 kB / 0.6595 GB, free: 31.83 MB / 0.5262 GB
Notification: Performance of [SIM] After Index Reduction Inline: time 0.0005489/0.01963, allocations: 0.5917 MB / 0.6601 GB, free: 31.5 MB / 0.5262 GB
Notification: Performance of [INI] Simplify: time 0.001096/0.02073, allocations: 0.4985 MB / 0.6605 GB, free: 31.21 MB / 0.5262 GB
Notification: Performance of [INI] Inline: time 0.001096/0.02182, allocations: 0.9233 MB / 0.6614 GB, free: 30.69 MB / 0.5262 GB
Notification: Performance of [INI] Partitioning: time 7.337e-05/0.0219, allocations: 35.3 kB / 0.6615 GB, free: 30.66 MB / 0.5262 GB
Notification: Performance of [INI] Cleanup: time 0.0002863/0.02218, allocations: 216.1 kB / 0.6617 GB, free: 30.53 MB / 0.5262 GB
Notification: Performance of [INI] Causalize: time 0.00256/0.02474, allocations: 1.181 MB / 0.6628 GB, free: 30.14 MB / 0.5262 GB
Notification: Performance of [INI] Tearing: time 3.157e-05/0.02477, allocations: 32.38 kB / 0.6629 GB, free: 30.12 MB / 0.5262 GB
Notification: Performance of [SIM] Initialization: time 1.533e-06/0.02478, allocations: 0 / 0.6629 GB, free: 30.12 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Dummies: time 1.373e-05/0.02479, allocations: 0 / 0.6629 GB, free: 30.12 MB / 0.5262 GB
Notification: Performance of [SIM] Tearing: time 1.003e-05/0.0248, allocations: 21.78 kB / 0.6629 GB, free: 30.1 MB / 0.5262 GB
Notification: Performance of [SIM] Categorize: time 1.293e-05/0.02481, allocations: 1.312 kB / 0.6629 GB, free: 30.1 MB / 0.5262 GB
Notification: Performance of [SIM] Solve: time 0.0007361/0.02555, allocations: 495.8 kB / 0.6634 GB, free: 29.93 MB / 0.5262 GB
Notification: Performance of [SIM] Jacobian: time 0.0003877/0.02594, allocations: 316.2 kB / 0.6637 GB, free: 29.75 MB / 0.5262 GB
Notification: Performance of [SIM] Minimize Homotopy System: time 7.01e-07/0.02594, allocations: 4 kB / 0.6637 GB, free: 29.75 MB / 0.5262 GB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 9 (9) {tissue.M, tissue.AUC, arteries.M, arteries.AUC, veins.M, veins.AUC, singleDose.variableDose.TotalCumulativeMass, singleDose.TotalCumulativeMass, kidneyElim.MExc}
 * Number of discrete states: .................... 2 (2) {singleDose.pulse.T_start, singleDose.pulse.count}
 * Number of clocked states: ..................... 0 (0) {}
 * Number of discrete variables: ................. 5 (5) {$SEV_4, $SEV_3, $SEV_2, $SEV_1, $SEV_0}
 * Number of clocks: ............................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 33 (scalar:33, array:0, record:0)
 * Number of multi strong components: ............ 2 (algorithm:0, when:2, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 63 (scalar:63, array:0, record:0)
 * Number of multi strong components: ............ 1 (algorithm:1, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: Performance of backend: time 5.057e-05/0.02599, allocations: 34.88 kB / 0.6637 GB, free: 29.73 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.0009773/0.02696, allocations: 0.7297 MB / 0.6644 GB, free: 29.31 MB / 0.5262 GB
Notification: Performance of Templates: time 0.00632/0.03328, allocations: 2.786 MB / 0.6671 GB, free: 29.1 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PBPK_SingleDoseVenousArteryTissue.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 7.909834248013794]