Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001838/0.001838, allocations: 91.55 kB / 20.19 MB, free: 4.363 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001968/0.001968, allocations: 172.9 kB / 23.49 MB, free: 1.055 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.487/1.487, allocations: 177.1 MB / 203.8 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.241/3.241, allocations: 274.5 MB / 0.5222 GB, free: 14.21 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody,tolerance=1e-06,outputFormat="empty",numberOfIntervals=3600,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody")
translateModel(Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody,tolerance=1e-06,outputFormat="empty",numberOfIntervals=3600,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody") [Timeout 660]
"Notification: Performance of FrontEnd - Absyn->SCode: time 1.695e-05/1.695e-05, allocations: 2.312 kB / 0.6479 GB, free: 38.99 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody): time 0.006501/0.006517, allocations: 8.443 MB / 0.6561 GB, free: 33.46 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.003077/0.009594, allocations: 1.72 MB / 0.6578 GB, free: 32.27 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0006314/0.01023, allocations: 15.38 kB / 0.6578 GB, free: 32.27 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0003792/0.01061, allocations: 196.2 kB / 0.658 GB, free: 32.17 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0009418/0.01155, allocations: 488.5 kB / 0.6585 GB, free: 31.82 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.000726/0.01227, allocations: 377 kB / 0.6588 GB, free: 31.61 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.001636/0.01391, allocations: 1.976 MB / 0.6608 GB, free: 30.59 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.00218/0.01609, allocations: 2.421 MB / 0.6631 GB, free: 29.18 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.002225/0.01831, allocations: 1.828 MB / 0.6649 GB, free: 28.44 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.001813/0.02013, allocations: 1.361 MB / 0.6663 GB, free: 28.06 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0004793/0.02061, allocations: 305.9 kB / 0.6665 GB, free: 28.06 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0005383/0.02115, allocations: 308.3 kB / 0.6668 GB, free: 28.06 MB / 0.5262 GB
Notification: Performance of combineBinaries: time 0.002582/0.02373, allocations: 3.359 MB / 0.6701 GB, free: 26.29 MB / 0.5262 GB
Notification: Performance of replaceArrayConstructors: time 0.0007279/0.02445, allocations: 1.152 MB / 0.6712 GB, free: 25.61 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0006108/0.02507, allocations: 160.7 kB / 0.6714 GB, free: 25.61 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 0.000183/0.02525, allocations: 26.28 kB / 0.6714 GB, free: 25.61 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 307 (307)
 * Number of variables: 307 (307)
Notification: Performance of [SIM] Bindings: time 0.006316/0.03157, allocations: 7.956 MB / 0.6792 GB, free: 20.66 MB / 0.5262 GB
Notification: Performance of [SIM] FunctionAlias: time 0.003186/0.03475, allocations: 2.964 MB / 0.6821 GB, free: 19.15 MB / 0.5262 GB
Notification: Performance of [SIM] Early Inline: time 0.006207/0.04096, allocations: 8.438 MB / 0.6903 GB, free: 12.83 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 1: time 0.002444/0.0434, allocations: 1.792 MB / 0.6921 GB, free: 11.9 MB / 0.5262 GB
Notification: Performance of [SIM] Alias: time 0.007495/0.0509, allocations: 7.901 MB / 0.6998 GB, free: 4.164 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 2: time 0.001747/0.05264, allocations: 1.776 MB / 0.7015 GB, free: 2.574 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Stream: time 0.00184/0.05448, allocations: 2.303 MB / 0.7038 GB, free: 304 kB / 0.5262 GB
Notification: Performance of [SIM] Detect States: time 0.002937/0.05742, allocations: 2.369 MB / 0.7061 GB, free: 13.85 MB / 0.5418 GB
Notification: Performance of [SIM] Events: time 0.001665/0.05909, allocations: 1.357 MB / 0.7074 GB, free: 12.5 MB / 0.5418 GB
Notification: Performance of [SIM] Partitioning: time 0.003861/0.06295, allocations: 3.055 MB / 0.7104 GB, free: 9.371 MB / 0.5418 GB
Notification: Performance of [SIM] Causalize: time 0.004393/0.06734, allocations: 2.467 MB / 0.7128 GB, free: 6.848 MB / 0.5418 GB
Notification: Performance of [SIM] After Index Reduction Inline: time 0.006496/0.07384, allocations: 5.834 MB / 0.7185 GB, free: 1.008 MB / 0.5418 GB
Notification: Performance of [INI] Simplify: time 0.005068/0.0789, allocations: 3.042 MB / 0.7215 GB, free: 13.95 MB / 0.5574 GB
Notification: Performance of [INI] Inline: time 0.01033/0.08923, allocations: 8.977 MB / 0.7302 GB, free: 4.961 MB / 0.5574 GB
Notification: Performance of [INI] Partitioning: time 0.0002702/0.0895, allocations: 72.06 kB / 0.7303 GB, free: 4.871 MB / 0.5574 GB
Notification: Performance of [INI] Cleanup: time 0.002847/0.09235, allocations: 2.021 MB / 0.7323 GB, free: 2.848 MB / 0.5574 GB
Notification: Performance of [INI] Causalize: time 0.01102/0.1034, allocations: 6.447 MB / 0.7386 GB, free: 12.13 MB / 0.573 GB
Notification: Performance of [INI] Tearing: time 0.0001074/0.1035, allocations: 128 kB / 0.7387 GB, free: 12 MB / 0.573 GB
Notification: Performance of [SIM] Initialization: time 1.022e-06/0.1035, allocations: 0 / 0.7387 GB, free: 12 MB / 0.573 GB
Notification: Performance of [SIM] Remove Dummies: time 2.366e-05/0.1035, allocations: 5.312 kB / 0.7387 GB, free: 12 MB / 0.573 GB
Notification: Performance of [SIM] Tearing: time 6.669e-05/0.1036, allocations: 79.94 kB / 0.7388 GB, free: 11.92 MB / 0.573 GB
Notification: Performance of [SIM] Categorize: time 1.462e-05/0.1036, allocations: 12 kB / 0.7388 GB, free: 11.91 MB / 0.573 GB
Notification: Performance of [SIM] Solve: time 0.01018/0.1138, allocations: 7.064 MB / 0.7457 GB, free: 4.891 MB / 0.573 GB
Notification: Performance of [SIM] Jacobian: time 0.003774/0.1175, allocations: 1.925 MB / 0.7476 GB, free: 2.902 MB / 0.573 GB
Notification: Performance of [SIM] Minimize Homotopy System: time 9.41e-07/0.1175, allocations: 0 / 0.7476 GB, free: 2.902 MB / 0.573 GB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 34 (34) {singleDose.variableDose.TotalCumulativeMass, singleDose.TotalCumulativeMass, venous.M, venous.AUC, lungs.M, lungs.AUC, arterial.M, arterial.AUC, adipose.M, adipose.AUC, bone.M, bone.AUC, brain.M, brain.AUC, heart.M, heart.AUC, muscle.M, muscle.AUC, skin.M, skin.AUC, gut.M, gut.AUC, spleen.M, spleen.AUC, liver.M, liver.AUC, kidney.M, kidney.AUC, kidneyElim.MExc, liverElim.MExc, gonads.M, gonads.AUC, rest.M, rest.AUC}
 * Number of discrete states: .................... 2 (2) {singleDose.pulse.T_start, singleDose.pulse.count}
 * Number of clocked states: ..................... 0 (0) {}
 * Number of discrete variables: ................. 31 (31) {$SEV_30, $SEV_29, $SEV_28, $SEV_27, $SEV_26, $SEV_25, $SEV_24, $SEV_23, $SEV_22, $SEV_21, $SEV_20, $SEV_19, $SEV_18, $SEV_17, $SEV_16, $SEV_15, $SEV_14, $SEV_13, $SEV_12, $SEV_11, $SEV_10, $SEV_9, $SEV_8, $SEV_7, $SEV_6, $SEV_5, $SEV_4, $SEV_3, $SEV_2, $SEV_1, $SEV_0}
 * Number of clocks: ............................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 148 (scalar:148, array:0, record:0)
 * Number of multi strong components: ............ 2 (algorithm:0, when:2, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 254 (scalar:254, array:0, record:0)
 * Number of multi strong components: ............ 1 (algorithm:1, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: Performance of backend: time 0.0001176/0.1177, allocations: 99.69 kB / 0.7477 GB, free: 2.816 MB / 0.573 GB
Notification: Performance of SimCode: time 0.004695/0.1224, allocations: 3.126 MB / 0.7507 GB, free: 15.58 MB / 0.5887 GB
Notification: Performance of Templates: time 0.03555/0.1579, allocations: 21.74 MB / 0.772 GB, free: 9.992 MB / 0.6043 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PBPK_OralDoseGUTWholeBody.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 8.651484467089176]