Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002345/0.002345, allocations: 91.55 kB / 20.18 MB, free: 4.367 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001962/0.001962, allocations: 168.9 kB / 23.49 MB, free: 1.062 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.461/1.461, allocations: 177.1 MB / 203.8 MB, free: 5.617 MB / 186.7 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.279/3.279, allocations: 274.5 MB / 0.5222 GB, free: 14.23 MB / 458.7 MB " [Timeout remaining time 176] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations") translateModel(Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.977e-05/1.977e-05, allocations: 6.031 kB / 0.6479 GB, free: 39.1 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations): time 0.001881/0.0019, allocations: 1.297 MB / 0.6491 GB, free: 38.24 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.0002094/0.00211, allocations: 59.33 kB / 0.6492 GB, free: 38.21 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 3.782e-05/0.002148, allocations: 0 / 0.6492 GB, free: 38.21 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 6.551e-05/0.002213, allocations: 0 / 0.6492 GB, free: 38.21 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 3.723e-05/0.00225, allocations: 10.27 kB / 0.6492 GB, free: 38.2 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0001487/0.002399, allocations: 8.609 kB / 0.6492 GB, free: 38.2 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 8.743e-05/0.002486, allocations: 34.53 kB / 0.6493 GB, free: 38.2 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 4.384e-05/0.00253, allocations: 3.312 kB / 0.6493 GB, free: 38.2 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 8.047e-05/0.002611, allocations: 20.73 kB / 0.6493 GB, free: 38.19 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 8.215e-05/0.002693, allocations: 13.95 kB / 0.6493 GB, free: 38.19 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 1.983e-05/0.002713, allocations: 3.375 kB / 0.6493 GB, free: 38.19 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 9.838e-06/0.002723, allocations: 2.812 kB / 0.6493 GB, free: 38.19 MB / 0.5262 GB Notification: Performance of combineBinaries: time 6.373e-05/0.002786, allocations: 53.06 kB / 0.6493 GB, free: 38.16 MB / 0.5262 GB Notification: Performance of replaceArrayConstructors: time 1.41e-05/0.0028, allocations: 24.56 kB / 0.6494 GB, free: 38.15 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 9.418e-06/0.00281, allocations: 2.781 kB / 0.6494 GB, free: 38.15 MB / 0.5262 GB Notification: Performance of FrontEnd: time 8.567e-06/0.002818, allocations: 1.125 kB / 0.6494 GB, free: 38.15 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 3 (3) * Number of variables: 3 (3) Notification: Performance of [SIM] Bindings: time 0.0004589/0.003277, allocations: 296 kB / 0.6497 GB, free: 37.84 MB / 0.5262 GB Notification: Performance of [SIM] FunctionAlias: time 0.0001137/0.003391, allocations: 59.77 kB / 0.6497 GB, free: 37.8 MB / 0.5262 GB Notification: Performance of [SIM] Early Inline: time 8.651e-05/0.003478, allocations: 115 kB / 0.6498 GB, free: 37.71 MB / 0.5262 GB Notification: Performance of [SIM] Simplify 1: time 5.775e-05/0.003535, allocations: 57.27 kB / 0.6499 GB, free: 37.65 MB / 0.5262 GB Notification: Performance of [SIM] Alias: time 0.000288/0.003823, allocations: 143.8 kB / 0.65 GB, free: 37.5 MB / 0.5262 GB Notification: Performance of [SIM] Simplify 2: time 2.816e-05/0.003851, allocations: 43.45 kB / 0.6501 GB, free: 37.45 MB / 0.5262 GB Notification: Performance of [SIM] Remove Stream: time 2.031e-05/0.003872, allocations: 45.08 kB / 0.6501 GB, free: 37.39 MB / 0.5262 GB Notification: Performance of [SIM] Detect States: time 7.616e-05/0.003948, allocations: 93.8 kB / 0.6502 GB, free: 37.27 MB / 0.5262 GB Notification: Performance of [SIM] Events: time 6.057e-05/0.004008, allocations: 19.94 kB / 0.6502 GB, free: 37.26 MB / 0.5262 GB Notification: Performance of [SIM] Partitioning: time 0.0001076/0.004116, allocations: 121 kB / 0.6503 GB, free: 37.13 MB / 0.5262 GB Notification: Performance of [SIM] Causalize: time 0.0001293/0.004245, allocations: 101.6 kB / 0.6504 GB, free: 37.07 MB / 0.5262 GB Notification: Performance of [SIM] After Index Reduction Inline: time 5.023e-05/0.004296, allocations: 75.23 kB / 0.6505 GB, free: 37.04 MB / 0.5262 GB Notification: Performance of [INI] Simplify: time 9.237e-05/0.004388, allocations: 94.25 kB / 0.6506 GB, free: 36.93 MB / 0.5262 GB Notification: Performance of [INI] Inline: time 7.832e-05/0.004466, allocations: 109.4 kB / 0.6507 GB, free: 36.88 MB / 0.5262 GB Notification: Performance of [INI] Partitioning: time 8.145e-06/0.004474, allocations: 12.02 kB / 0.6507 GB, free: 36.86 MB / 0.5262 GB Notification: Performance of [INI] Cleanup: time 2.495e-05/0.004499, allocations: 24.69 kB / 0.6507 GB, free: 36.85 MB / 0.5262 GB Notification: Performance of [INI] Causalize: time 0.0001214/0.004621, allocations: 86.59 kB / 0.6508 GB, free: 36.81 MB / 0.5262 GB Notification: Performance of [INI] Tearing: time 9.177e-06/0.00463, allocations: 6 kB / 0.6508 GB, free: 36.8 MB / 0.5262 GB Notification: Performance of [SIM] Initialization: time 1.142e-06/0.004631, allocations: 1.188 kB / 0.6508 GB, free: 36.8 MB / 0.5262 GB Notification: Performance of [SIM] Remove Dummies: time 3.386e-06/0.004635, allocations: 0 / 0.6508 GB, free: 36.8 MB / 0.5262 GB Notification: Performance of [SIM] Tearing: time 1.794e-06/0.004636, allocations: 6.312 kB / 0.6508 GB, free: 36.8 MB / 0.5262 GB Notification: Performance of [SIM] Categorize: time 7.263e-06/0.004644, allocations: 2.781 kB / 0.6508 GB, free: 36.8 MB / 0.5262 GB Notification: Performance of [SIM] Solve: time 8.566e-05/0.004729, allocations: 47 kB / 0.6509 GB, free: 36.79 MB / 0.5262 GB Notification: Performance of [SIM] Jacobian: time 7.604e-06/0.004737, allocations: 1.281 kB / 0.6509 GB, free: 36.79 MB / 0.5262 GB Notification: Performance of [SIM] Minimize Homotopy System: time 3.51e-07/0.004737, allocations: 0 / 0.6509 GB, free: 36.79 MB / 0.5262 GB Notification: Partition statistics after passing the back-end: * Number of ODE partitions: ..................... 0 * Number of algebraic partitions: ............... 1 * Number of ODE event partitions: ............... 0 * Number of algebraic event partitions: ......... 2 * Number of clocked partitions: ................. 0 * Number of initial partitions: ................. 1 * Number of initial(lambda=0) partitions: ....... 0 Notification: Variable statistics after passing the back-end: * Number of states: ............................. 0 (0) {} * Number of discrete states: .................... 0 (0) {} * Number of clocked states: ..................... 0 (0) {} * Number of discrete variables: ................. 2 (2) {$SEV_0, $TEV_0} * Number of clocks: ............................. 0 (0) {} * Number of top-level inputs: ................... 0 (0) {} Notification: [Simulation] Strong Component statistics after passing the back-end: * Number of single strong components: ........... 6 (scalar:6, array:0, record:0) * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0) * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0) * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0) Notification: [Initialization] Strong Component statistics after passing the back-end: * Number of single strong components: ........... 6 (scalar:6, array:0, record:0) * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0) * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0) * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0) Notification: Performance of backend: time 3.31e-05/0.00477, allocations: 26.06 kB / 0.6509 GB, free: 36.79 MB / 0.5262 GB Notification: Performance of SimCode: time 0.0002809/0.005051, allocations: 195.6 kB / 0.6511 GB, free: 36.64 MB / 0.5262 GB Notification: Performance of Templates: time 0.003113/0.008164, allocations: 473.5 kB / 0.6515 GB, free: 36.6 MB / 0.5262 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Systems.PKOneCompartmentEquations.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 7.792679762933403]