Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.002238/0.002238, allocations: 91.55 kB / 20.19 MB, free: 4.359 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00282/0.00282, allocations: 168.9 kB / 23.49 MB, free: 1.055 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.484/1.484, allocations: 177.1 MB / 203.8 MB, free: 5.586 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.301/3.301, allocations: 274.5 MB / 0.5222 GB, free: 14.16 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver,tolerance=1e-06,outputFormat="empty",numberOfIntervals=495,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver")
translateModel(Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver,tolerance=1e-06,outputFormat="empty",numberOfIntervals=495,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver") [Timeout 660]
"Notification: Performance of FrontEnd - Absyn->SCode: time 1.341e-05/1.341e-05, allocations: 6.25 kB / 0.6479 GB, free: 39.07 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver): time 0.003643/0.003656, allocations: 4.093 MB / 0.6519 GB, free: 36.43 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001256/0.004912, allocations: 0.9651 MB / 0.6528 GB, free: 35.78 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001368/0.005049, allocations: 4 kB / 0.6528 GB, free: 35.78 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001585/0.005207, allocations: 83.92 kB / 0.6529 GB, free: 35.73 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0003864/0.005594, allocations: 209.1 kB / 0.6531 GB, free: 35.61 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0002621/0.005856, allocations: 156.3 kB / 0.6533 GB, free: 35.51 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0005251/0.006381, allocations: 0.7936 MB / 0.654 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.000473/0.006854, allocations: 493 kB / 0.6545 GB, free: 34.82 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0004045/0.007258, allocations: 493.3 kB / 0.655 GB, free: 34.62 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0004215/0.00768, allocations: 338.9 kB / 0.6553 GB, free: 34.52 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 9.895e-05/0.007779, allocations: 75.44 kB / 0.6554 GB, free: 34.52 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.000121/0.0079, allocations: 77.44 kB / 0.6554 GB, free: 34.52 MB / 0.5262 GB
Notification: Performance of combineBinaries: time 0.0008219/0.008722, allocations: 1.049 MB / 0.6565 GB, free: 33.94 MB / 0.5262 GB
Notification: Performance of replaceArrayConstructors: time 0.0002247/0.008947, allocations: 477.2 kB / 0.6569 GB, free: 33.67 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 9.255e-05/0.009039, allocations: 60.66 kB / 0.657 GB, free: 33.67 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 3.705e-05/0.009076, allocations: 12.09 kB / 0.657 GB, free: 33.67 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 124 (119)
 * Number of variables: 124 (119)
Notification: Performance of [SIM] Bindings: time 0.001842/0.01092, allocations: 2.614 MB / 0.6595 GB, free: 31.95 MB / 0.5262 GB
Notification: Performance of [SIM] FunctionAlias: time 0.0004159/0.01133, allocations: 0.6129 MB / 0.6601 GB, free: 31.64 MB / 0.5262 GB
Notification: Performance of [SIM] Early Inline: time 0.001244/0.01258, allocations: 2.069 MB / 0.6622 GB, free: 30.39 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 1: time 0.0004472/0.01302, allocations: 384.9 kB / 0.6625 GB, free: 30.25 MB / 0.5262 GB
Notification: Performance of [SIM] Alias: time 0.002482/0.01551, allocations: 2.549 MB / 0.665 GB, free: 28.74 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 2: time 0.0003343/0.01584, allocations: 317.2 kB / 0.6653 GB, free: 28.6 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Stream: time 0.0003132/0.01615, allocations: 369.7 kB / 0.6657 GB, free: 28.4 MB / 0.5262 GB
Notification: Performance of [SIM] Detect States: time 0.0005472/0.0167, allocations: 0.6208 MB / 0.6663 GB, free: 28 MB / 0.5262 GB
Notification: Performance of [SIM] Events: time 0.0002977/0.017, allocations: 326.2 kB / 0.6666 GB, free: 27.86 MB / 0.5262 GB
Notification: Performance of [SIM] Partitioning: time 0.000679/0.01768, allocations: 0.7744 MB / 0.6673 GB, free: 27.46 MB / 0.5262 GB
Notification: Performance of [SIM] Causalize: time 0.0009916/0.01867, allocations: 0.8041 MB / 0.6681 GB, free: 27.2 MB / 0.5262 GB
Notification: Performance of [SIM] After Index Reduction Inline: time 0.000888/0.01956, allocations: 1.335 MB / 0.6694 GB, free: 26.49 MB / 0.5262 GB
Notification: Performance of [INI] Simplify: time 0.0009529/0.02051, allocations: 0.7769 MB / 0.6702 GB, free: 26.1 MB / 0.5262 GB
Notification: Performance of [INI] Inline: time 0.001391/0.0219, allocations: 2.048 MB / 0.6722 GB, free: 24.99 MB / 0.5262 GB
Notification: Performance of [INI] Partitioning: time 6.176e-05/0.02196, allocations: 46 kB / 0.6722 GB, free: 24.95 MB / 0.5262 GB
Notification: Performance of [INI] Cleanup: time 0.0003469/0.02231, allocations: 468.9 kB / 0.6727 GB, free: 24.69 MB / 0.5262 GB
Notification: Performance of [INI] Causalize: time 0.002689/0.025, allocations: 2.153 MB / 0.6748 GB, free: 23.96 MB / 0.5262 GB
Notification: Performance of [INI] Tearing: time 2.513e-05/0.02502, allocations: 53.22 kB / 0.6748 GB, free: 23.92 MB / 0.5262 GB
Notification: Performance of [SIM] Initialization: time 5.81e-07/0.02502, allocations: 0 / 0.6748 GB, free: 23.92 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Dummies: time 6.953e-06/0.02503, allocations: 2.25 kB / 0.6748 GB, free: 23.92 MB / 0.5262 GB
Notification: Performance of [SIM] Tearing: time 1.028e-05/0.02504, allocations: 36.28 kB / 0.6749 GB, free: 23.89 MB / 0.5262 GB
Notification: Performance of [SIM] Categorize: time 7.854e-06/0.02505, allocations: 7.25 kB / 0.6749 GB, free: 23.89 MB / 0.5262 GB
Notification: Performance of [SIM] Solve: time 0.001465/0.02652, allocations: 1.242 MB / 0.6761 GB, free: 23.5 MB / 0.5262 GB
Notification: Performance of [SIM] Jacobian: time 0.000783/0.0273, allocations: 0.603 MB / 0.6767 GB, free: 23.22 MB / 0.5262 GB
Notification: Performance of [SIM] Minimize Homotopy System: time 6.02e-07/0.0273, allocations: 0 / 0.6767 GB, free: 23.22 MB / 0.5262 GB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 14 (14) {singleDose1.variableDose.TotalCumulativeMass, singleDose1.TotalCumulativeMass, artery.M, artery.AUC, gut.M, gut.AUC, vein.M, vein.AUC, spleen.M, spleen.AUC, liver.M, liver.AUC, lungs.M, lungs.AUC}
 * Number of discrete states: .................... 2 (2) {singleDose1.pulse.T_start, singleDose1.pulse.count}
 * Number of clocked states: ..................... 0 (0) {}
 * Number of discrete variables: ................. 11 (11) {$SEV_10, $SEV_9, $SEV_8, $SEV_7, $SEV_6, $SEV_5, $SEV_4, $SEV_3, $SEV_2, $SEV_1, $SEV_0}
 * Number of clocks: ............................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 67 (scalar:67, array:0, record:0)
 * Number of multi strong components: ............ 2 (algorithm:0, when:2, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 106 (scalar:106, array:0, record:0)
 * Number of multi strong components: ............ 1 (algorithm:1, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: Performance of backend: time 4.572e-05/0.02734, allocations: 54.19 kB / 0.6767 GB, free: 23.19 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.00146/0.0288, allocations: 1.281 MB / 0.678 GB, free: 22.5 MB / 0.5262 GB
Notification: Performance of Templates: time 0.009148/0.03795, allocations: 5.422 MB / 0.6833 GB, free: 20.23 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseVeinsGutSpleenPortalVeinLiver.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 9.9196526769083]