Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001795/0.001795, allocations: 91.55 kB / 20.19 MB, free: 4.336 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001918/0.001918, allocations: 168.9 kB / 23.49 MB, free: 1.031 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.48/1.48, allocations: 177.1 MB / 203.8 MB, free: 5.621 MB / 186.7 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 3.258/3.258, allocations: 274.5 MB / 0.5222 GB, free: 14.13 MB / 458.7 MB
"
[Timeout remaining time 176]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody")
translateModel(Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody") [Timeout 660]
"Notification: Performance of FrontEnd - Absyn->SCode: time 1.567e-05/1.567e-05, allocations: 2.312 kB / 0.6479 GB, free: 39.13 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody): time 0.005848/0.005864, allocations: 7.504 MB / 0.6552 GB, free: 34.23 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.002475/0.008339, allocations: 1.554 MB / 0.6567 GB, free: 33.16 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0002974/0.008636, allocations: 15.84 kB / 0.6568 GB, free: 33.16 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002939/0.00893, allocations: 172.6 kB / 0.6569 GB, free: 33.06 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.000663/0.009593, allocations: 429.2 kB / 0.6573 GB, free: 32.75 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0005553/0.01015, allocations: 332.5 kB / 0.6576 GB, free: 32.57 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.001301/0.01145, allocations: 1.717 MB / 0.6593 GB, free: 31.68 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.001547/0.013, allocations: 1.84 MB / 0.6611 GB, free: 30.6 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.001321/0.01432, allocations: 1.449 MB / 0.6625 GB, free: 30.02 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.001283/0.0156, allocations: 1.061 MB / 0.6636 GB, free: 29.71 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 0.0003212/0.01592, allocations: 245 kB / 0.6638 GB, free: 29.71 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.000389/0.01631, allocations: 240.8 kB / 0.664 GB, free: 29.71 MB / 0.5262 GB
Notification: Performance of combineBinaries: time 0.001705/0.01802, allocations: 2.742 MB / 0.6667 GB, free: 28.26 MB / 0.5262 GB
Notification: Performance of replaceArrayConstructors: time 0.0004692/0.01848, allocations: 1.011 MB / 0.6677 GB, free: 27.66 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0002574/0.01874, allocations: 135.1 kB / 0.6678 GB, free: 27.66 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 0.0001176/0.01886, allocations: 22.56 kB / 0.6679 GB, free: 27.66 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 267 (267)
 * Number of variables: 267 (267)
Notification: Performance of [SIM] Bindings: time 0.004498/0.02336, allocations: 6.595 MB / 0.6743 GB, free: 23.48 MB / 0.5262 GB
Notification: Performance of [SIM] FunctionAlias: time 0.001838/0.0252, allocations: 2.24 MB / 0.6765 GB, free: 22.41 MB / 0.5262 GB
Notification: Performance of [SIM] Early Inline: time 0.005321/0.03052, allocations: 6.574 MB / 0.6829 GB, free: 18.2 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 1: time 0.001881/0.0324, allocations: 1.381 MB / 0.6842 GB, free: 17.45 MB / 0.5262 GB
Notification: Performance of [SIM] Alias: time 0.006882/0.03928, allocations: 6.512 MB / 0.6906 GB, free: 12.64 MB / 0.5262 GB
Notification: Performance of [SIM] Simplify 2: time 0.001527/0.04081, allocations: 1.346 MB / 0.6919 GB, free: 11.9 MB / 0.5262 GB
Notification: Performance of [SIM] Remove Stream: time 0.001442/0.04225, allocations: 1.683 MB / 0.6936 GB, free: 10.64 MB / 0.5262 GB
Notification: Performance of [SIM] Detect States: time 0.001294/0.04354, allocations: 1.838 MB / 0.6954 GB, free: 8.746 MB / 0.5262 GB
Notification: Performance of [SIM] Events: time 0.0007524/0.04429, allocations: 1.07 MB / 0.6964 GB, free: 7.66 MB / 0.5262 GB
Notification: Performance of [SIM] Partitioning: time 0.001666/0.04596, allocations: 2.382 MB / 0.6987 GB, free: 5.203 MB / 0.5262 GB
Notification: Performance of [SIM] Causalize: time 0.002195/0.04816, allocations: 1.995 MB / 0.7007 GB, free: 3.188 MB / 0.5262 GB
Notification: Performance of [SIM] After Index Reduction Inline: time 0.0032/0.05135, allocations: 4.496 MB / 0.7051 GB, free: 14.69 MB / 0.5418 GB
Notification: Performance of [INI] Simplify: time 0.004008/0.05536, allocations: 2.413 MB / 0.7074 GB, free: 12.25 MB / 0.5418 GB
Notification: Performance of [INI] Inline: time 0.007782/0.06315, allocations: 6.929 MB / 0.7142 GB, free: 5.301 MB / 0.5418 GB
Notification: Performance of [INI] Partitioning: time 0.0002461/0.06339, allocations: 68.06 kB / 0.7143 GB, free: 5.219 MB / 0.5418 GB
Notification: Performance of [INI] Cleanup: time 0.002119/0.06551, allocations: 1.557 MB / 0.7158 GB, free: 3.66 MB / 0.5418 GB
Notification: Performance of [INI] Causalize: time 0.008606/0.07412, allocations: 5.224 MB / 0.7209 GB, free: 14.3 MB / 0.5574 GB
Notification: Performance of [INI] Tearing: time 9.37e-05/0.07421, allocations: 112 kB / 0.721 GB, free: 14.19 MB / 0.5574 GB
Notification: Performance of [SIM] Initialization: time 9.22e-07/0.07421, allocations: 4 kB / 0.721 GB, free: 14.19 MB / 0.5574 GB
Notification: Performance of [SIM] Remove Dummies: time 1.756e-05/0.07423, allocations: 1.312 kB / 0.721 GB, free: 14.19 MB / 0.5574 GB
Notification: Performance of [SIM] Tearing: time 5.166e-05/0.07428, allocations: 68 kB / 0.7211 GB, free: 14.12 MB / 0.5574 GB
Notification: Performance of [SIM] Categorize: time 1.555e-05/0.0743, allocations: 7.938 kB / 0.7211 GB, free: 14.11 MB / 0.5574 GB
Notification: Performance of [SIM] Solve: time 0.007377/0.08167, allocations: 5.26 MB / 0.7262 GB, free: 8.895 MB / 0.5574 GB
Notification: Performance of [SIM] Jacobian: time 0.002834/0.08451, allocations: 1.539 MB / 0.7277 GB, free: 7.289 MB / 0.5574 GB
Notification: Performance of [SIM] Minimize Homotopy System: time 1.082e-06/0.08451, allocations: 0 / 0.7277 GB, free: 7.289 MB / 0.5574 GB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 30 (30) {singleDose.variableDose.TotalCumulativeMass, singleDose.TotalCumulativeMass, venous.M, venous.AUC, lungs.M, lungs.AUC, arterial.M, arterial.AUC, adipose.M, adipose.AUC, bone.M, bone.AUC, brain.M, brain.AUC, heart.M, heart.AUC, muscle.M, muscle.AUC, skin.M, skin.AUC, gut.M, gut.AUC, spleen.M, spleen.AUC, liver.M, liver.AUC, kidney.M, kidney.AUC, kidneyElim.MExc, liverElim.MExc}
 * Number of discrete states: .................... 2 (2) {singleDose.pulse.T_start, singleDose.pulse.count}
 * Number of clocked states: ..................... 0 (0) {}
 * Number of discrete variables: ................. 27 (27) {$SEV_26, $SEV_25, $SEV_24, $SEV_23, $SEV_22, $SEV_21, $SEV_20, $SEV_19, $SEV_18, $SEV_17, $SEV_16, $SEV_15, $SEV_14, $SEV_13, $SEV_12, $SEV_11, $SEV_10, $SEV_9, $SEV_8, $SEV_7, $SEV_6, $SEV_5, $SEV_4, $SEV_3, $SEV_2, $SEV_1, $SEV_0}
 * Number of clocks: ............................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 130 (scalar:130, array:0, record:0)
 * Number of multi strong components: ............ 2 (algorithm:0, when:2, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 222 (scalar:222, array:0, record:0)
 * Number of multi strong components: ............ 1 (algorithm:1, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (resizable: 0, generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: Performance of backend: time 0.0001175/0.08463, allocations: 90.52 kB / 0.7278 GB, free: 7.215 MB / 0.5574 GB
Notification: Performance of SimCode: time 0.004134/0.08876, allocations: 2.655 MB / 0.7304 GB, free: 4.477 MB / 0.5574 GB
Notification: Performance of Templates: time 0.02924/0.118, allocations: 17.04 MB / 0.747 GB, free: 3.66 MB / 0.573 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.SingleDoseIntravenousWholeBody.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 18.959770073881373]