Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001467/0.001467, allocations: 104.3 kB / 19.72 MB, free: 2.145 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001568/0.001568, allocations: 209.4 kB / 23 MB, free: 4.965 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.361/1.361, allocations: 230.6 MB / 256.8 MB, free: 7.785 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1321/0.1321, allocations: 23.92 MB / 337.1 MB, free: 10.9 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation,tolerance=1e-05,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation") [Timeout 660]
"Notification: Performance of FrontEnd - Absyn->SCode: time 2.374e-05/2.374e-05, allocations: 5.516 kB / 472.4 MB, free: 6.949 MB / 334.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinCarboxylation): time 0.08604/0.08606, allocations: 39.99 MB / 0.5004 GB, free: 15.04 MB / 382.1 MB
Notification: Performance of NFInst.instExpressions: time 0.2425/0.3286, allocations: 64.1 MB / 0.563 GB, free: 8.914 MB / 382.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.003621/0.3322, allocations: 78.03 kB / 0.5631 GB, free: 8.875 MB / 382.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.003716/0.3359, allocations: 1.48 MB / 0.5645 GB, free: 7.742 MB / 382.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.01605/0.352, allocations: 5.985 MB / 0.5704 GB, free: 3.176 MB / 382.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.02687/0.3788, allocations: 10.4 MB / 0.5805 GB, free: 11.09 MB / 398.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0314/0.4102, allocations: 30.18 MB / 0.61 GB, free: 13.21 MB / 430.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.01879/0.429, allocations: 12.66 MB / 0.6224 GB, free: 476 kB / 430.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.01813/0.4472, allocations: 10.55 MB / 0.6327 GB, free: 5.902 MB / 446.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.01886/0.466, allocations: 10.62 MB / 0.643 GB, free: 11.3 MB / 462.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.006823/0.4729, allocations: 1.949 MB / 0.6449 GB, free: 9.352 MB / 462.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.02987/0.5027, allocations: 9.355 MB / 0.6541 GB, free: 15.98 MB / 478.1 MB
Notification: Performance of combineBinaries: time 0.03221/0.5349, allocations: 22.13 MB / 0.6757 GB, free: 9.734 MB / 494.1 MB
Notification: Performance of replaceArrayConstructors: time 0.01261/0.5475, allocations: 9.818 MB / 0.6853 GB, free: 15.84 MB / 0.4981 GB
Notification: Performance of NFVerifyModel.verify: time 0.00503/0.5526, allocations: 0.6484 MB / 0.6859 GB, free: 15.2 MB / 0.4981 GB
Notification: Performance of FrontEnd: time 0.001116/0.5537, allocations: 251.5 kB / 0.6861 GB, free: 14.95 MB / 0.4981 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3808 (1968)
 * Number of variables: 3808 (1240)
Notification: Performance of [SIM] Bindings: time 0.3254/0.8791, allocations: 68.12 MB / 0.7527 GB, free: 72.27 MB / 0.5137 GB
Notification: Performance of [SIM] FunctionAlias: time 0.01803/0.8972, allocations: 11.22 MB / 0.7636 GB, free: 67.29 MB / 0.5137 GB
Notification: Performance of [SIM] Early Inline: time 0.083/0.9801, allocations: 70.42 MB / 0.8324 GB, free: 26.52 MB / 0.5137 GB
Notification: Performance of [SIM] Simplify 1: time 0.01996/1, allocations: 9.481 MB / 0.8416 GB, free: 18.86 MB / 0.5137 GB
Warning: NBAlias.setStartFixed: Alias set with conflicting unfixed start values detected. Use -d=dumprepl for more information.
Notification: Performance of [SIM] Alias: time 0.05819/1.058, allocations: 36.69 MB / 0.8775 GB, free: 14.51 MB / 0.545 GB
Notification: Performance of [SIM] Simplify 2: time 0.01756/1.076, allocations: 9.392 MB / 0.8866 GB, free: 5.188 MB / 0.545 GB
Notification: Performance of [SIM] Remove Stream: time 0.01429/1.09, allocations: 8.384 MB / 0.8948 GB, free: 13.67 MB / 0.5606 GB
Notification: Performance of [SIM] Detect States: time 0.0215/1.112, allocations: 12.3 MB / 0.9069 GB, free: 1.711 MB / 0.5606 GB
Notification: Performance of [SIM] Events: time 0.007615/1.119, allocations: 3.489 MB / 0.9103 GB, free: 14.38 MB / 0.5762 GB
Notification: Performance of [SIM] Partitioning: time 0.2704/1.39, allocations: 23.24 MB / 0.9329 GB, free: 118.6 MB / 0.5762 GB
Error: Internal error NBResolveSingularities.indexReduction failed because slicing during index reduction is not yet supported.
  needed sliced dummy:		[STAT] (4) flow Real[4] tensed.HmNHCOO.solution.dV
	slice: {0}
"
[Timeout remaining time 658]
[Calling sys.exit(0), Time elapsed: 4.266914434731007]
Failed to read output from testmodel.py, exit status != 0:
1.9409924438223243 1.950591273 1.3944291309999999
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f80f7fd2f20>