Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.GMO.cell.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.GMO.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GMO.cell")
translateModel(BioChem.Examples.GMO.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.GMO.cell")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001226/0.001226, allocations: 107.3 kB / 16.42 MB, free: 5.973 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001231/0.001231, allocations: 191.3 kB / 17.36 MB, free: 5.566 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.373/1.373, allocations: 222.9 MB / 241 MB, free: 15.15 MB / 206.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.1493/0.1493, allocations: 12.28 MB / 303.5 MB, free: 3.199 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - Absyn->SCode: time 2.676e-05/2.677e-05, allocations: 6.281 kB / 420.7 MB, free: 17.04 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.GMO.cell): time 0.006415/0.00645, allocations: 4.308 MB / 425 MB, free: 12.73 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.0009098/0.007374, allocations: 299.1 kB / 425.3 MB, free: 12.44 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0003075/0.007691, allocations: 17.59 kB / 425.3 MB, free: 12.42 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0002179/0.007915, allocations: 51.61 kB / 425.3 MB, free: 12.37 MB / 302.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.0003367/0.008276, allocations: 76.17 kB / 425.4 MB, free: 12.3 MB / 302.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0003232/0.008607, allocations: 74.03 kB / 425.5 MB, free: 12.23 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0007112/0.009327, allocations: 346.7 kB / 425.8 MB, free: 11.89 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0004633/0.009805, allocations: 171.9 kB / 426 MB, free: 11.73 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0003264/0.01014, allocations: 131.6 kB / 426.1 MB, free: 11.6 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002438/0.0104, allocations: 151.3 kB / 426.3 MB, free: 11.45 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 7.355e-05/0.01048, allocations: 36 kB / 426.3 MB, free: 11.41 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 7.155e-05/0.01056, allocations: 36 kB / 426.3 MB, free: 11.38 MB / 302.1 MB
Notification: Performance of combineBinaries: time 0.0003973/0.01096, allocations: 0.4982 MB / 426.8 MB, free: 10.88 MB / 302.1 MB
Notification: Performance of replaceArrayConstructors: time 0.0002091/0.01118, allocations: 319.1 kB / 427.1 MB, free: 10.56 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.000151/0.01134, allocations: 59.75 kB / 427.2 MB, free: 10.5 MB / 302.1 MB
Notification: Performance of FrontEnd: time 0.0001099/0.01146, allocations: 11.94 kB / 427.2 MB, free: 10.49 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 96 (96)
 * Number of variables: 96 (96)
Notification: Performance of Bindings: time 0.001788/0.01325, allocations: 1.606 MB / 428.8 MB, free: 8.77 MB / 302.1 MB
Notification: Performance of FunctionAlias: time 0.000204/0.01346, allocations: 75.92 kB / 428.9 MB, free: 8.695 MB / 302.1 MB
Notification: Performance of Early Inline: time 0.001017/0.01449, allocations: 0.8703 MB / 429.8 MB, free: 7.797 MB / 302.1 MB
Notification: Performance of simplify1: time 0.0001309/0.01463, allocations: 87.84 kB / 429.8 MB, free: 7.711 MB / 302.1 MB
Notification: Performance of Alias: time 0.002526/0.01716, allocations: 2.067 MB / 431.9 MB, free: 5.414 MB / 302.1 MB
Notification: Performance of simplify2: time 6.016e-05/0.01724, allocations: 43.94 kB / 432 MB, free: 5.371 MB / 302.1 MB
Notification: Performance of Events: time 3.819e-05/0.01728, allocations: 43.91 kB / 432 MB, free: 5.328 MB / 302.1 MB
Notification: Performance of Detect States: time 0.0002478/0.01754, allocations: 163.4 kB / 432.2 MB, free: 5.152 MB / 302.1 MB
Notification: Performance of Partitioning: time 0.0002441/0.01779, allocations: 212.3 kB / 432.4 MB, free: 4.941 MB / 302.1 MB
Notification: Performance of Causalize: time 0.0008129/0.01861, allocations: 0.7738 MB / 433.1 MB, free: 4.156 MB / 302.1 MB
Notification: Performance of After Index Reduction Inline: time 0.0003123/0.01893, allocations: 419.5 kB / 433.5 MB, free: 3.719 MB / 302.1 MB
Notification: Performance of Inline: time 0.0004492/0.01939, allocations: 0.6237 MB / 434.2 MB, free: 3.062 MB / 302.1 MB
Notification: Performance of Partitioning: time 3.615e-05/0.01943, allocations: 46.38 kB / 434.2 MB, free: 3.008 MB / 302.1 MB
Notification: Performance of Cleanup: time 2.283e-05/0.01946, allocations: 27.97 kB / 434.2 MB, free: 2.98 MB / 302.1 MB
Notification: Performance of Causalize: time 0.001492/0.02096, allocations: 1.662 MB / 435.9 MB, free: 1.309 MB / 302.1 MB
Notification: Performance of Tearing: time 8.025e-06/0.02097, allocations: 0 / 435.9 MB, free: 1.309 MB / 302.1 MB
Notification: Performance of Initialization: time 3.11e-07/0.02098, allocations: 3.938 kB / 435.9 MB, free: 1.305 MB / 302.1 MB
Notification: Performance of Tearing: time 1.543e-06/0.02099, allocations: 0 / 435.9 MB, free: 1.305 MB / 302.1 MB
Notification: Performance of Categorize: time 1.204e-05/0.021, allocations: 4 kB / 435.9 MB, free: 1.301 MB / 302.1 MB
Notification: Performance of Solve: time 0.0003529/0.02136, allocations: 414.3 kB / 436.3 MB, free: 0.8477 MB / 302.1 MB
Notification: Performance of Jacobian: time 0.0002447/0.02161, allocations: 439.7 kB / 436.7 MB, free: 392 kB / 302.1 MB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 5 (5) {C.n, M.n, X.n, ambientSubstance.n, cell_V}
 * Number of discrete states: .................... 0 (0) {}
 * Number of clocked states: ..................... 0 (0) {NOT YET AVAILABLE}
 * Number of discrete variables: ................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 36 (scalar:36, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 40 (scalar:40, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 1 (linear: 0, nonlinear:1)
Notification: Performance of backend: time 4.428e-05/0.02167, allocations: 32.34 kB / 436.8 MB, free: 368 kB / 302.1 MB
Notification: Performance of SimCode: time 0.001254/0.02293, allocations: 1.497 MB / 438.3 MB, free: 14.84 MB / 318.1 MB
Notification: Performance of Templates: time 0.004484/0.02742, allocations: 1.635 MB / 439.9 MB, free: 13.21 MB / 318.1 MB
make -j1 -f BioChem_BioChem.Examples.GMO.cell.makefile
(rm -f BioChem_BioChem.Examples.GMO.cell.pipe ; mkfifo BioChem_BioChem.Examples.GMO.cell.pipe ; head -c 1048576 < BioChem_BioChem.Examples.GMO.cell.pipe >> ../files/BioChem_BioChem.Examples.GMO.cell.sim & ./BioChem_BioChem.Examples.GMO.cell  -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.GMO.cell.pipe 2>&1)