Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.CaOscillations.Cytosol.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.CaOscillations.Cytosol,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CaOscillations.Cytosol")
translateModel(BioChem.Examples.CaOscillations.Cytosol,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CaOscillations.Cytosol")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001193/0.001194, allocations: 107.9 kB / 16.42 MB, free: 6.512 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001057/0.001057, allocations: 196.2 kB / 17.35 MB, free: 5.754 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.383/1.383, allocations: 222.9 MB / 241 MB, free: 15.15 MB / 206.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.0578/0.0578, allocations: 12.29 MB / 303.5 MB, free: 3.215 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - Absyn->SCode: time 2.136e-05/2.137e-05, allocations: 2.281 kB / 420.7 MB, free: 17.08 MB / 302.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.CaOscillations.Cytosol): time 0.003521/0.00355, allocations: 2.816 MB / 423.5 MB, free: 14.26 MB / 302.1 MB
Notification: Performance of NFInst.instExpressions: time 0.0002112/0.003773, allocations: 190.2 kB / 423.7 MB, free: 14.08 MB / 302.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 7.823e-05/0.00386, allocations: 8 kB / 423.7 MB, free: 14.07 MB / 302.1 MB
Notification: Performance of NFTyping.typeComponents: time 7.296e-05/0.003938, allocations: 31.69 kB / 423.7 MB, free: 14.04 MB / 302.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.0001287/0.00408, allocations: 48.44 kB / 423.7 MB, free: 13.99 MB / 302.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0001802/0.004266, allocations: 40.98 kB / 423.8 MB, free: 13.95 MB / 302.1 MB
Notification: Performance of NFFlatten.flatten: time 0.0001717/0.004446, allocations: 221.2 kB / 424 MB, free: 13.74 MB / 302.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0002085/0.004661, allocations: 114.8 kB / 424.1 MB, free: 13.62 MB / 302.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 6.517e-05/0.004733, allocations: 79.66 kB / 424.2 MB, free: 13.54 MB / 302.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.000106/0.004845, allocations: 98.58 kB / 424.3 MB, free: 13.45 MB / 302.1 MB
Notification: Performance of NFPackage.collectConstants: time 2.853e-05/0.004879, allocations: 20 kB / 424.3 MB, free: 13.43 MB / 302.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 2.63e-05/0.00491, allocations: 24 kB / 424.3 MB, free: 13.41 MB / 302.1 MB
Notification: Performance of combineBinaries: time 0.0001721/0.005086, allocations: 343.9 kB / 424.7 MB, free: 13.07 MB / 302.1 MB
Notification: Performance of replaceArrayConstructors: time 5.9e-05/0.005151, allocations: 212.8 kB / 424.9 MB, free: 12.86 MB / 302.1 MB
Notification: Performance of NFVerifyModel.verify: time 3.177e-05/0.005188, allocations: 35.88 kB / 424.9 MB, free: 12.82 MB / 302.1 MB
Notification: Performance of FrontEnd: time 2.557e-05/0.005218, allocations: 7.938 kB / 424.9 MB, free: 12.81 MB / 302.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 60 (60)
 * Number of variables: 60 (60)
Notification: Performance of Bindings: time 0.0007336/0.005958, allocations: 1.12 MB / 426 MB, free: 11.59 MB / 302.1 MB
Notification: Performance of FunctionAlias: time 8.265e-05/0.006046, allocations: 63.88 kB / 426.1 MB, free: 11.53 MB / 302.1 MB
Notification: Performance of Early Inline: time 0.0003766/0.006429, allocations: 0.5854 MB / 426.7 MB, free: 10.92 MB / 302.1 MB
Notification: Performance of simplify1: time 4.045e-05/0.006475, allocations: 47.94 kB / 426.7 MB, free: 10.87 MB / 302.1 MB
Notification: Performance of Alias: time 0.001265/0.007745, allocations: 1.448 MB / 428.2 MB, free: 9.258 MB / 302.1 MB
Notification: Performance of simplify2: time 2.532e-05/0.007782, allocations: 27.97 kB / 428.2 MB, free: 9.23 MB / 302.1 MB
Notification: Performance of Events: time 2.583e-05/0.007813, allocations: 19.98 kB / 428.2 MB, free: 9.211 MB / 302.1 MB
Notification: Performance of Detect States: time 0.000303/0.008121, allocations: 135.9 kB / 428.4 MB, free: 9.062 MB / 302.1 MB
Notification: Performance of Partitioning: time 0.0001245/0.008253, allocations: 132.1 kB / 428.5 MB, free: 8.926 MB / 302.1 MB
Notification: Performance of Causalize: time 0.0003872/0.008647, allocations: 449.7 kB / 428.9 MB, free: 8.477 MB / 302.1 MB
Notification: Performance of After Index Reduction Inline: time 0.0001589/0.008813, allocations: 276.2 kB / 429.2 MB, free: 8.18 MB / 302.1 MB
Notification: Performance of Inline: time 0.0002884/0.009109, allocations: 432.1 kB / 429.6 MB, free: 7.723 MB / 302.1 MB
Notification: Performance of Partitioning: time 2.709e-05/0.009143, allocations: 40.05 kB / 429.7 MB, free: 7.676 MB / 302.1 MB
Notification: Performance of Cleanup: time 1.744e-05/0.009165, allocations: 15.97 kB / 429.7 MB, free: 7.66 MB / 302.1 MB
Notification: Performance of Causalize: time 0.0008988/0.01007, allocations: 1.031 MB / 430.7 MB, free: 6.629 MB / 302.1 MB
Notification: Performance of Tearing: time 6.021e-06/0.01008, allocations: 3.938 kB / 430.7 MB, free: 6.625 MB / 302.1 MB
Notification: Performance of Initialization: time 3.1e-07/0.01009, allocations: 0 / 430.7 MB, free: 6.625 MB / 302.1 MB
Notification: Performance of Tearing: time 1.513e-06/0.01009, allocations: 0 / 430.7 MB, free: 6.625 MB / 302.1 MB
Notification: Performance of Categorize: time 6.472e-06/0.0101, allocations: 4 kB / 430.7 MB, free: 6.621 MB / 302.1 MB
Notification: Performance of Solve: time 0.0004295/0.01054, allocations: 0.9059 MB / 431.6 MB, free: 5.566 MB / 302.1 MB
Notification: Performance of Jacobian: time 0.0001905/0.01074, allocations: 352.1 kB / 432 MB, free: 5.188 MB / 302.1 MB
Notification: Partition statistics after passing the back-end:
 * Number of ODE partitions: ..................... 0
 * Number of algebraic partitions: ............... 0
 * Number of ODE event partitions: ............... 1
 * Number of algebraic event partitions: ......... 0
 * Number of clocked partitions: ................. 0
 * Number of initial partitions: ................. 1
 * Number of initial(lambda=0) partitions: ....... 0
Notification: Variable statistics after passing the back-end:
 * Number of states: ............................. 5 (5) {endoplasmicReticulum.CaER.n, endoplasmicReticulum.Endoplasmic_Reticulum_V, Ca_Cyt.n, p3_sbml, Cytosol_V}
 * Number of discrete states: .................... 0 (0) {}
 * Number of clocked states: ..................... 0 (0) {NOT YET AVAILABLE}
 * Number of discrete variables: ................. 0 (0) {}
 * Number of top-level inputs: ................... 0 (0) {}
Notification: [Simulation] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 22 (scalar:22, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 0 (linear: 0, nonlinear:0)
Notification: [Initialization] Strong Component statistics after passing the back-end:
 * Number of single strong components: ........... 25 (scalar:25, array:0, record:0)
 * Number of multi strong components: ............ 0 (algorithm:0, when:0, if:0, tuple:0)
 * Number of for-loop strong components: ......... 0 (generic: 0, entwined:0)
 * Number of algebraic-loop strong components: ... 3 (linear: 0, nonlinear:3)
Notification: Performance of backend: time 3.843e-05/0.01078, allocations: 40.41 kB / 432 MB, free: 5.152 MB / 302.1 MB
Notification: Performance of SimCode: time 0.0007149/0.0115, allocations: 1.311 MB / 433.3 MB, free: 3.82 MB / 302.1 MB
Notification: Performance of Templates: time 0.003353/0.01487, allocations: 1.292 MB / 434.6 MB, free: 2.527 MB / 302.1 MB
make -j1 -f BioChem_BioChem.Examples.CaOscillations.Cytosol.makefile
(rm -f BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe ; mkfifo BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe ; head -c 1048576 < BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe >> ../files/BioChem_BioChem.Examples.CaOscillations.Cytosol.sim & ./BioChem_BioChem.Examples.CaOscillations.Cytosol  -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.CaOscillations.Cytosol.pipe 2>&1)