Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001112/0.001112, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001745/0.001745, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9689/0.9689, allocations: 177.1 MB / 203.8 MB, free: 5.605 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.545/1.545, allocations: 273.5 MB / 0.5213 GB, free: 14.82 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic,tolerance=1e-12,outputFormat="empty",numberOfIntervals=864,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic,tolerance=1e-12,outputFormat="empty",numberOfIntervals=864,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.204e-06/2.204e-06, allocations: 0 / 0.647 GB, free: 38.64 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 1.606e-05/1.826e-05, allocations: 2.312 kB / 0.647 GB, free: 38.63 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic): time 0.007538/0.007556, allocations: 13.35 MB / 0.66 GB, free: 29.88 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.002883/0.01044, allocations: 2.678 MB / 0.6626 GB, free: 27.99 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.0004271/0.01087, allocations: 22.16 kB / 0.6627 GB, free: 27.98 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.0003765/0.01124, allocations: 309.9 kB / 0.663 GB, free: 27.8 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.0008914/0.01213, allocations: 0.9093 MB / 0.6638 GB, free: 27.13 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.0006583/0.01279, allocations: 0.6693 MB / 0.6645 GB, free: 26.68 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.001544/0.01434, allocations: 3.271 MB / 0.6677 GB, free: 24.82 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.0004654/0.0148, allocations: 456.3 kB / 0.6681 GB, free: 24.55 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.0009764/0.01578, allocations: 1.653 MB / 0.6697 GB, free: 23.82 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.0007611/0.01654, allocations: 0.9418 MB / 0.6707 GB, free: 23.48 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0002225/0.01676, allocations: 282.1 kB / 0.6709 GB, free: 23.48 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.0002799/0.01704, allocations: 285.2 kB / 0.6712 GB, free: 23.48 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0002009/0.01724, allocations: 0.5112 MB / 0.6717 GB, free: 23.1 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.0006117/0.01785, allocations: 0.9498 MB / 0.6726 GB, free: 22.67 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.001169/0.01902, allocations: 1.913 MB / 0.6745 GB, free: 21.64 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 3.767e-06/0.01903, allocations: 1.438 kB / 0.6745 GB, free: 21.64 MB / 0.5262 GB Notification: Performance of FrontEnd: time 9.32e-07/0.01903, allocations: 0 / 0.6745 GB, free: 21.64 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 1.736e-05/0.01905, allocations: 0 / 0.6745 GB, free: 21.64 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 402 * Number of variables: 402 Notification: Performance of Generate backend data structure: time 0.002497/0.02154, allocations: 3.22 MB / 0.6776 GB, free: 19.23 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 3.813e-05/0.02158, allocations: 9.484 kB / 0.6777 GB, free: 19.23 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0003356/0.02192, allocations: 377.6 kB / 0.678 GB, free: 19.07 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.0008825/0.0228, allocations: 0.9556 MB / 0.6789 GB, free: 18.4 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 6.177e-05/0.02286, allocations: 123.6 kB / 0.6791 GB, free: 18.35 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0001887/0.02305, allocations: 195.8 kB / 0.6793 GB, free: 18.28 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.001702/0.02475, allocations: 1.817 MB / 0.681 GB, free: 17.19 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 5.427e-05/0.02481, allocations: 31.67 kB / 0.6811 GB, free: 17.17 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 9.236e-05/0.0249, allocations: 70.36 kB / 0.6811 GB, free: 17.12 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.215e-05/0.02492, allocations: 36.22 kB / 0.6812 GB, free: 17.12 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001255/0.02618, allocations: 1.353 MB / 0.6825 GB, free: 16.42 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.004144/0.03032, allocations: 5.13 MB / 0.6875 GB, free: 12.9 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001302/0.03162, allocations: 1.421 MB / 0.6889 GB, free: 11.92 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.000621/0.03224, allocations: 0.9216 MB / 0.6898 GB, free: 11.12 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 7.42e-05/0.03232, allocations: 38.94 kB / 0.6898 GB, free: 11.12 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.001327/0.03364, allocations: 2.644 MB / 0.6924 GB, free: 8.645 MB / 0.5262 GB Notification: Performance of pre-optimization done (n=264): time 3.547e-06/0.03365, allocations: 3.938 kB / 0.6924 GB, free: 8.641 MB / 0.5262 GB Notification: Performance of matching and sorting (n=282): time 0.006467/0.04011, allocations: 8.774 MB / 0.701 GB, free: 0.5586 MB / 0.5262 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0004103/0.04052, allocations: 1.648 MB / 0.7026 GB, free: 14.54 MB / 0.5418 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0009168/0.04144, allocations: 1.111 MB / 0.7037 GB, free: 13.39 MB / 0.5418 GB Notification: Performance of collectPreVariables (initialization): time 0.0001188/0.04156, allocations: 117.7 kB / 0.7038 GB, free: 13.27 MB / 0.5418 GB Notification: Performance of collectInitialEqns (initialization): time 0.0003784/0.04194, allocations: 0.7508 MB / 0.7045 GB, free: 12.51 MB / 0.5418 GB Notification: Performance of collectInitialBindings (initialization): time 0.0006123/0.04255, allocations: 0.9184 MB / 0.7054 GB, free: 11.59 MB / 0.5418 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000454/0.043, allocations: 482.6 kB / 0.7059 GB, free: 11.1 MB / 0.5418 GB Notification: Performance of setup shared object (initialization): time 8.541e-05/0.04309, allocations: 484.7 kB / 0.7063 GB, free: 10.62 MB / 0.5418 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.000916/0.04401, allocations: 1.179 MB / 0.7075 GB, free: 9.285 MB / 0.5418 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001294/0.0453, allocations: 2.224 MB / 0.7097 GB, free: 6.445 MB / 0.5418 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.00288/0.04818, allocations: 4.218 MB / 0.7138 GB, free: 1.422 MB / 0.5418 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.448e-06/0.04819, allocations: 4 kB / 0.7138 GB, free: 1.418 MB / 0.5418 GB Notification: Performance of matching and sorting (n=426) (initialization): time 0.002874/0.05106, allocations: 3.628 MB / 0.7173 GB, free: 13.48 MB / 0.5574 GB Notification: Performance of prepare postOptimizeDAE: time 0.0003399/0.0514, allocations: 0.6807 MB / 0.718 GB, free: 12.65 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.845e-05/0.05142, allocations: 20 kB / 0.718 GB, free: 12.63 MB / 0.5574 GB Notification: Performance of postOpt tearingSystem (initialization): time 3.475e-05/0.05146, allocations: 40 kB / 0.718 GB, free: 12.59 MB / 0.5574 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0012/0.05266, allocations: 0.6553 MB / 0.7187 GB, free: 11.94 MB / 0.5574 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 3.54e-05/0.05269, allocations: 51.84 kB / 0.7187 GB, free: 11.89 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0006774/0.05337, allocations: 140 kB / 0.7189 GB, free: 11.75 MB / 0.5574 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.000128/0.0535, allocations: 131.9 kB / 0.719 GB, free: 11.62 MB / 0.5574 GB Warning: Assuming fixed start value for the following 84 variables: ref_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 96 * Number of states: 0 () * Number of discrete variables: 174 ($PRE.patient.peripheral.Cmin,patient.peripheral.Cmin,$PRE.patient.peripheral.Cmax,patient.peripheral.Cmax,$PRE.patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.Cmin,$PRE.patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmax,$PRE.patient.central.Cmin,patient.central.Cmin,$PRE.patient.central.Cmax,patient.central.Cmax,$PRE.patient_high.peripheral.Cmin,patient_high.peripheral.Cmin,$PRE.patient_high.peripheral.Cmax,patient_high.peripheral.Cmax,$PRE.patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.Cmin,$PRE.patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmax,$PRE.patient_high.central.Cmin,patient_high.central.Cmin,$PRE.patient_high.central.Cmax,patient_high.central.Cmax,$PRE.patient_low.peripheral.Cmin,patient_low.peripheral.Cmin,$PRE.patient_low.peripheral.Cmax,patient_low.peripheral.Cmax,$PRE.patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.Cmin,$PRE.patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmax,$PRE.patient_low.central.Cmin,patient_low.central.Cmin,$PRE.patient_low.central.Cmax,patient_low.central.Cmax,$PRE.ref.peripheral.Cmin,ref.peripheral.Cmin,$PRE.ref.peripheral.Cmax,ref.peripheral.Cmax,$PRE.ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.Cmin,$PRE.ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmax,$PRE.ref.central.Cmin,ref.central.Cmin,$PRE.ref.central.Cmax,ref.central.Cmax,$PRE.ref_high.peripheral.Cmin,ref_high.peripheral.Cmin,$PRE.ref_high.peripheral.Cmax,ref_high.peripheral.Cmax,$PRE.ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.Cmin,$PRE.ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmax,$PRE.ref_high.central.Cmin,ref_high.central.Cmin,$PRE.ref_high.central.Cmax,ref_high.central.Cmax,$PRE.ref_low.peripheral.Cmin,ref_low.peripheral.Cmin,$PRE.ref_low.peripheral.Cmax,ref_low.peripheral.Cmax,$PRE.ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.Cmin,$PRE.ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmax,$PRE.ref_low.central.Cmin,ref_low.central.Cmin,$PRE.ref_low.central.Cmax,ref_low.central.Cmax,$PRE.patient.peripheral.rising,$PRE.patient.periodicDose.pulse.count,$PRE.patient.periodicDose.pulse.T_start,$PRE.patient.periodicDose.absorptionLumen.rising,$PRE.patient.central.rising,patient.peripheral.rising,patient.periodicDose.pulse.count,patient.periodicDose.pulse.T_start,patient.periodicDose.absorptionLumen.rising,patient.central.rising,$whenCondition41,$whenCondition40,$whenCondition39,$whenCondition38,$whenCondition37,$whenCondition36,$whenCondition42,$PRE.patient_high.peripheral.rising,$PRE.patient_high.periodicDose.pulse.count,$PRE.patient_high.periodicDose.pulse.T_start,$PRE.patient_high.periodicDose.absorptionLumen.rising,$PRE.patient_high.central.rising,patient_high.peripheral.rising,patient_high.periodicDose.pulse.count,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.rising,$whenCondition34,$whenCondition33,$whenCondition32,$whenCondition31,$whenCondition30,$whenCondition29,$whenCondition35,$PRE.patient_low.peripheral.rising,$PRE.patient_low.periodicDose.pulse.count,$PRE.patient_low.periodicDose.pulse.T_start,$PRE.patient_low.periodicDose.absorptionLumen.rising,$PRE.patient_low.central.rising,patient_low.peripheral.rising,patient_low.periodicDose.pulse.count,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.rising,$whenCondition27,$whenCondition26,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition28,$PRE.ref.peripheral.rising,$PRE.ref.periodicDose.pulse.count,$PRE.ref.periodicDose.pulse.T_start,$PRE.ref.periodicDose.absorptionLumen.rising,$PRE.ref.central.rising,ref.peripheral.rising,ref.periodicDose.pulse.count,ref.periodicDose.pulse.T_start,ref.periodicDose.absorptionLumen.rising,ref.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$whenCondition15,$whenCondition21,$PRE.ref_high.peripheral.rising,$PRE.ref_high.periodicDose.pulse.count,$PRE.ref_high.periodicDose.pulse.T_start,$PRE.ref_high.periodicDose.absorptionLumen.rising,$PRE.ref_high.central.rising,ref_high.peripheral.rising,ref_high.periodicDose.pulse.count,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.rising,$whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition14,$PRE.ref_low.peripheral.rising,$PRE.ref_low.periodicDose.pulse.count,$PRE.ref_low.periodicDose.pulse.T_start,$PRE.ref_low.periodicDose.absorptionLumen.rising,$PRE.ref_low.central.rising,ref_low.peripheral.rising,ref_low.periodicDose.pulse.count,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (402): * Single equations (assignments): 378 * Array equations: 0 * Algorithm blocks: 24 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.0009117/0.05441, allocations: 1.279 MB / 0.7202 GB, free: 10.27 MB / 0.5574 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002927/0.0547, allocations: 342.7 kB / 0.7206 GB, free: 9.934 MB / 0.5574 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.000189/0.05489, allocations: 204.9 kB / 0.7208 GB, free: 9.73 MB / 0.5574 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.416e-05/0.0549, allocations: 11.95 kB / 0.7208 GB, free: 9.719 MB / 0.5574 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.679e-06/0.05491, allocations: 0 / 0.7208 GB, free: 9.719 MB / 0.5574 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0005599/0.05547, allocations: 438.4 kB / 0.7212 GB, free: 9.289 MB / 0.5574 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.000277/0.05575, allocations: 119.9 kB / 0.7213 GB, free: 9.172 MB / 0.5574 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0004934/0.05624, allocations: 99.94 kB / 0.7214 GB, free: 9.074 MB / 0.5574 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0003521/0.05659, allocations: 255.3 kB / 0.7216 GB, free: 8.824 MB / 0.5574 GB Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.003469/0.06006, allocations: 3.902 MB / 0.7255 GB, free: 4.695 MB / 0.5574 GB Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.003782/0.06384, allocations: 5.09 MB / 0.7304 GB, free: 15.2 MB / 0.573 GB Notification: Performance of postOpt setEvaluationStage (simulation): time 0.001093/0.06494, allocations: 1.209 MB / 0.7316 GB, free: 13.87 MB / 0.573 GB Notification: Performance of sorting global known variables: time 0.0006234/0.06556, allocations: 0.674 MB / 0.7323 GB, free: 13.2 MB / 0.573 GB Notification: Performance of Backend: time 2.71e-07/0.06556, allocations: 4 kB / 0.7323 GB, free: 13.19 MB / 0.573 GB Notification: Performance of simCode: created initialization part: time 0.002604/0.06816, allocations: 3.246 MB / 0.7354 GB, free: 9.496 MB / 0.573 GB Notification: Performance of SimCode: time 0.006262/0.07443, allocations: 6.819 MB / 0.7421 GB, free: 2.59 MB / 0.573 GB Notification: Performance of Templates: time 0.03769/0.1121, allocations: 38.29 MB / 0.7795 GB, free: 13.93 MB / 0.6199 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PK_2C_generic.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 5.321511827176437]