Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00139/0.00139, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001527/0.001527, allocations: 169 kB / 23.5 MB, free: 1.047 MB / 18.57 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9479/0.9479, allocations: 177.1 MB / 203.8 MB, free: 5.637 MB / 186.7 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180] "[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory. Missing names are: Paracetamol_Experiment Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.65/1.65, allocations: 273.5 MB / 0.5213 GB, free: 14.84 MB / 458.7 MB " [Timeout remaining time 178] Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") translateModel(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic,tolerance=1e-06,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic") [Timeout 660] "Notification: Performance of FrontEnd - loaded program: time 2.635e-06/2.635e-06, allocations: 0 / 0.647 GB, free: 38.76 MB / 0.5262 GB Notification: Performance of FrontEnd - Absyn->SCode: time 2.666e-05/2.93e-05, allocations: 3.812 kB / 0.647 GB, free: 38.75 MB / 0.5262 GB Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic): time 0.01354/0.01357, allocations: 15.38 MB / 0.662 GB, free: 28.75 MB / 0.5262 GB Notification: Performance of NFInst.instExpressions: time 0.007737/0.02131, allocations: 3.436 MB / 0.6654 GB, free: 26.36 MB / 0.5262 GB Notification: Performance of NFInst.updateImplicitVariability: time 0.002684/0.02399, allocations: 30.53 kB / 0.6654 GB, free: 26.35 MB / 0.5262 GB Notification: Performance of NFTyping.typeComponents: time 0.001719/0.02571, allocations: 0.5036 MB / 0.6659 GB, free: 26.08 MB / 0.5262 GB Notification: Performance of NFTyping.typeBindings: time 0.003772/0.02949, allocations: 1.086 MB / 0.6669 GB, free: 25.3 MB / 0.5262 GB Notification: Performance of NFTyping.typeClassSections: time 0.002409/0.03189, allocations: 0.9224 MB / 0.6678 GB, free: 24.7 MB / 0.5262 GB Notification: Performance of NFFlatten.flatten: time 0.005711/0.0376, allocations: 3.889 MB / 0.6716 GB, free: 22.51 MB / 0.5262 GB Notification: Performance of NFFlatten.resolveConnections: time 0.00125/0.03886, allocations: 0.5378 MB / 0.6722 GB, free: 22.2 MB / 0.5262 GB Notification: Performance of NFEvalConstants.evaluate: time 0.003774/0.04263, allocations: 1.954 MB / 0.6741 GB, free: 21.31 MB / 0.5262 GB Notification: Performance of NFSimplifyModel.simplify: time 0.00253/0.04516, allocations: 1.168 MB / 0.6752 GB, free: 20.88 MB / 0.5262 GB Notification: Performance of NFPackage.collectConstants: time 0.0008966/0.04606, allocations: 332.7 kB / 0.6755 GB, free: 20.88 MB / 0.5262 GB Notification: Performance of NFFlatten.collectFunctions: time 0.001562/0.04762, allocations: 478 kB / 0.676 GB, free: 20.83 MB / 0.5262 GB Notification: Performance of NFScalarize.scalarize: time 0.0006542/0.04827, allocations: 0.7081 MB / 0.6767 GB, free: 20.35 MB / 0.5262 GB Notification: Performance of NFVerifyModel.verify: time 0.002485/0.05076, allocations: 1.131 MB / 0.6778 GB, free: 19.82 MB / 0.5262 GB Notification: Performance of NFConvertDAE.convert: time 0.005211/0.05597, allocations: 2.668 MB / 0.6804 GB, free: 18.41 MB / 0.5262 GB Notification: Performance of FrontEnd - DAE generated: time 7.464e-06/0.05598, allocations: 0 / 0.6804 GB, free: 18.41 MB / 0.5262 GB Notification: Performance of FrontEnd: time 2.194e-06/0.05598, allocations: 3.938 kB / 0.6804 GB, free: 18.4 MB / 0.5262 GB Notification: Performance of Transformations before backend: time 0.0001523/0.05613, allocations: 1.094 kB / 0.6804 GB, free: 18.4 MB / 0.5262 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 486 * Number of variables: 486 Notification: Performance of Generate backend data structure: time 0.005272/0.0614, allocations: 4.37 MB / 0.6847 GB, free: 15.08 MB / 0.5262 GB Notification: Performance of prepare preOptimizeDAE: time 4.676e-05/0.06145, allocations: 8.25 kB / 0.6847 GB, free: 15.08 MB / 0.5262 GB Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001336/0.06278, allocations: 0.9149 MB / 0.6856 GB, free: 14.71 MB / 0.5262 GB Notification: Performance of preOpt evaluateParameters (simulation): time 0.001604/0.06439, allocations: 1.31 MB / 0.6868 GB, free: 13.81 MB / 0.5262 GB Notification: Performance of preOpt simplifyIfEquations (simulation): time 8.884e-05/0.06448, allocations: 146.6 kB / 0.687 GB, free: 13.75 MB / 0.5262 GB Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002573/0.06473, allocations: 224.4 kB / 0.6872 GB, free: 13.68 MB / 0.5262 GB Notification: Performance of preOpt clockPartitioning (simulation): time 0.002547/0.06728, allocations: 2.516 MB / 0.6897 GB, free: 12 MB / 0.5262 GB Notification: Performance of preOpt findStateOrder (simulation): time 7.131e-05/0.06735, allocations: 28.36 kB / 0.6897 GB, free: 11.98 MB / 0.5262 GB Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001221/0.06747, allocations: 77.91 kB / 0.6898 GB, free: 11.93 MB / 0.5262 GB Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.574e-05/0.06751, allocations: 43.53 kB / 0.6898 GB, free: 11.93 MB / 0.5262 GB Notification: Performance of preOpt removeEqualRHS (simulation): time 0.001619/0.06913, allocations: 1.913 MB / 0.6917 GB, free: 10.5 MB / 0.5262 GB Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.005282/0.07441, allocations: 6.152 MB / 0.6977 GB, free: 5.168 MB / 0.5262 GB Notification: Performance of preOpt comSubExp (simulation): time 0.001535/0.07595, allocations: 2.021 MB / 0.6996 GB, free: 2.906 MB / 0.5262 GB Notification: Performance of preOpt resolveLoops (simulation): time 0.0007958/0.07674, allocations: 1.426 MB / 0.701 GB, free: 1.281 MB / 0.5262 GB Notification: Performance of preOpt evalFunc (simulation): time 7.081e-05/0.07681, allocations: 55.67 kB / 0.7011 GB, free: 1.227 MB / 0.5262 GB Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0019/0.07871, allocations: 3.197 MB / 0.7042 GB, free: 13.57 MB / 0.5418 GB Notification: Performance of pre-optimization done (n=300): time 4.038e-06/0.07872, allocations: 4 kB / 0.7042 GB, free: 13.57 MB / 0.5418 GB Notification: Performance of matching and sorting (n=318): time 0.01035/0.08907, allocations: 12.63 MB / 0.7166 GB, free: 15.87 MB / 0.5574 GB Notification: Performance of inlineWhenForInitialization (initialization): time 0.0005219/0.08959, allocations: 1.976 MB / 0.7185 GB, free: 13.45 MB / 0.5574 GB Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.001599/0.09119, allocations: 1.842 MB / 0.7203 GB, free: 11.57 MB / 0.5574 GB Notification: Performance of collectPreVariables (initialization): time 0.0001482/0.09134, allocations: 117.7 kB / 0.7204 GB, free: 11.45 MB / 0.5574 GB Notification: Performance of collectInitialEqns (initialization): time 0.0006452/0.09199, allocations: 1.152 MB / 0.7215 GB, free: 10.29 MB / 0.5574 GB Notification: Performance of collectInitialBindings (initialization): time 0.0005667/0.09255, allocations: 1.019 MB / 0.7225 GB, free: 9.258 MB / 0.5574 GB Notification: Performance of simplifyInitialFunctions (initialization): time 0.000561/0.09311, allocations: 0.535 MB / 0.723 GB, free: 8.711 MB / 0.5574 GB Notification: Performance of setup shared object (initialization): time 9.436e-05/0.09321, allocations: 484.7 kB / 0.7235 GB, free: 8.234 MB / 0.5574 GB Notification: Performance of preBalanceInitialSystem (initialization): time 0.001236/0.09444, allocations: 1.688 MB / 0.7251 GB, free: 6.32 MB / 0.5574 GB Notification: Performance of partitionIndependentBlocks (initialization): time 0.001616/0.09606, allocations: 2.741 MB / 0.7278 GB, free: 2.895 MB / 0.5574 GB Notification: Performance of analyzeInitialSystem (initialization): time 0.003593/0.09965, allocations: 5.744 MB / 0.7334 GB, free: 12.12 MB / 0.573 GB Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.439e-05/0.09967, allocations: 4 kB / 0.7334 GB, free: 12.12 MB / 0.573 GB Notification: Performance of matching and sorting (n=462) (initialization): time 0.004213/0.1039, allocations: 5.133 MB / 0.7384 GB, free: 6.547 MB / 0.573 GB Notification: Performance of prepare postOptimizeDAE: time 0.0003452/0.1042, allocations: 1.016 MB / 0.7394 GB, free: 5.312 MB / 0.573 GB Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.394e-05/0.1043, allocations: 20 kB / 0.7395 GB, free: 5.293 MB / 0.573 GB Notification: Performance of postOpt tearingSystem (initialization): time 4.095e-05/0.1043, allocations: 43.94 kB / 0.7395 GB, free: 5.25 MB / 0.573 GB Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001278/0.1056, allocations: 0.6828 MB / 0.7402 GB, free: 4.566 MB / 0.573 GB Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 4.095e-05/0.1056, allocations: 51.86 kB / 0.7402 GB, free: 4.516 MB / 0.573 GB Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008657/0.1065, allocations: 143.9 kB / 0.7404 GB, free: 4.375 MB / 0.573 GB Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0003181/0.1068, allocations: 399.5 kB / 0.7407 GB, free: 3.984 MB / 0.573 GB Warning: Assuming fixed start value for the following 84 variables: patient_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real patient.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real patient.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_high.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_high.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref_low.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref_low.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true ) \"Total dose adminitrated by this source\" type: Real ref.peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true ) \"area under curve\" type: Real ref.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_low.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real patient_high.central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true ) type: Real ref.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean ref_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_low.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.peripheral.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true ) type: Boolean patient_high.central.rising:DISCRETE(fixed = true protected = true ) type: Boolean Notification: Model statistics after passing the back-end for initialization: * Number of independent subsystems: 96 * Number of states: 0 () * Number of discrete variables: 186 ($PRE.ref.peripheral.Cmin,ref.peripheral.Cmin,$PRE.ref.peripheral.Cmax,ref.peripheral.Cmax,$PRE.ref.periodicDose.absorptionLumen.Cmin,ref.periodicDose.absorptionLumen.Cmin,$PRE.ref.periodicDose.absorptionLumen.Cmax,ref.periodicDose.absorptionLumen.Cmax,$PRE.ref.central.Cmin,ref.central.Cmin,$PRE.ref.central.Cmax,ref.central.Cmax,$PRE.ref_low.peripheral.Cmin,ref_low.peripheral.Cmin,$PRE.ref_low.peripheral.Cmax,ref_low.peripheral.Cmax,$PRE.ref_low.periodicDose.absorptionLumen.Cmin,ref_low.periodicDose.absorptionLumen.Cmin,$PRE.ref_low.periodicDose.absorptionLumen.Cmax,ref_low.periodicDose.absorptionLumen.Cmax,$PRE.ref_low.central.Cmin,ref_low.central.Cmin,$PRE.ref_low.central.Cmax,ref_low.central.Cmax,$PRE.ref_high.peripheral.Cmin,ref_high.peripheral.Cmin,$PRE.ref_high.peripheral.Cmax,ref_high.peripheral.Cmax,$PRE.ref_high.periodicDose.absorptionLumen.Cmin,ref_high.periodicDose.absorptionLumen.Cmin,$PRE.ref_high.periodicDose.absorptionLumen.Cmax,ref_high.periodicDose.absorptionLumen.Cmax,$PRE.ref_high.central.Cmin,ref_high.central.Cmin,$PRE.ref_high.central.Cmax,ref_high.central.Cmax,$PRE.patient.peripheral.Cmin,patient.peripheral.Cmin,$PRE.patient.peripheral.Cmax,patient.peripheral.Cmax,$PRE.patient.periodicDose.absorptionLumen.Cmin,patient.periodicDose.absorptionLumen.Cmin,$PRE.patient.periodicDose.absorptionLumen.Cmax,patient.periodicDose.absorptionLumen.Cmax,$PRE.patient.central.Cmin,patient.central.Cmin,$PRE.patient.central.Cmax,patient.central.Cmax,$PRE.patient_low.peripheral.Cmin,patient_low.peripheral.Cmin,$PRE.patient_low.peripheral.Cmax,patient_low.peripheral.Cmax,$PRE.patient_low.periodicDose.absorptionLumen.Cmin,patient_low.periodicDose.absorptionLumen.Cmin,$PRE.patient_low.periodicDose.absorptionLumen.Cmax,patient_low.periodicDose.absorptionLumen.Cmax,$PRE.patient_low.central.Cmin,patient_low.central.Cmin,$PRE.patient_low.central.Cmax,patient_low.central.Cmax,$PRE.patient_high.peripheral.Cmin,patient_high.peripheral.Cmin,$PRE.patient_high.peripheral.Cmax,patient_high.peripheral.Cmax,$PRE.patient_high.periodicDose.absorptionLumen.Cmin,patient_high.periodicDose.absorptionLumen.Cmin,$PRE.patient_high.periodicDose.absorptionLumen.Cmax,patient_high.periodicDose.absorptionLumen.Cmax,$PRE.patient_high.central.Cmin,patient_high.central.Cmin,$PRE.patient_high.central.Cmax,patient_high.central.Cmax,$PRE.ref.peripheral.rising,$PRE.ref.periodicDose.pulse.count,$PRE.ref.periodicDose.pulse.T_start,$PRE.ref.periodicDose.absorptionLumen.rising,$PRE.ref.central.rising,ref.CYP2C19.status,ref.SLC22A2.status,ref.peripheral.rising,ref.periodicDose.pulse.count,ref.periodicDose.pulse.T_start,ref.periodicDose.absorptionLumen.rising,ref.central.rising,$whenCondition41,$whenCondition40,$whenCondition39,$whenCondition38,$whenCondition37,$whenCondition36,$whenCondition42,$PRE.ref_low.peripheral.rising,$PRE.ref_low.periodicDose.pulse.count,$PRE.ref_low.periodicDose.pulse.T_start,$PRE.ref_low.periodicDose.absorptionLumen.rising,$PRE.ref_low.central.rising,ref_low.CYP2C19.status,ref_low.SLC22A2.status,ref_low.peripheral.rising,ref_low.periodicDose.pulse.count,ref_low.periodicDose.pulse.T_start,ref_low.periodicDose.absorptionLumen.rising,ref_low.central.rising,$whenCondition34,$whenCondition33,$whenCondition32,$whenCondition31,$whenCondition30,$whenCondition29,$whenCondition35,$PRE.ref_high.peripheral.rising,$PRE.ref_high.periodicDose.pulse.count,$PRE.ref_high.periodicDose.pulse.T_start,$PRE.ref_high.periodicDose.absorptionLumen.rising,$PRE.ref_high.central.rising,ref_high.CYP2C19.status,ref_high.SLC22A2.status,ref_high.peripheral.rising,ref_high.periodicDose.pulse.count,ref_high.periodicDose.pulse.T_start,ref_high.periodicDose.absorptionLumen.rising,ref_high.central.rising,$whenCondition27,$whenCondition26,$whenCondition25,$whenCondition24,$whenCondition23,$whenCondition22,$whenCondition28,$PRE.patient.peripheral.rising,$PRE.patient.periodicDose.pulse.count,$PRE.patient.periodicDose.pulse.T_start,$PRE.patient.periodicDose.absorptionLumen.rising,$PRE.patient.central.rising,patient.CYP2C19.status,patient.SLC22A2.status,patient.peripheral.rising,patient.periodicDose.pulse.count,patient.periodicDose.pulse.T_start,patient.periodicDose.absorptionLumen.rising,patient.central.rising,$whenCondition20,$whenCondition19,$whenCondition18,$whenCondition17,$whenCondition16,$whenCondition15,$whenCondition21,$PRE.patient_low.peripheral.rising,$PRE.patient_low.periodicDose.pulse.count,$PRE.patient_low.periodicDose.pulse.T_start,$PRE.patient_low.periodicDose.absorptionLumen.rising,$PRE.patient_low.central.rising,patient_low.CYP2C19.status,patient_low.SLC22A2.status,patient_low.peripheral.rising,patient_low.periodicDose.pulse.count,patient_low.periodicDose.pulse.T_start,patient_low.periodicDose.absorptionLumen.rising,patient_low.central.rising,$whenCondition13,$whenCondition12,$whenCondition11,$whenCondition10,$whenCondition9,$whenCondition8,$whenCondition14,$PRE.patient_high.peripheral.rising,$PRE.patient_high.periodicDose.pulse.count,$PRE.patient_high.periodicDose.pulse.T_start,$PRE.patient_high.periodicDose.absorptionLumen.rising,$PRE.patient_high.central.rising,patient_high.CYP2C19.status,patient_high.SLC22A2.status,patient_high.peripheral.rising,patient_high.periodicDose.pulse.count,patient_high.periodicDose.pulse.T_start,patient_high.periodicDose.absorptionLumen.rising,patient_high.central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7) * Number of discrete states: 0 () * Number of clocked states: 0 () * Top-level inputs: 0 Notification: Strong component statistics for initialization (426): * Single equations (assignments): 390 * Array equations: 0 * Algorithm blocks: 36 * Record equations: 0 * When equations: 0 * If-equations: 0 * Equation systems (not torn): 0 * Torn equation systems: 0 * Mixed (continuous/discrete) equation systems: 0 Notification: Performance of prepare postOptimizeDAE: time 0.00132/0.1081, allocations: 1.652 MB / 0.7423 GB, free: 2.188 MB / 0.573 GB Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0007193/0.1088, allocations: 0.7596 MB / 0.7431 GB, free: 1.426 MB / 0.573 GB Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002436/0.1091, allocations: 259.5 kB / 0.7433 GB, free: 1.164 MB / 0.573 GB Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.708e-05/0.1091, allocations: 15.89 kB / 0.7434 GB, free: 1.148 MB / 0.573 GB Notification: Performance of postOpt simplifyComplexFunction (simulation): time 5.159e-06/0.1091, allocations: 4 kB / 0.7434 GB, free: 1.145 MB / 0.573 GB Notification: Performance of postOpt removeConstants (simulation): time 0.0007709/0.1099, allocations: 0.5993 MB / 0.7439 GB, free: 0.543 MB / 0.573 GB Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0003519/0.1102, allocations: 131.9 kB / 0.7441 GB, free: 428 kB / 0.573 GB Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005903/0.1108, allocations: 115.9 kB / 0.7442 GB, free: 312 kB / 0.573 GB Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000383/0.1112, allocations: 271.3 kB / 0.7444 GB, free: 40 kB / 0.573 GB Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.004283/0.1155, allocations: 5.075 MB / 0.7494 GB, free: 10.59 MB / 0.5887 GB Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.005513/0.121, allocations: 7.307 MB / 0.7565 GB, free: 2.668 MB / 0.5887 GB Notification: Performance of postOpt setEvaluationStage (simulation): time 0.001288/0.1223, allocations: 1.769 MB / 0.7583 GB, free: 0.7109 MB / 0.5887 GB Notification: Performance of sorting global known variables: time 0.001079/0.1234, allocations: 1.042 MB / 0.7593 GB, free: 15.65 MB / 0.6043 GB Notification: Performance of Backend: time 4.01e-07/0.1234, allocations: 3.938 kB / 0.7593 GB, free: 15.65 MB / 0.6043 GB Notification: Performance of simCode: created initialization part: time 0.003844/0.1272, allocations: 4.547 MB / 0.7637 GB, free: 10.45 MB / 0.6043 GB Notification: Performance of SimCode: time 0.008944/0.1361, allocations: 8.495 MB / 0.772 GB, free: 1.66 MB / 0.6043 GB Notification: Performance of Templates: time 0.05421/0.1904, allocations: 47.43 MB / 0.8183 GB, free: 3.992 MB / 0.6512 GB " [Timeout remaining time 660] make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.makefile [Timeout 660] (rm -f Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic -abortSlowSimulation -alarm=240 -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.Pharmacogenomics.PKPG_2C_generic.pipe 2>&1) [Timeout 240] [Calling sys.exit(0), Time elapsed: 6.0767970168963075]