Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001418/0.001418, allocations: 91.55 kB / 20.2 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001583/0.001583, allocations: 169 kB / 23.5 MB, free: 1.051 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9143/0.9143, allocations: 177.1 MB / 203.8 MB, free: 5.645 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.596/1.596, allocations: 273.5 MB / 0.5213 GB, free: 14.84 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PK_1C_Digoxin,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin")
translateModel(Pharmacolibrary.Examples.PK_1C_Digoxin,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.392e-06/1.392e-06, allocations: 0 / 0.647 GB, free: 38.84 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.83e-05/1.969e-05, allocations: 2.312 kB / 0.647 GB, free: 38.83 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PK_1C_Digoxin): time 0.002263/0.002283, allocations: 2.072 MB / 0.649 GB, free: 37.48 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0006967/0.002979, allocations: 0.5486 MB / 0.6495 GB, free: 37.12 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 6.867e-05/0.003048, allocations: 0 / 0.6495 GB, free: 37.12 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001067/0.003155, allocations: 21.97 kB / 0.6496 GB, free: 37.11 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0001259/0.003281, allocations: 47.88 kB / 0.6496 GB, free: 37.09 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001686/0.003449, allocations: 51.3 kB / 0.6496 GB, free: 37.07 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0002137/0.003663, allocations: 186.9 kB / 0.6498 GB, free: 37.02 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001182/0.003781, allocations: 38.2 kB / 0.6499 GB, free: 36.99 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001132/0.003894, allocations: 98.56 kB / 0.65 GB, free: 36.95 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001029/0.003997, allocations: 56.14 kB / 0.65 GB, free: 36.93 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.733e-05/0.004025, allocations: 16.09 kB / 0.65 GB, free: 36.93 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.097e-05/0.004046, allocations: 15.38 kB / 0.65 GB, free: 36.93 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.19e-05/0.004077, allocations: 32.42 kB / 0.6501 GB, free: 36.91 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 6.431e-05/0.004142, allocations: 60.92 kB / 0.6501 GB, free: 36.88 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001769/0.004319, allocations: 127.1 kB / 0.6503 GB, free: 36.81 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.144e-06/0.004321, allocations: 0 / 0.6503 GB, free: 36.81 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 9.61e-07/0.004322, allocations: 4.688 kB / 0.6503 GB, free: 36.81 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.498e-06/0.004326, allocations: 0 / 0.6503 GB, free: 36.81 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 26
 * Number of variables: 26
Notification: Performance of Generate backend data structure: time 0.0005411/0.004867, allocations: 0.5112 MB / 0.6508 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.298e-05/0.00491, allocations: 9.312 kB / 0.6508 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.173e-05/0.004972, allocations: 27.53 kB / 0.6508 GB, free: 36.32 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002054/0.005177, allocations: 177.6 kB / 0.651 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.511e-05/0.005193, allocations: 13.58 kB / 0.651 GB, free: 36.15 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.437e-05/0.005227, allocations: 13.5 kB / 0.651 GB, free: 36.14 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001865/0.005413, allocations: 138.6 kB / 0.6511 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.491e-05/0.005428, allocations: 7.891 kB / 0.6511 GB, free: 36.05 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.725e-05/0.005446, allocations: 11.08 kB / 0.6511 GB, free: 36.04 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 9.929e-06/0.005456, allocations: 2.031 kB / 0.6511 GB, free: 36.04 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000104/0.005559, allocations: 79.02 kB / 0.6512 GB, free: 36.01 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0004328/0.005992, allocations: 401.8 kB / 0.6516 GB, free: 35.68 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001512/0.006143, allocations: 124.8 kB / 0.6517 GB, free: 35.59 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 6.366e-05/0.006207, allocations: 61 kB / 0.6518 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 9.708e-06/0.006217, allocations: 1.875 kB / 0.6518 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001676/0.006384, allocations: 197.9 kB / 0.652 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=20): time 1.964e-06/0.006386, allocations: 1.438 kB / 0.652 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=21): time 0.0007245/0.007111, allocations: 0.5794 MB / 0.6525 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 3.052e-05/0.007141, allocations: 137.3 kB / 0.6527 GB, free: 34.8 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001018/0.007243, allocations: 200.3 kB / 0.6529 GB, free: 34.62 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.624e-05/0.007259, allocations: 35.22 kB / 0.6529 GB, free: 34.59 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 5.12e-05/0.007311, allocations: 156.5 kB / 0.653 GB, free: 34.44 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 3.567e-05/0.007346, allocations: 73.77 kB / 0.6531 GB, free: 34.38 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 5.334e-05/0.0074, allocations: 54.06 kB / 0.6532 GB, free: 34.34 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.565e-05/0.007455, allocations: 0.4936 MB / 0.6536 GB, free: 33.85 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 7.455e-05/0.00753, allocations: 106.8 kB / 0.6537 GB, free: 33.76 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 9.557e-05/0.007625, allocations: 190.8 kB / 0.6539 GB, free: 33.57 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002078/0.007833, allocations: 322.3 kB / 0.6542 GB, free: 33.28 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.282e-06/0.007834, allocations: 0 / 0.6542 GB, free: 33.28 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=32) (initialization): time 0.0002475/0.008082, allocations: 316 kB / 0.6545 GB, free: 33.07 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 2.806e-05/0.00811, allocations: 60.19 kB / 0.6546 GB, free: 33 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.32e-06/0.008115, allocations: 2.375 kB / 0.6546 GB, free: 33 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.006e-05/0.008135, allocations: 1.531 kB / 0.6546 GB, free: 33 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001471/0.008282, allocations: 54.48 kB / 0.6546 GB, free: 33 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.122e-05/0.008294, allocations: 4.75 kB / 0.6546 GB, free: 33 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 7.407e-05/0.008368, allocations: 20.33 kB / 0.6547 GB, free: 32.99 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.233e-05/0.00838, allocations: 10.69 kB / 0.6547 GB, free: 32.99 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 6 variables:
         singleDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         singleDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 7
 * Number of states: 0 ()
 * Number of discrete variables: 13 ($PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.central.rising,$PRE.singleDose.pulse.count,$PRE.singleDose.pulse.T_start,central.rising,singleDose.pulse.count,singleDose.pulse.T_start,$whenCondition3,$whenCondition2,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (30):
 * Single equations (assignments): 28
 * Array equations: 0
 * Algorithm blocks: 2
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001418/0.008522, allocations: 229.6 kB / 0.6549 GB, free: 32.78 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.512e-05/0.008547, allocations: 34.75 kB / 0.6549 GB, free: 32.76 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.822e-05/0.008575, allocations: 20.33 kB / 0.655 GB, free: 32.75 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.559e-06/0.00858, allocations: 3.469 kB / 0.655 GB, free: 32.75 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.193e-06/0.008581, allocations: 0 / 0.655 GB, free: 32.75 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.608e-05/0.008597, allocations: 20.88 kB / 0.655 GB, free: 32.73 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.438e-05/0.008621, allocations: 11.56 kB / 0.655 GB, free: 32.73 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 4.84e-05/0.00867, allocations: 7.078 kB / 0.655 GB, free: 32.73 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 5.533e-05/0.008725, allocations: 14.23 kB / 0.655 GB, free: 32.72 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0002909/0.009016, allocations: 368.1 kB / 0.6554 GB, free: 32.47 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0003313/0.009347, allocations: 0.565 MB / 0.6559 GB, free: 32.02 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001006/0.009448, allocations: 86.41 kB / 0.656 GB, free: 31.97 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 5.713e-05/0.009505, allocations: 146.5 kB / 0.6561 GB, free: 31.85 MB / 0.5262 GB
Notification: Performance of Backend: time 2.3e-07/0.009505, allocations: 0 / 0.6561 GB, free: 31.85 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0004022/0.009908, allocations: 342.8 kB / 0.6565 GB, free: 31.55 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.001271/0.01118, allocations: 1.256 MB / 0.6577 GB, free: 30.45 MB / 0.5262 GB
Notification: Performance of Templates: time 0.00453/0.01571, allocations: 2.58 MB / 0.6602 GB, free: 30.26 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PK_1C_Digoxin.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.7527850260958076]