Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001366/0.001366, allocations: 91.55 kB / 20.19 MB, free: 4.199 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001556/0.001556, allocations: 169 kB / 23.5 MB, free: 0.8945 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9507/0.9507, allocations: 177.1 MB / 203.8 MB, free: 5.602 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.692/1.692, allocations: 273.5 MB / 0.5213 GB, free: 14.88 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation")
translateModel(Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation,tolerance=1e-06,outputFormat="empty",numberOfIntervals=499,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.352e-06/1.352e-06, allocations: 0 / 0.647 GB, free: 38.64 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.983e-05/2.118e-05, allocations: 5.406 kB / 0.647 GB, free: 38.63 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation): time 0.001787/0.001808, allocations: 1.537 MB / 0.6485 GB, free: 37.63 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0004441/0.002252, allocations: 329.5 kB / 0.6488 GB, free: 37.44 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 4.012e-05/0.002292, allocations: 3.328 kB / 0.6488 GB, free: 37.44 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0002356/0.002528, allocations: 46.34 kB / 0.6488 GB, free: 37.43 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 6.191e-05/0.00259, allocations: 24.41 kB / 0.6489 GB, free: 37.41 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0002362/0.002826, allocations: 102.4 kB / 0.649 GB, free: 37.37 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 8.337e-05/0.002909, allocations: 50.36 kB / 0.649 GB, free: 37.36 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.659e-05/0.002946, allocations: 15.19 kB / 0.649 GB, free: 37.35 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 5.327e-05/0.002999, allocations: 23.33 kB / 0.649 GB, free: 37.35 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001003/0.003099, allocations: 16.28 kB / 0.6491 GB, free: 37.35 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 1.513e-05/0.003114, allocations: 2.844 kB / 0.6491 GB, free: 37.35 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001724/0.003287, allocations: 142.8 kB / 0.6492 GB, free: 37.3 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 5.154e-05/0.003338, allocations: 19.3 kB / 0.6492 GB, free: 37.3 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 3.448e-05/0.003373, allocations: 17.66 kB / 0.6492 GB, free: 37.3 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002055/0.003578, allocations: 174.3 kB / 0.6494 GB, free: 37.24 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.555e-06/0.003581, allocations: 1.031 kB / 0.6494 GB, free: 37.24 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.172e-06/0.003582, allocations: 1.688 kB / 0.6494 GB, free: 37.24 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.408e-06/0.003587, allocations: 0 / 0.6494 GB, free: 37.24 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 7
 * Number of variables: 7
Notification: Performance of Generate backend data structure: time 0.0003236/0.00391, allocations: 414.8 kB / 0.6498 GB, free: 36.83 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.781e-05/0.003948, allocations: 9.672 kB / 0.6498 GB, free: 36.83 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001391/0.004087, allocations: 27.64 kB / 0.6498 GB, free: 36.82 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 7.503e-05/0.004162, allocations: 126.4 kB / 0.65 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.244e-05/0.004175, allocations: 2.125 kB / 0.65 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.71e-05/0.004192, allocations: 3.156 kB / 0.65 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0001161/0.004308, allocations: 86.75 kB / 0.65 GB, free: 36.61 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 7.403e-06/0.004315, allocations: 5.375 kB / 0.65 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.256e-06/0.004323, allocations: 384 / 0.6501 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.574e-06/0.004331, allocations: 1.875 kB / 0.6501 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 4.193e-05/0.004373, allocations: 29.22 kB / 0.6501 GB, free: 36.59 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0003499/0.004723, allocations: 454.9 kB / 0.6505 GB, free: 36.17 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001393/0.004862, allocations: 67.8 kB / 0.6506 GB, free: 36.12 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 2.867e-05/0.004891, allocations: 28.28 kB / 0.6506 GB, free: 36.11 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 7.855e-06/0.004899, allocations: 3.062 kB / 0.6506 GB, free: 36.11 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.479e-05/0.004913, allocations: 36.7 kB / 0.6506 GB, free: 36.06 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=5): time 1.302e-06/0.004915, allocations: 0 / 0.6506 GB, free: 36.06 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=5): time 0.0001985/0.005113, allocations: 116 kB / 0.6508 GB, free: 36 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.22e-05/0.005125, allocations: 51.41 kB / 0.6508 GB, free: 35.94 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 9.642e-05/0.005222, allocations: 226.9 kB / 0.651 GB, free: 35.75 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 7.524e-06/0.005229, allocations: 27.33 kB / 0.651 GB, free: 35.72 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 3.696e-05/0.005266, allocations: 144.8 kB / 0.6512 GB, free: 35.58 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 1.674e-05/0.005283, allocations: 22.25 kB / 0.6512 GB, free: 35.56 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 2.928e-05/0.005312, allocations: 25.53 kB / 0.6512 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.969e-05/0.005362, allocations: 0.4922 MB / 0.6517 GB, free: 35.04 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 2.51e-05/0.005387, allocations: 20.23 kB / 0.6517 GB, free: 35.04 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 2.868e-05/0.005416, allocations: 39.72 kB / 0.6518 GB, free: 35 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 8.492e-05/0.005501, allocations: 80.61 kB / 0.6518 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.054e-06/0.005503, allocations: 1.469 kB / 0.6518 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=7) (initialization): time 0.0001075/0.00561, allocations: 102.8 kB / 0.6519 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.28e-05/0.005623, allocations: 4.719 kB / 0.6519 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.342e-06/0.005629, allocations: 7.031 kB / 0.652 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.521e-05/0.005645, allocations: 1.25 kB / 0.652 GB, free: 34.9 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 4.813e-05/0.005693, allocations: 11.62 kB / 0.652 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 9.598e-06/0.005702, allocations: 1.594 kB / 0.652 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.831e-05/0.005721, allocations: 3.219 kB / 0.652 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 4.943e-05/0.00577, allocations: 21.97 kB / 0.652 GB, free: 34.89 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 1 variables:
         M:VARIABLE(min = -1e-12 start = 4e-4 unit = \"kg\" fixed = true )  type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 1 (clMod.dbgStatus)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (7):
 * Single equations (assignments): 7
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.174e-05/0.005862, allocations: 161.7 kB / 0.6521 GB, free: 34.73 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.946e-05/0.005901, allocations: 25.16 kB / 0.6522 GB, free: 34.72 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.38e-05/0.005925, allocations: 13.81 kB / 0.6522 GB, free: 34.71 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 3.807e-06/0.005929, allocations: 4.734 kB / 0.6522 GB, free: 34.71 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.012e-06/0.00593, allocations: 0 / 0.6522 GB, free: 34.71 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 8.416e-06/0.005938, allocations: 7.422 kB / 0.6522 GB, free: 34.71 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.159e-05/0.00595, allocations: 3.516 kB / 0.6522 GB, free: 34.71 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 3.144e-05/0.005981, allocations: 5.312 kB / 0.6522 GB, free: 34.71 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.715e-05/0.005998, allocations: 3.312 kB / 0.6522 GB, free: 34.71 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0001401/0.006139, allocations: 201.4 kB / 0.6524 GB, free: 34.54 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0001646/0.006303, allocations: 384.8 kB / 0.6528 GB, free: 34.21 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 3.272e-05/0.006336, allocations: 34.45 kB / 0.6528 GB, free: 34.19 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 4.71e-05/0.006383, allocations: 165.3 kB / 0.653 GB, free: 34.06 MB / 0.5262 GB
Notification: Performance of Backend: time 3.31e-07/0.006383, allocations: 5.312 kB / 0.653 GB, free: 34.05 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0003949/0.006778, allocations: 171.9 kB / 0.6531 GB, free: 33.95 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.0007519/0.00753, allocations: 0.9063 MB / 0.654 GB, free: 33.09 MB / 0.5262 GB
Notification: Performance of Templates: time 0.003131/0.01066, allocations: 1.595 MB / 0.6556 GB, free: 32.91 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation.sim & ./Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Examples.PKPG_1C_GentamicineEquation.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.683279857970774]