Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.00101/0.00101, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001538/0.001538, allocations: 169 kB / 23.5 MB, free: 1.047 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9362/0.9362, allocations: 177.1 MB / 203.8 MB, free: 5.648 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.616/1.616, allocations: 273.5 MB / 0.5213 GB, free: 14.85 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C,tolerance=1e-12,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C")
translateModel(Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C,tolerance=1e-12,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.442e-06/1.442e-06, allocations: 0 / 0.6471 GB, free: 38.62 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.423e-05/1.567e-05, allocations: 6.312 kB / 0.6471 GB, free: 38.62 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C): time 0.006196/0.006212, allocations: 3.486 MB / 0.6505 GB, free: 36.37 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0009555/0.007167, allocations: 0.8072 MB / 0.6513 GB, free: 35.84 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001174/0.007285, allocations: 4.453 kB / 0.6513 GB, free: 35.84 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001337/0.007419, allocations: 48.48 kB / 0.6514 GB, free: 35.81 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0002285/0.007647, allocations: 148.4 kB / 0.6515 GB, free: 35.73 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.003291/0.01094, allocations: 112.4 kB / 0.6516 GB, free: 35.67 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003489/0.01129, allocations: 490.9 kB / 0.6521 GB, free: 35.41 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001523/0.01144, allocations: 78.19 kB / 0.6522 GB, free: 35.37 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002156/0.01165, allocations: 252.6 kB / 0.6524 GB, free: 35.27 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002356/0.01189, allocations: 155.3 kB / 0.6525 GB, free: 35.22 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 4.575e-05/0.01194, allocations: 32.88 kB / 0.6526 GB, free: 35.22 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 4.781e-05/0.01198, allocations: 34.78 kB / 0.6526 GB, free: 35.22 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.366e-05/0.01203, allocations: 73.5 kB / 0.6527 GB, free: 35.17 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001279/0.01216, allocations: 147.8 kB / 0.6528 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.000269/0.01242, allocations: 289.2 kB / 0.6531 GB, free: 34.97 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.735e-06/0.01243, allocations: 1.969 kB / 0.6531 GB, free: 34.97 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 9.62e-07/0.01243, allocations: 1.25 kB / 0.6531 GB, free: 34.97 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.829e-06/0.01243, allocations: 0 / 0.6531 GB, free: 34.97 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 67
 * Number of variables: 67
Notification: Performance of Generate backend data structure: time 0.0007594/0.01319, allocations: 0.7885 MB / 0.6539 GB, free: 34.3 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.754e-05/0.01323, allocations: 10.25 kB / 0.6539 GB, free: 34.3 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 9.264e-05/0.01332, allocations: 61.64 kB / 0.6539 GB, free: 34.27 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002307/0.01355, allocations: 233.4 kB / 0.6542 GB, free: 34.07 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.016e-05/0.01357, allocations: 22.22 kB / 0.6542 GB, free: 34.06 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 4.868e-05/0.01362, allocations: 33.75 kB / 0.6542 GB, free: 34.05 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003955/0.01402, allocations: 343.7 kB / 0.6545 GB, free: 33.83 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.816e-05/0.01404, allocations: 9.234 kB / 0.6545 GB, free: 33.82 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.344e-05/0.01406, allocations: 7.469 kB / 0.6546 GB, free: 33.82 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.006e-05/0.01407, allocations: 8.094 kB / 0.6546 GB, free: 33.82 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002477/0.01432, allocations: 235.2 kB / 0.6548 GB, free: 33.7 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0009822/0.0153, allocations: 0.8733 MB / 0.6556 GB, free: 33.07 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.000329/0.01563, allocations: 254.3 kB / 0.6559 GB, free: 32.9 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001353/0.01576, allocations: 165.5 kB / 0.656 GB, free: 32.78 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.318e-05/0.01579, allocations: 5.344 kB / 0.656 GB, free: 32.78 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003516/0.01614, allocations: 451.3 kB / 0.6565 GB, free: 32.41 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=46): time 2.374e-06/0.01614, allocations: 5.219 kB / 0.6565 GB, free: 32.41 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=49): time 0.00462/0.02076, allocations: 1.306 MB / 0.6578 GB, free: 31.52 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.136e-05/0.02081, allocations: 304.6 kB / 0.658 GB, free: 31.17 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001858/0.021, allocations: 308.1 kB / 0.6583 GB, free: 30.96 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 2.589e-05/0.02102, allocations: 46.42 kB / 0.6584 GB, free: 30.92 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 7.603e-05/0.0211, allocations: 221.5 kB / 0.6586 GB, free: 30.73 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 8.063e-05/0.02118, allocations: 160.4 kB / 0.6588 GB, free: 30.6 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001062/0.02129, allocations: 96.75 kB / 0.6588 GB, free: 30.54 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 6.384e-05/0.02135, allocations: 0.5231 MB / 0.6594 GB, free: 30.03 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001711/0.02152, allocations: 208.2 kB / 0.6596 GB, free: 29.87 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002094/0.02173, allocations: 381 kB / 0.6599 GB, free: 29.49 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0004962/0.02223, allocations: 0.7048 MB / 0.6606 GB, free: 28.86 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.066e-06/0.02223, allocations: 1.438 kB / 0.6606 GB, free: 28.86 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=73) (initialization): time 0.0006083/0.02284, allocations: 0.6357 MB / 0.6612 GB, free: 28.45 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 3.964e-05/0.02288, allocations: 119.5 kB / 0.6613 GB, free: 28.32 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.253e-06/0.02289, allocations: 4.219 kB / 0.6613 GB, free: 28.32 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.779e-05/0.0229, allocations: 7 kB / 0.6614 GB, free: 28.32 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0003144/0.02322, allocations: 114.5 kB / 0.6615 GB, free: 28.31 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.54e-05/0.02323, allocations: 18.14 kB / 0.6615 GB, free: 28.3 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001759/0.02341, allocations: 26.62 kB / 0.6615 GB, free: 28.29 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.08e-05/0.02344, allocations: 25.84 kB / 0.6615 GB, free: 28.29 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 14 variables:
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 16
 * Number of states: 0 ()
 * Number of discrete variables: 29 ($PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.Cmin,$PRE.periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.peripheral.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.periodicDose.absorptionLumen.rising,$PRE.central.rising,peripheral.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,periodicDose.absorptionLumen.rising,central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (69):
 * Single equations (assignments): 65
 * Array equations: 0
 * Algorithm blocks: 4
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002189/0.02366, allocations: 331.8 kB / 0.6618 GB, free: 27.99 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 6.244e-05/0.02372, allocations: 53.59 kB / 0.6619 GB, free: 27.97 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.128e-05/0.02377, allocations: 43.41 kB / 0.6619 GB, free: 27.94 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.55e-06/0.02378, allocations: 3.375 kB / 0.6619 GB, free: 27.94 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.743e-06/0.02378, allocations: 0 / 0.6619 GB, free: 27.94 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001065/0.02389, allocations: 69.94 kB / 0.662 GB, free: 27.9 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 5.307e-05/0.02394, allocations: 16.44 kB / 0.662 GB, free: 27.89 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001135/0.02405, allocations: 21.23 kB / 0.662 GB, free: 27.89 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 7.603e-05/0.02413, allocations: 40.55 kB / 0.6621 GB, free: 27.88 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0005643/0.02469, allocations: 0.6666 MB / 0.6627 GB, free: 27.45 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0006174/0.02531, allocations: 0.9889 MB / 0.6637 GB, free: 26.75 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001631/0.02547, allocations: 209.5 kB / 0.6639 GB, free: 26.62 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 9.844e-05/0.02557, allocations: 213.1 kB / 0.6641 GB, free: 26.47 MB / 0.5262 GB
Notification: Performance of Backend: time 3.61e-07/0.02557, allocations: 3.031 kB / 0.6641 GB, free: 26.47 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0005147/0.02609, allocations: 0.6167 MB / 0.6647 GB, free: 25.96 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.001779/0.02787, allocations: 1.836 MB / 0.6665 GB, free: 24.45 MB / 0.5262 GB
Notification: Performance of Templates: time 0.007584/0.03545, allocations: 5.841 MB / 0.6722 GB, free: 24 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.MHAA459A.MHAA459A_2C.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 10.612978277960792]