Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009091/0.0009091, allocations: 91.55 kB / 20.19 MB, free: 4.352 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001025/0.001025, allocations: 169 kB / 23.5 MB, free: 1.047 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9611/0.9611, allocations: 177.1 MB / 203.8 MB, free: 5.637 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.609/1.609, allocations: 273.5 MB / 0.5213 GB, free: 14.84 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C,tolerance=1e-09,outputFormat="empty",numberOfIntervals=12096,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C")
translateModel(Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C,tolerance=1e-09,outputFormat="empty",numberOfIntervals=12096,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.674e-06/1.674e-06, allocations: 0 / 0.6471 GB, free: 38.64 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.715e-05/1.883e-05, allocations: 2.312 kB / 0.6471 GB, free: 38.63 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C): time 0.002921/0.00294, allocations: 3.298 MB / 0.6503 GB, free: 36.52 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001461/0.004401, allocations: 1.316 MB / 0.6516 GB, free: 35.68 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001193/0.00452, allocations: 5.531 kB / 0.6516 GB, free: 35.68 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0003334/0.004853, allocations: 129.3 kB / 0.6517 GB, free: 35.64 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0004292/0.005283, allocations: 237.8 kB / 0.6519 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0003093/0.005592, allocations: 164.1 kB / 0.6521 GB, free: 35.44 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0004343/0.006026, allocations: 0.4899 MB / 0.6526 GB, free: 35.19 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001859/0.006212, allocations: 55.81 kB / 0.6526 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002545/0.006467, allocations: 261.8 kB / 0.6529 GB, free: 35.05 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0003385/0.006805, allocations: 173.5 kB / 0.653 GB, free: 35 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 4.57e-05/0.006851, allocations: 31.25 kB / 0.6531 GB, free: 35 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.0001205/0.006971, allocations: 70.45 kB / 0.6531 GB, free: 34.99 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 8.722e-05/0.007059, allocations: 78.06 kB / 0.6532 GB, free: 34.94 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001488/0.007207, allocations: 132.9 kB / 0.6533 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0004284/0.007636, allocations: 328.2 kB / 0.6537 GB, free: 34.74 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.687e-06/0.00764, allocations: 0 / 0.6537 GB, free: 34.74 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.022e-06/0.007641, allocations: 0 / 0.6537 GB, free: 34.74 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 7.073e-06/0.007648, allocations: 1.312 kB / 0.6537 GB, free: 34.74 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 52
 * Number of variables: 52
Notification: Performance of Generate backend data structure: time 0.0008472/0.008495, allocations: 0.7904 MB / 0.6544 GB, free: 34.07 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.952e-05/0.008534, allocations: 9.156 kB / 0.6544 GB, free: 34.07 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 9.812e-05/0.008633, allocations: 68.66 kB / 0.6545 GB, free: 34.03 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0003089/0.008941, allocations: 267.5 kB / 0.6548 GB, free: 33.82 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.554e-05/0.008977, allocations: 18.5 kB / 0.6548 GB, free: 33.8 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 5.303e-05/0.00903, allocations: 25.97 kB / 0.6548 GB, free: 33.8 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003553/0.009385, allocations: 287.7 kB / 0.6551 GB, free: 33.61 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.696e-05/0.009402, allocations: 6.016 kB / 0.6551 GB, free: 33.61 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.011e-05/0.009422, allocations: 10.91 kB / 0.6551 GB, free: 33.6 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.069e-05/0.009433, allocations: 5.812 kB / 0.6551 GB, free: 33.6 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002007/0.009634, allocations: 165.2 kB / 0.6553 GB, free: 33.52 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0007495/0.01038, allocations: 0.8476 MB / 0.6561 GB, free: 32.84 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004158/0.0108, allocations: 244.9 kB / 0.6563 GB, free: 32.68 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001528/0.01095, allocations: 129.2 kB / 0.6564 GB, free: 32.58 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 3.096e-05/0.01098, allocations: 7.109 kB / 0.6564 GB, free: 32.58 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003442/0.01133, allocations: 390.5 kB / 0.6568 GB, free: 32.27 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=39): time 1.663e-06/0.01133, allocations: 0 / 0.6568 GB, free: 32.27 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=41): time 0.001592/0.01292, allocations: 1.063 MB / 0.6579 GB, free: 31.56 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 7.01e-05/0.01299, allocations: 251.2 kB / 0.6581 GB, free: 31.27 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0003464/0.01334, allocations: 387.5 kB / 0.6585 GB, free: 31.04 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 3.26e-05/0.01337, allocations: 39.27 kB / 0.6585 GB, free: 31 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 0.0001306/0.0135, allocations: 234.6 kB / 0.6587 GB, free: 30.79 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 9.893e-05/0.0136, allocations: 136.4 kB / 0.6589 GB, free: 30.69 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001206/0.01372, allocations: 86.91 kB / 0.6589 GB, free: 30.64 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 0.0001126/0.01383, allocations: 0.5286 MB / 0.6595 GB, free: 30.12 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001806/0.01401, allocations: 168.3 kB / 0.6596 GB, free: 30 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002261/0.01424, allocations: 320.9 kB / 0.6599 GB, free: 29.68 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0004978/0.01474, allocations: 0.5667 MB / 0.6605 GB, free: 29.16 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 3.306e-06/0.01474, allocations: 1.375 kB / 0.6605 GB, free: 29.16 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=61) (initialization): time 0.0006463/0.01539, allocations: 0.535 MB / 0.661 GB, free: 28.83 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 4.953e-05/0.01544, allocations: 90.59 kB / 0.6611 GB, free: 28.74 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.2e-05/0.01545, allocations: 2.781 kB / 0.6611 GB, free: 28.74 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.36e-05/0.01547, allocations: 5.656 kB / 0.6611 GB, free: 28.74 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0003209/0.01579, allocations: 101.9 kB / 0.6612 GB, free: 28.73 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.814e-05/0.01581, allocations: 5.594 kB / 0.6612 GB, free: 28.73 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000196/0.01601, allocations: 24.78 kB / 0.6612 GB, free: 28.72 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.213e-05/0.01604, allocations: 20.16 kB / 0.6612 GB, free: 28.71 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 10 variables:
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 14
 * Number of states: 0 ()
 * Number of discrete variables: 26 ($PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.Cmin,$PRE.periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmax,$PRE.data.nextTimeEvent,$whenCondition1,data.nextTimeEventScaled,$PRE.data.nextTimeEventScaled,data.nextTimeEvent,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.periodicDose.absorptionLumen.rising,$PRE.central.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,periodicDose.absorptionLumen.rising,central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (58):
 * Single equations (assignments): 55
 * Array equations: 0
 * Algorithm blocks: 3
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002539/0.01629, allocations: 302.1 kB / 0.6615 GB, free: 28.45 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 8.908e-05/0.01638, allocations: 55.95 kB / 0.6616 GB, free: 28.43 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002181/0.0166, allocations: 120.9 kB / 0.6617 GB, free: 28.34 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 8.296e-06/0.01661, allocations: 5.266 kB / 0.6617 GB, free: 28.34 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.056e-06/0.01661, allocations: 0 / 0.6617 GB, free: 28.34 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001321/0.01674, allocations: 59.25 kB / 0.6618 GB, free: 28.31 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 6.63e-05/0.01681, allocations: 18.94 kB / 0.6618 GB, free: 28.3 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001376/0.01695, allocations: 20.48 kB / 0.6618 GB, free: 28.29 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001141/0.01706, allocations: 40.66 kB / 0.6618 GB, free: 28.29 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0007675/0.01783, allocations: 0.6889 MB / 0.6625 GB, free: 27.81 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0008538/0.01868, allocations: 0.9685 MB / 0.6635 GB, free: 27.1 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.000208/0.01889, allocations: 164.9 kB / 0.6636 GB, free: 27 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.000207/0.0191, allocations: 264.8 kB / 0.6639 GB, free: 26.86 MB / 0.5262 GB
Notification: Performance of Backend: time 3.81e-07/0.0191, allocations: 0 / 0.6639 GB, free: 26.86 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.002239/0.02134, allocations: 0.8535 MB / 0.6647 GB, free: 26.36 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.00273/0.02407, allocations: 1.725 MB / 0.6664 GB, free: 24.96 MB / 0.5262 GB
Notification: Performance of Templates: time 0.01294/0.037, allocations: 6.342 MB / 0.6726 GB, free: 24.48 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.Z_Unclassified.J06B_ProbableImmunoglobulins.DZIF10c.DZIF10c_1C.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.9245151991490275]