Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001257/0.001257, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001192/0.001192, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9768/0.9768, allocations: 177.1 MB / 203.8 MB, free: 5.613 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.635/1.635, allocations: 273.5 MB / 0.5213 GB, free: 14.82 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral,tolerance=1e-12,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral")
translateModel(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral,tolerance=1e-12,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.623e-06/1.623e-06, allocations: 0 / 0.6472 GB, free: 38.57 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.248e-05/2.411e-05, allocations: 6.547 kB / 0.6472 GB, free: 38.56 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral): time 0.003981/0.004005, allocations: 3.175 MB / 0.6503 GB, free: 36.51 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001304/0.005309, allocations: 0.715 MB / 0.651 GB, free: 36.04 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001415/0.00545, allocations: 2 kB / 0.651 GB, free: 36.04 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001507/0.005601, allocations: 40.34 kB / 0.651 GB, free: 36.02 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0002714/0.005873, allocations: 115.7 kB / 0.6511 GB, free: 35.97 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0003474/0.00622, allocations: 94.75 kB / 0.6512 GB, free: 35.91 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0004119/0.006632, allocations: 374.6 kB / 0.6516 GB, free: 35.72 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.00017/0.006802, allocations: 57.89 kB / 0.6517 GB, free: 35.69 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002731/0.007075, allocations: 192.1 kB / 0.6518 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002643/0.007339, allocations: 120.9 kB / 0.6519 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 5.128e-05/0.007391, allocations: 26.53 kB / 0.652 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 5.256e-05/0.007443, allocations: 29.38 kB / 0.652 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.551e-05/0.007489, allocations: 52.59 kB / 0.6521 GB, free: 35.54 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001303/0.007619, allocations: 113 kB / 0.6522 GB, free: 35.49 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.000296/0.007915, allocations: 224.1 kB / 0.6524 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.595e-06/0.007918, allocations: 0 / 0.6524 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 7.41e-07/0.007918, allocations: 0 / 0.6524 GB, free: 35.38 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 7.544e-06/0.007926, allocations: 0 / 0.6524 GB, free: 35.38 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 48
 * Number of variables: 48
Notification: Performance of Generate backend data structure: time 0.0008499/0.008776, allocations: 0.6797 MB / 0.653 GB, free: 34.78 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.424e-05/0.00882, allocations: 9.156 kB / 0.653 GB, free: 34.78 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001028/0.008923, allocations: 49.81 kB / 0.6531 GB, free: 34.76 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002513/0.009174, allocations: 205.1 kB / 0.6533 GB, free: 34.57 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.334e-05/0.009198, allocations: 22.12 kB / 0.6533 GB, free: 34.56 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 5.4e-05/0.009252, allocations: 27.08 kB / 0.6533 GB, free: 34.55 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004251/0.009677, allocations: 269 kB / 0.6536 GB, free: 34.38 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 2.586e-05/0.009703, allocations: 0 / 0.6536 GB, free: 34.38 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.518e-05/0.009728, allocations: 7.688 kB / 0.6536 GB, free: 34.37 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.236e-05/0.00974, allocations: 4.406 kB / 0.6536 GB, free: 34.37 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000257/0.009997, allocations: 160.9 kB / 0.6538 GB, free: 34.29 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0009558/0.01095, allocations: 0.6767 MB / 0.6544 GB, free: 33.76 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004323/0.01139, allocations: 193.9 kB / 0.6546 GB, free: 33.64 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001475/0.01153, allocations: 124.8 kB / 0.6547 GB, free: 33.55 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.801e-05/0.01156, allocations: 5.984 kB / 0.6547 GB, free: 33.55 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003521/0.01191, allocations: 334.3 kB / 0.655 GB, free: 33.27 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=34): time 3.346e-06/0.01192, allocations: 1.25 kB / 0.655 GB, free: 33.27 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=36): time 0.001575/0.01349, allocations: 0.945 MB / 0.656 GB, free: 32.62 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.051e-05/0.01354, allocations: 222.4 kB / 0.6562 GB, free: 32.37 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002324/0.01377, allocations: 277.9 kB / 0.6564 GB, free: 32.17 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 3.152e-05/0.01381, allocations: 39.3 kB / 0.6565 GB, free: 32.13 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 8.657e-05/0.01389, allocations: 190 kB / 0.6567 GB, free: 31.96 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 8.971e-05/0.01398, allocations: 120.6 kB / 0.6568 GB, free: 31.86 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001228/0.0141, allocations: 76.38 kB / 0.6569 GB, free: 31.82 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 7.338e-05/0.01418, allocations: 0.513 MB / 0.6574 GB, free: 31.31 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0002072/0.01439, allocations: 161.6 kB / 0.6575 GB, free: 31.18 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002525/0.01464, allocations: 292.7 kB / 0.6578 GB, free: 30.89 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0005763/0.01521, allocations: 0.53 MB / 0.6583 GB, free: 30.41 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.668e-06/0.01522, allocations: 1.125 kB / 0.6583 GB, free: 30.41 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=54) (initialization): time 0.0006238/0.01584, allocations: 486.3 kB / 0.6588 GB, free: 30.1 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 4.4e-05/0.01589, allocations: 93.28 kB / 0.6589 GB, free: 30 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.916e-06/0.0159, allocations: 4.312 kB / 0.6589 GB, free: 30 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.064e-05/0.01592, allocations: 5.562 kB / 0.6589 GB, free: 30 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002936/0.01621, allocations: 88.95 kB / 0.659 GB, free: 29.99 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.526e-05/0.01623, allocations: 9.688 kB / 0.659 GB, free: 29.99 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001773/0.0164, allocations: 19.34 kB / 0.659 GB, free: 29.98 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.877e-05/0.01643, allocations: 16.59 kB / 0.659 GB, free: 29.98 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 10 variables:
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 12
 * Number of states: 0 ()
 * Number of discrete variables: 21 ($PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.Cmin,$PRE.periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmax,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.periodicDose.absorptionLumen.rising,$PRE.central.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,periodicDose.absorptionLumen.rising,central.rising,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (51):
 * Single equations (assignments): 48
 * Array equations: 0
 * Algorithm blocks: 3
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002344/0.01667, allocations: 290.7 kB / 0.6593 GB, free: 29.72 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 6.146e-05/0.01673, allocations: 44.94 kB / 0.6593 GB, free: 29.7 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.073e-05/0.01678, allocations: 35.83 kB / 0.6594 GB, free: 29.68 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 7.454e-06/0.01679, allocations: 8.203 kB / 0.6594 GB, free: 29.68 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.124e-06/0.01679, allocations: 0.9688 kB / 0.6594 GB, free: 29.68 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001073/0.01689, allocations: 51.31 kB / 0.6594 GB, free: 29.65 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 5.23e-05/0.01695, allocations: 17.56 kB / 0.6594 GB, free: 29.64 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001249/0.01707, allocations: 16.38 kB / 0.6594 GB, free: 29.63 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.617e-05/0.01717, allocations: 30.08 kB / 0.6595 GB, free: 29.63 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0006696/0.01784, allocations: 0.5077 MB / 0.66 GB, free: 29.3 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0006975/0.01854, allocations: 0.785 MB / 0.6607 GB, free: 28.71 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001803/0.01872, allocations: 161.8 kB / 0.6609 GB, free: 28.61 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.0001195/0.01883, allocations: 193.7 kB / 0.6611 GB, free: 28.48 MB / 0.5262 GB
Notification: Performance of Backend: time 5.01e-07/0.01884, allocations: 2.594 kB / 0.6611 GB, free: 28.48 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0007127/0.01955, allocations: 489.3 kB / 0.6615 GB, free: 28.09 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.002444/0.02199, allocations: 1.596 MB / 0.6631 GB, free: 26.76 MB / 0.5262 GB
Notification: Performance of Templates: time 0.007473/0.02947, allocations: 4.694 MB / 0.6677 GB, free: 26.43 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.N_NervousSystem.N02B_OtherAnalgesicsAndAntipyretics.N02BE01_Paracetamol.Paracetamol_healthy_oral.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.882286413107067]