Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009217/0.0009217, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009431/0.0009431, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.909/0.909, allocations: 177.1 MB / 203.8 MB, free: 5.66 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.563/1.563, allocations: 273.5 MB / 0.5213 GB, free: 14.92 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C")
translateModel(Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.694e-06/1.694e-06, allocations: 0 / 0.6471 GB, free: 38.65 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.588e-05/2.757e-05, allocations: 2.312 kB / 0.6471 GB, free: 38.65 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C): time 0.00298/0.003007, allocations: 2.366 MB / 0.6494 GB, free: 37.12 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0007469/0.003754, allocations: 0.6042 MB / 0.65 GB, free: 36.72 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 8.441e-05/0.003839, allocations: 2.344 kB / 0.65 GB, free: 36.72 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.000104/0.003943, allocations: 28.56 kB / 0.65 GB, free: 36.7 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0001487/0.004091, allocations: 71.14 kB / 0.6501 GB, free: 36.68 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001886/0.00428, allocations: 58.67 kB / 0.6501 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0002207/0.004501, allocations: 248.8 kB / 0.6504 GB, free: 36.55 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001138/0.004614, allocations: 35.92 kB / 0.6504 GB, free: 36.53 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001404/0.004755, allocations: 122.9 kB / 0.6505 GB, free: 36.48 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001709/0.004926, allocations: 82.58 kB / 0.6506 GB, free: 36.45 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 3.164e-05/0.004957, allocations: 17.31 kB / 0.6506 GB, free: 36.45 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 2.572e-05/0.004983, allocations: 15.59 kB / 0.6506 GB, free: 36.45 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 2.67e-05/0.00501, allocations: 33.77 kB / 0.6507 GB, free: 36.43 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 7.226e-05/0.005082, allocations: 77.25 kB / 0.6508 GB, free: 36.4 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001673/0.005249, allocations: 149.3 kB / 0.6509 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.775e-06/0.005252, allocations: 1.125 kB / 0.6509 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 8.41e-07/0.005253, allocations: 0 / 0.6509 GB, free: 36.33 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.801e-06/0.005259, allocations: 0 / 0.6509 GB, free: 36.33 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 30
 * Number of variables: 30
Notification: Performance of Generate backend data structure: time 0.0005376/0.005796, allocations: 0.567 MB / 0.6514 GB, free: 35.81 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.705e-05/0.005833, allocations: 9.375 kB / 0.6515 GB, free: 35.81 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 6.388e-05/0.005897, allocations: 33.11 kB / 0.6515 GB, free: 35.79 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001575/0.006055, allocations: 173.2 kB / 0.6517 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.309e-05/0.006068, allocations: 15.44 kB / 0.6517 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.693e-05/0.006095, allocations: 13.72 kB / 0.6517 GB, free: 35.61 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002109/0.006306, allocations: 182.5 kB / 0.6519 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.309e-05/0.006319, allocations: 4.562 kB / 0.6519 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.361e-05/0.006332, allocations: 7.594 kB / 0.6519 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 8.596e-06/0.006341, allocations: 5.812 kB / 0.6519 GB, free: 35.48 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0001027/0.006444, allocations: 91.47 kB / 0.652 GB, free: 35.43 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0004888/0.006933, allocations: 0.5561 MB / 0.6525 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001405/0.007073, allocations: 120.1 kB / 0.6526 GB, free: 34.88 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 5.502e-05/0.007128, allocations: 68.72 kB / 0.6527 GB, free: 34.83 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.117e-05/0.007139, allocations: 8.125 kB / 0.6527 GB, free: 34.83 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001609/0.0073, allocations: 199.4 kB / 0.6529 GB, free: 34.66 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=21): time 1.763e-06/0.007302, allocations: 0 / 0.6529 GB, free: 34.66 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=22): time 0.0006937/0.007996, allocations: 0.6012 MB / 0.6535 GB, free: 34.23 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.759e-05/0.008023, allocations: 137.5 kB / 0.6536 GB, free: 34.07 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001128/0.008136, allocations: 246.2 kB / 0.6538 GB, free: 33.88 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.528e-05/0.008151, allocations: 35.64 kB / 0.6539 GB, free: 33.84 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 4.878e-05/0.0082, allocations: 172.4 kB / 0.654 GB, free: 33.68 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 3.645e-05/0.008237, allocations: 73.39 kB / 0.6541 GB, free: 33.63 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 5.338e-05/0.00829, allocations: 56.5 kB / 0.6542 GB, free: 33.59 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.837e-05/0.008338, allocations: 0.5051 MB / 0.6547 GB, free: 33.08 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 7.958e-05/0.008418, allocations: 109.6 kB / 0.6548 GB, free: 33 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 9.731e-05/0.008515, allocations: 214.8 kB / 0.655 GB, free: 32.77 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0002042/0.008719, allocations: 348.1 kB / 0.6553 GB, free: 32.46 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.364e-06/0.008722, allocations: 1.688 kB / 0.6553 GB, free: 32.46 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=35) (initialization): time 0.0002672/0.008989, allocations: 334.5 kB / 0.6556 GB, free: 32.24 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 3.118e-05/0.00902, allocations: 62.14 kB / 0.6557 GB, free: 32.18 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.211e-06/0.009026, allocations: 2.125 kB / 0.6557 GB, free: 32.18 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.615e-05/0.009042, allocations: 9.438 kB / 0.6557 GB, free: 32.18 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001489/0.009191, allocations: 64.2 kB / 0.6557 GB, free: 32.16 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.119e-05/0.009203, allocations: 9.781 kB / 0.6558 GB, free: 32.16 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 8.487e-05/0.009287, allocations: 14.91 kB / 0.6558 GB, free: 32.16 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.408e-05/0.009302, allocations: 17.53 kB / 0.6558 GB, free: 32.16 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 6 variables:
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 9
 * Number of states: 0 ()
 * Number of discrete variables: 13 ($PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.central.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,central.rising,$whenCondition3,$whenCondition2,$whenCondition1)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (33):
 * Single equations (assignments): 31
 * Array equations: 0
 * Algorithm blocks: 2
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001431/0.009445, allocations: 224.4 kB / 0.656 GB, free: 31.95 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 2.67e-05/0.009471, allocations: 25.39 kB / 0.656 GB, free: 31.93 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.931e-05/0.009501, allocations: 26.61 kB / 0.656 GB, free: 31.92 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.128e-06/0.009505, allocations: 1.906 kB / 0.6561 GB, free: 31.92 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.904e-06/0.009507, allocations: 3.938 kB / 0.6561 GB, free: 31.91 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.947e-05/0.009526, allocations: 15.3 kB / 0.6561 GB, free: 31.91 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 2.702e-05/0.009553, allocations: 9.375 kB / 0.6561 GB, free: 31.9 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 6.105e-05/0.009614, allocations: 14.2 kB / 0.6561 GB, free: 31.9 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 5.908e-05/0.009673, allocations: 17.09 kB / 0.6561 GB, free: 31.89 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0003315/0.01, allocations: 371.4 kB / 0.6565 GB, free: 31.64 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0003041/0.01031, allocations: 0.5672 MB / 0.657 GB, free: 31.2 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 7.85e-05/0.01039, allocations: 87.5 kB / 0.6571 GB, free: 31.14 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 6.442e-05/0.01045, allocations: 188.9 kB / 0.6573 GB, free: 31.01 MB / 0.5262 GB
Notification: Performance of Backend: time 2.51e-07/0.01045, allocations: 0 / 0.6573 GB, free: 31.01 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0004462/0.0109, allocations: 359.9 kB / 0.6576 GB, free: 30.71 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.001541/0.01244, allocations: 1.357 MB / 0.6589 GB, free: 29.57 MB / 0.5262 GB
Notification: Performance of Templates: time 0.005137/0.01758, allocations: 3.35 MB / 0.6622 GB, free: 29.33 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.L_AntineoplasticAndImmunomodulatingAgents.L01B_Antimetabolites.L01BC02_Fluorouracil.Fluorouracil_1C.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.670938744908199]