Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001355/0.001355, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001528/0.001528, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9458/0.9458, allocations: 177.1 MB / 203.8 MB, free: 5.621 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.619/1.619, allocations: 273.5 MB / 0.5213 GB, free: 14.82 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM,tolerance=1e-12,outputFormat="empty",numberOfIntervals=155520,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM")
translateModel(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM,tolerance=1e-12,outputFormat="empty",numberOfIntervals=155520,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.242e-06/1.242e-06, allocations: 0 / 0.6472 GB, free: 38.55 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.414e-05/2.538e-05, allocations: 6.391 kB / 0.6472 GB, free: 38.54 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM): time 0.003062/0.003087, allocations: 3.549 MB / 0.6506 GB, free: 36.25 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0009442/0.004032, allocations: 0.7982 MB / 0.6514 GB, free: 35.72 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.000108/0.00414, allocations: 3.781 kB / 0.6514 GB, free: 35.72 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001347/0.004274, allocations: 53.64 kB / 0.6515 GB, free: 35.69 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0002111/0.004485, allocations: 152.2 kB / 0.6516 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0002754/0.004761, allocations: 112.9 kB / 0.6517 GB, free: 35.55 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003185/0.005079, allocations: 488.8 kB / 0.6522 GB, free: 35.3 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001508/0.00523, allocations: 72.47 kB / 0.6523 GB, free: 35.26 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001935/0.005423, allocations: 255.9 kB / 0.6525 GB, free: 35.16 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002324/0.005656, allocations: 158 kB / 0.6527 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 4.095e-05/0.005697, allocations: 33.06 kB / 0.6527 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 3.901e-05/0.005736, allocations: 37.69 kB / 0.6527 GB, free: 35.11 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.222e-05/0.005778, allocations: 70.69 kB / 0.6528 GB, free: 35.06 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001146/0.005893, allocations: 144 kB / 0.6529 GB, free: 35 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002517/0.006144, allocations: 280.8 kB / 0.6532 GB, free: 34.87 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.515e-06/0.006147, allocations: 1.281 kB / 0.6532 GB, free: 34.87 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.042e-06/0.006148, allocations: 2 kB / 0.6532 GB, free: 34.87 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.59e-06/0.006154, allocations: 0 / 0.6532 GB, free: 34.87 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 67
 * Number of variables: 67
Notification: Performance of Generate backend data structure: time 0.0007262/0.00688, allocations: 0.7916 MB / 0.654 GB, free: 34.2 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.04e-05/0.00692, allocations: 8.656 kB / 0.654 GB, free: 34.2 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 8.713e-05/0.007007, allocations: 65.17 kB / 0.654 GB, free: 34.16 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002186/0.007226, allocations: 234.8 kB / 0.6543 GB, free: 33.96 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.328e-05/0.007249, allocations: 22 kB / 0.6543 GB, free: 33.95 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 4.897e-05/0.007298, allocations: 33.08 kB / 0.6543 GB, free: 33.94 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003694/0.007667, allocations: 357.6 kB / 0.6547 GB, free: 33.71 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.735e-05/0.007685, allocations: 1.75 kB / 0.6547 GB, free: 33.71 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.265e-05/0.007707, allocations: 11.88 kB / 0.6547 GB, free: 33.71 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.109e-05/0.007719, allocations: 6.344 kB / 0.6547 GB, free: 33.71 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002636/0.007982, allocations: 226.6 kB / 0.6549 GB, free: 33.6 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0008769/0.008859, allocations: 0.8844 MB / 0.6558 GB, free: 32.95 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0003069/0.009166, allocations: 245.6 kB / 0.656 GB, free: 32.79 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001344/0.0093, allocations: 165.1 kB / 0.6561 GB, free: 32.67 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 2.852e-05/0.009329, allocations: 11.67 kB / 0.6562 GB, free: 32.66 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.000351/0.00968, allocations: 444.6 kB / 0.6566 GB, free: 32.3 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=46): time 2.194e-06/0.009682, allocations: 0.5625 kB / 0.6566 GB, free: 32.3 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=49): time 0.00149/0.01117, allocations: 1.314 MB / 0.6579 GB, free: 31.41 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.219e-05/0.01122, allocations: 305.1 kB / 0.6582 GB, free: 31.05 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001688/0.01139, allocations: 305.7 kB / 0.6584 GB, free: 30.85 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 2.31e-05/0.01142, allocations: 39.36 kB / 0.6585 GB, free: 30.81 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 7.582e-05/0.01149, allocations: 225.6 kB / 0.6587 GB, free: 30.61 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 7.053e-05/0.01156, allocations: 166.6 kB / 0.6589 GB, free: 30.48 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.944e-05/0.01165, allocations: 92.89 kB / 0.6589 GB, free: 30.43 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 6.614e-05/0.01172, allocations: 0.5208 MB / 0.6595 GB, free: 29.92 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001427/0.01186, allocations: 209 kB / 0.6597 GB, free: 29.76 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001837/0.01204, allocations: 382.3 kB / 0.66 GB, free: 29.38 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0004222/0.01247, allocations: 0.7056 MB / 0.6607 GB, free: 28.74 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 4.509e-06/0.01247, allocations: 1.438 kB / 0.6607 GB, free: 28.74 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=73) (initialization): time 0.0004975/0.01297, allocations: 0.6369 MB / 0.6613 GB, free: 28.34 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 4.214e-05/0.01301, allocations: 119.8 kB / 0.6614 GB, free: 28.21 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.837e-06/0.01302, allocations: 7.562 kB / 0.6615 GB, free: 28.21 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.984e-05/0.01304, allocations: 10.41 kB / 0.6615 GB, free: 28.21 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002487/0.01329, allocations: 115.3 kB / 0.6616 GB, free: 28.2 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.472e-05/0.0133, allocations: 14.22 kB / 0.6616 GB, free: 28.19 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001254/0.01343, allocations: 24.53 kB / 0.6616 GB, free: 28.18 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.858e-05/0.01346, allocations: 27.72 kB / 0.6616 GB, free: 28.18 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 14 variables:
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicDose.absorptionLumen.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         periodicDose.absorptionLumen.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         periodicDose.absorptionLumen.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 16
 * Number of states: 0 ()
 * Number of discrete variables: 29 ($PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.periodicDose.absorptionLumen.Cmin,periodicDose.absorptionLumen.Cmin,$PRE.periodicDose.absorptionLumen.Cmax,periodicDose.absorptionLumen.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.peripheral.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.periodicDose.absorptionLumen.rising,$PRE.central.rising,peripheral.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,periodicDose.absorptionLumen.rising,central.rising,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (69):
 * Single equations (assignments): 65
 * Array equations: 0
 * Algorithm blocks: 4
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002154/0.01367, allocations: 341.1 kB / 0.662 GB, free: 27.88 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.266e-05/0.01372, allocations: 61.42 kB / 0.662 GB, free: 27.85 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 4.27e-05/0.01377, allocations: 36.66 kB / 0.6621 GB, free: 27.82 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 5.62e-06/0.01377, allocations: 4.812 kB / 0.6621 GB, free: 27.82 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.274e-06/0.01378, allocations: 0 / 0.6621 GB, free: 27.82 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 8.805e-05/0.01386, allocations: 65.66 kB / 0.6621 GB, free: 27.79 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.515e-05/0.01391, allocations: 20.22 kB / 0.6621 GB, free: 27.78 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 8.707e-05/0.014, allocations: 13.84 kB / 0.6622 GB, free: 27.77 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 8.541e-05/0.01408, allocations: 41.14 kB / 0.6622 GB, free: 27.77 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0005805/0.01466, allocations: 0.6599 MB / 0.6628 GB, free: 27.34 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0006302/0.01529, allocations: 0.9921 MB / 0.6638 GB, free: 26.64 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001648/0.01546, allocations: 214.2 kB / 0.664 GB, free: 26.5 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 9.39e-05/0.01555, allocations: 205.3 kB / 0.6642 GB, free: 26.36 MB / 0.5262 GB
Notification: Performance of Backend: time 3.31e-07/0.01555, allocations: 1.406 kB / 0.6642 GB, free: 26.36 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0005574/0.01611, allocations: 0.6218 MB / 0.6648 GB, free: 25.85 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.001869/0.01798, allocations: 1.832 MB / 0.6666 GB, free: 24.36 MB / 0.5262 GB
Notification: Performance of Templates: time 0.008006/0.02598, allocations: 5.811 MB / 0.6723 GB, free: 23.91 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.J_AntiinfectivesForSystemicUse.J06B_Immunoglobulins.J06BD01_Palivizumab.Palivizumab_IM.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 5.005207685055211]