Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009891/0.0009891, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001003/0.001003, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9992/0.9992, allocations: 177.1 MB / 203.8 MB, free: 5.227 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.556/1.556, allocations: 273.5 MB / 0.5213 GB, free: 14.82 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV")
translateModel(Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.923e-06/1.923e-06, allocations: 0 / 0.648 GB, free: 37.95 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.469e-05/2.661e-05, allocations: 4.375 kB / 0.648 GB, free: 37.95 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV): time 0.005099/0.005126, allocations: 3.802 MB / 0.6518 GB, free: 35.39 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.001137/0.006263, allocations: 0.6762 MB / 0.6524 GB, free: 34.95 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001233/0.006386, allocations: 7.781 kB / 0.6524 GB, free: 34.95 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001496/0.006536, allocations: 35.64 kB / 0.6525 GB, free: 34.93 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0002482/0.006784, allocations: 109.6 kB / 0.6526 GB, free: 34.88 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0002705/0.007054, allocations: 74.73 kB / 0.6526 GB, free: 34.84 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0003557/0.00741, allocations: 358 kB / 0.653 GB, free: 34.66 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001729/0.007583, allocations: 59.84 kB / 0.653 GB, free: 34.63 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002275/0.00781, allocations: 189.7 kB / 0.6532 GB, free: 34.55 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002631/0.008074, allocations: 115 kB / 0.6533 GB, free: 34.52 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 4.404e-05/0.008118, allocations: 23.41 kB / 0.6533 GB, free: 34.52 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 4.348e-05/0.008161, allocations: 23.56 kB / 0.6534 GB, free: 34.52 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.531e-05/0.008206, allocations: 59.7 kB / 0.6534 GB, free: 34.48 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001277/0.008334, allocations: 104 kB / 0.6535 GB, free: 34.44 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002875/0.008622, allocations: 208.8 kB / 0.6537 GB, free: 34.35 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 3.507e-06/0.008625, allocations: 1.656 kB / 0.6537 GB, free: 34.35 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 1.312e-06/0.008626, allocations: 3.938 kB / 0.6537 GB, free: 34.34 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.51e-06/0.008632, allocations: 0 / 0.6537 GB, free: 34.34 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 49
 * Number of variables: 49
Notification: Performance of Generate backend data structure: time 0.0008655/0.009497, allocations: 0.6758 MB / 0.6544 GB, free: 33.75 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.724e-05/0.009545, allocations: 9.438 kB / 0.6544 GB, free: 33.75 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0001035/0.009648, allocations: 53.88 kB / 0.6545 GB, free: 33.73 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0002505/0.009899, allocations: 193.1 kB / 0.6546 GB, free: 33.55 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.328e-05/0.009922, allocations: 14.62 kB / 0.6546 GB, free: 33.54 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 4.894e-05/0.009971, allocations: 32.39 kB / 0.6547 GB, free: 33.53 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0004099/0.01038, allocations: 265.3 kB / 0.6549 GB, free: 33.36 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 2.042e-05/0.0104, allocations: 0 / 0.6549 GB, free: 33.36 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.623e-05/0.01043, allocations: 12.34 kB / 0.6549 GB, free: 33.35 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.242e-05/0.01044, allocations: 5.031 kB / 0.6549 GB, free: 33.35 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0002519/0.01069, allocations: 161.2 kB / 0.6551 GB, free: 33.27 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.001079/0.01177, allocations: 0.7485 MB / 0.6558 GB, free: 32.69 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.000286/0.01206, allocations: 180.3 kB / 0.656 GB, free: 32.57 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001327/0.01219, allocations: 116.8 kB / 0.6561 GB, free: 32.49 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.439e-05/0.0122, allocations: 4.188 kB / 0.6561 GB, free: 32.49 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0003058/0.01251, allocations: 332.3 kB / 0.6564 GB, free: 32.21 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=33): time 2.756e-06/0.01251, allocations: 0 / 0.6564 GB, free: 32.21 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=35): time 0.001575/0.01409, allocations: 0.9374 MB / 0.6574 GB, free: 31.56 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.947e-05/0.01415, allocations: 220.5 kB / 0.6576 GB, free: 31.3 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0002616/0.01441, allocations: 282.2 kB / 0.6578 GB, free: 31.11 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 3.009e-05/0.01444, allocations: 35.45 kB / 0.6579 GB, free: 31.07 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 8.824e-05/0.01453, allocations: 198 kB / 0.6581 GB, free: 30.89 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 9.111e-05/0.01462, allocations: 115.9 kB / 0.6582 GB, free: 30.8 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001282/0.01475, allocations: 75.27 kB / 0.6582 GB, free: 30.75 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 7.812e-05/0.01482, allocations: 0.5177 MB / 0.6587 GB, free: 30.24 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.00019/0.01501, allocations: 154.2 kB / 0.6589 GB, free: 30.12 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.000207/0.01522, allocations: 304 kB / 0.6592 GB, free: 29.81 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0004565/0.01568, allocations: 0.5398 MB / 0.6597 GB, free: 29.32 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.735e-06/0.01568, allocations: 0 / 0.6597 GB, free: 29.32 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=54) (initialization): time 0.0005558/0.01624, allocations: 494.1 kB / 0.6602 GB, free: 29 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 4.357e-05/0.01628, allocations: 93.48 kB / 0.6603 GB, free: 28.91 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 8.226e-06/0.01629, allocations: 2.906 kB / 0.6603 GB, free: 28.91 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 2.192e-05/0.01631, allocations: 9.188 kB / 0.6603 GB, free: 28.91 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0003262/0.01664, allocations: 91.91 kB / 0.6604 GB, free: 28.89 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.566e-05/0.01665, allocations: 4.188 kB / 0.6604 GB, free: 28.89 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001835/0.01684, allocations: 15.19 kB / 0.6604 GB, free: 28.89 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 3.089e-05/0.01687, allocations: 21.56 kB / 0.6604 GB, free: 28.89 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 10 variables:
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 13
 * Number of states: 0 ()
 * Number of discrete variables: 21 ($PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.peripheral.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.central.rising,peripheral.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,central.rising,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition5)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (51):
 * Single equations (assignments): 48
 * Array equations: 0
 * Algorithm blocks: 3
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002284/0.0171, allocations: 288.3 kB / 0.6607 GB, free: 28.62 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 6.295e-05/0.01716, allocations: 44.55 kB / 0.6607 GB, free: 28.61 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 5.195e-05/0.01721, allocations: 27.16 kB / 0.6608 GB, free: 28.59 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.011e-06/0.01722, allocations: 2.906 kB / 0.6608 GB, free: 28.59 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.214e-06/0.01722, allocations: 4.031 kB / 0.6608 GB, free: 28.59 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 3.713e-05/0.01726, allocations: 25.81 kB / 0.6608 GB, free: 28.57 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 5.591e-05/0.01731, allocations: 13.62 kB / 0.6608 GB, free: 28.56 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001372/0.01745, allocations: 19.27 kB / 0.6608 GB, free: 28.55 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001001/0.01755, allocations: 24.48 kB / 0.6608 GB, free: 28.55 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0006743/0.01822, allocations: 0.5065 MB / 0.6613 GB, free: 28.22 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0006757/0.0189, allocations: 0.7712 MB / 0.6621 GB, free: 27.64 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001731/0.01907, allocations: 155.2 kB / 0.6622 GB, free: 27.54 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 0.000115/0.01919, allocations: 190.2 kB / 0.6624 GB, free: 27.41 MB / 0.5262 GB
Notification: Performance of Backend: time 5.51e-07/0.01919, allocations: 0 / 0.6624 GB, free: 27.41 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.000692/0.01988, allocations: 0.4891 MB / 0.6629 GB, free: 27.01 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.002361/0.02224, allocations: 1.578 MB / 0.6644 GB, free: 25.7 MB / 0.5262 GB
Notification: Performance of Templates: time 0.006222/0.02846, allocations: 4.481 MB / 0.6688 GB, free: 25.37 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_IV.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.780452714068815]