Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001459/0.001459, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001252/0.001252, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9572/0.9572, allocations: 177.1 MB / 203.8 MB, free: 5.645 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.589/1.589, allocations: 273.5 MB / 0.5213 GB, free: 14.92 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1")
translateModel(Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1,tolerance=1e-09,outputFormat="empty",numberOfIntervals=86400,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.423e-06/1.423e-06, allocations: 0 / 0.648 GB, free: 37.89 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.381e-05/1.523e-05, allocations: 2.312 kB / 0.648 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1): time 0.003043/0.003059, allocations: 3.795 MB / 0.6518 GB, free: 35.33 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0008801/0.003939, allocations: 0.6764 MB / 0.6524 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001005/0.004039, allocations: 5.219 kB / 0.6524 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 0.0001214/0.004161, allocations: 41.5 kB / 0.6525 GB, free: 34.86 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0001851/0.004346, allocations: 103.2 kB / 0.6526 GB, free: 34.82 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0002031/0.004549, allocations: 78.69 kB / 0.6526 GB, free: 34.78 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0002691/0.004818, allocations: 360.7 kB / 0.653 GB, free: 34.61 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001336/0.004951, allocations: 57.7 kB / 0.653 GB, free: 34.57 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001641/0.005116, allocations: 185.9 kB / 0.6532 GB, free: 34.5 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001947/0.00531, allocations: 112 kB / 0.6533 GB, free: 34.47 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 3.737e-05/0.005348, allocations: 24.62 kB / 0.6533 GB, free: 34.47 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 3.113e-05/0.005379, allocations: 24.22 kB / 0.6534 GB, free: 34.47 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.573e-05/0.005414, allocations: 55.98 kB / 0.6534 GB, free: 34.43 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 9.016e-05/0.005505, allocations: 111.8 kB / 0.6535 GB, free: 34.39 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002125/0.005717, allocations: 211.8 kB / 0.6537 GB, free: 34.29 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 1.974e-06/0.005719, allocations: 0 / 0.6537 GB, free: 34.29 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 6.51e-07/0.00572, allocations: 0.9688 kB / 0.6537 GB, free: 34.29 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.069e-06/0.005725, allocations: 0 / 0.6537 GB, free: 34.29 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 49
 * Number of variables: 49
Notification: Performance of Generate backend data structure: time 0.0006406/0.006366, allocations: 0.6729 MB / 0.6544 GB, free: 33.7 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.603e-05/0.006402, allocations: 10.69 kB / 0.6544 GB, free: 33.7 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 7.422e-05/0.006476, allocations: 52.5 kB / 0.6544 GB, free: 33.67 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.000184/0.00666, allocations: 198.4 kB / 0.6546 GB, free: 33.49 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.701e-05/0.006677, allocations: 16.38 kB / 0.6546 GB, free: 33.48 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 3.708e-05/0.006714, allocations: 31.67 kB / 0.6547 GB, free: 33.47 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0002644/0.006978, allocations: 263.7 kB / 0.6549 GB, free: 33.3 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.393e-05/0.006992, allocations: 1.875 kB / 0.6549 GB, free: 33.3 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.714e-05/0.007009, allocations: 12.41 kB / 0.6549 GB, free: 33.29 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 9.948e-06/0.007019, allocations: 5.094 kB / 0.6549 GB, free: 33.29 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.000162/0.007181, allocations: 160.9 kB / 0.6551 GB, free: 33.21 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0006755/0.007857, allocations: 0.7471 MB / 0.6558 GB, free: 32.64 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0001781/0.008035, allocations: 179.4 kB / 0.656 GB, free: 32.52 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 9.881e-05/0.008134, allocations: 119.3 kB / 0.6561 GB, free: 32.43 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.03e-05/0.008144, allocations: 2.062 kB / 0.6561 GB, free: 32.43 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002182/0.008362, allocations: 330.3 kB / 0.6564 GB, free: 32.16 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=33): time 1.623e-06/0.008364, allocations: 1.75 kB / 0.6564 GB, free: 32.16 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=35): time 0.0009649/0.009329, allocations: 0.9388 MB / 0.6574 GB, free: 31.5 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.023e-05/0.009369, allocations: 220.3 kB / 0.6576 GB, free: 31.25 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001761/0.009545, allocations: 279.7 kB / 0.6578 GB, free: 31.05 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 2.072e-05/0.009566, allocations: 38.2 kB / 0.6579 GB, free: 31.02 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 6.357e-05/0.009629, allocations: 194.4 kB / 0.6581 GB, free: 30.84 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 5.387e-05/0.009683, allocations: 120.2 kB / 0.6582 GB, free: 30.75 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.429e-05/0.009768, allocations: 74.69 kB / 0.6582 GB, free: 30.7 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 5.709e-05/0.009825, allocations: 0.5146 MB / 0.6587 GB, free: 30.19 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0001234/0.009948, allocations: 153 kB / 0.6589 GB, free: 30.07 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001603/0.01011, allocations: 305.2 kB / 0.6592 GB, free: 29.76 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0003172/0.01043, allocations: 0.5373 MB / 0.6597 GB, free: 29.27 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.763e-06/0.01043, allocations: 1.438 kB / 0.6597 GB, free: 29.27 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=54) (initialization): time 0.0003557/0.01078, allocations: 499 kB / 0.6602 GB, free: 28.95 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 2.819e-05/0.01081, allocations: 91.5 kB / 0.6603 GB, free: 28.86 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 6.082e-06/0.01082, allocations: 2.812 kB / 0.6603 GB, free: 28.86 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.445e-05/0.01083, allocations: 5.688 kB / 0.6603 GB, free: 28.86 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0001995/0.01103, allocations: 83.92 kB / 0.6604 GB, free: 28.85 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.162e-05/0.01104, allocations: 11.14 kB / 0.6604 GB, free: 28.84 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001071/0.01115, allocations: 25.83 kB / 0.6604 GB, free: 28.84 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.732e-05/0.01117, allocations: 12.69 kB / 0.6604 GB, free: 28.84 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 10 variables:
         central.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         periodicDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         periodicDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         peripheral.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         peripheral.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         central.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheral.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         central.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 13
 * Number of states: 0 ()
 * Number of discrete variables: 21 ($PRE.peripheral.Cmin,peripheral.Cmin,$PRE.peripheral.Cmax,peripheral.Cmax,$PRE.central.Cmin,central.Cmin,$PRE.central.Cmax,central.Cmax,$PRE.peripheral.rising,$PRE.periodicDose.pulse.count,$PRE.periodicDose.pulse.T_start,$PRE.central.rising,peripheral.rising,periodicDose.pulse.count,periodicDose.pulse.T_start,central.rising,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition5)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (51):
 * Single equations (assignments): 48
 * Array equations: 0
 * Algorithm blocks: 3
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0001585/0.01133, allocations: 294 kB / 0.6607 GB, free: 28.57 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 3.814e-05/0.01136, allocations: 39.67 kB / 0.6607 GB, free: 28.55 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 3.751e-05/0.0114, allocations: 31.73 kB / 0.6607 GB, free: 28.53 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.408e-06/0.01141, allocations: 0 / 0.6607 GB, free: 28.53 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.312e-06/0.01141, allocations: 0 / 0.6607 GB, free: 28.53 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 2.483e-05/0.01143, allocations: 31.94 kB / 0.6608 GB, free: 28.51 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 3.628e-05/0.01147, allocations: 11 kB / 0.6608 GB, free: 28.51 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 6.868e-05/0.01154, allocations: 17.84 kB / 0.6608 GB, free: 28.5 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.632e-05/0.0116, allocations: 27.8 kB / 0.6608 GB, free: 28.5 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0004185/0.01202, allocations: 0.5024 MB / 0.6613 GB, free: 28.16 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0004338/0.01246, allocations: 0.7747 MB / 0.6621 GB, free: 27.59 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001133/0.01257, allocations: 154.6 kB / 0.6622 GB, free: 27.49 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 7.85e-05/0.01265, allocations: 194.7 kB / 0.6624 GB, free: 27.36 MB / 0.5262 GB
Notification: Performance of Backend: time 2.41e-07/0.01265, allocations: 0 / 0.6624 GB, free: 27.36 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0004685/0.01312, allocations: 497.7 kB / 0.6629 GB, free: 26.95 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.001494/0.01461, allocations: 1.583 MB / 0.6644 GB, free: 25.64 MB / 0.5262 GB
Notification: Performance of Templates: time 0.005979/0.02059, allocations: 4.49 MB / 0.6688 GB, free: 25.3 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1.sim & ./Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.Drugs.C_CardiovascularSystem.C01A_CardiacGlycosides.C01AA05_Digoxin.Digoxin_1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.761714844964445]