Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009848/0.0009848, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.0009624/0.0009624, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.9574/0.9574, allocations: 177.1 MB / 203.8 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.568/1.568, allocations: 273.5 MB / 0.5213 GB, free: 14.91 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK")
translateModel(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK,tolerance=1e-06,outputFormat="empty",numberOfIntervals=50000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 2.504e-06/2.504e-06, allocations: 1.422 kB / 0.647 GB, free: 38.74 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.033e-05/2.283e-05, allocations: 3.156 kB / 0.647 GB, free: 38.74 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK): time 0.001808/0.001831, allocations: 1.301 MB / 0.6482 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0001979/0.002029, allocations: 58.59 kB / 0.6483 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.993e-05/0.002069, allocations: 0 / 0.6483 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 8.305e-05/0.002152, allocations: 0 / 0.6483 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.118e-05/0.002193, allocations: 9.453 kB / 0.6483 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001651/0.002358, allocations: 9.938 kB / 0.6483 GB, free: 37.84 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.0001346/0.002493, allocations: 150.1 kB / 0.6485 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 3.989e-05/0.002533, allocations: 7.516 kB / 0.6485 GB, free: 37.8 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001033/0.002636, allocations: 72.95 kB / 0.6485 GB, free: 37.78 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.0001204/0.002756, allocations: 75.19 kB / 0.6486 GB, free: 37.77 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.743e-05/0.002784, allocations: 9.812 kB / 0.6486 GB, free: 37.77 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.402e-05/0.002798, allocations: 7.344 kB / 0.6486 GB, free: 37.77 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 3.023e-05/0.002828, allocations: 35.39 kB / 0.6487 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 4.217e-05/0.00287, allocations: 32.22 kB / 0.6487 GB, free: 37.75 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0001057/0.002976, allocations: 101.3 kB / 0.6488 GB, free: 37.71 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.144e-06/0.002978, allocations: 3.594 kB / 0.6488 GB, free: 37.71 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 9.42e-07/0.002979, allocations: 0 / 0.6488 GB, free: 37.71 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.188e-06/0.002983, allocations: 1.531 kB / 0.6488 GB, free: 37.71 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 12
 * Number of variables: 12
Notification: Performance of Generate backend data structure: time 0.0008856/0.003869, allocations: 0.592 MB / 0.6494 GB, free: 37.32 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.604e-05/0.003905, allocations: 7.812 kB / 0.6494 GB, free: 37.32 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.893e-05/0.003954, allocations: 6.812 kB / 0.6494 GB, free: 37.32 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001156/0.004069, allocations: 132.1 kB / 0.6495 GB, free: 37.19 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 9.407e-06/0.004079, allocations: 8.312 kB / 0.6495 GB, free: 37.18 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 1.552e-05/0.004094, allocations: 7.297 kB / 0.6495 GB, free: 37.18 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.000267/0.004361, allocations: 157.5 kB / 0.6497 GB, free: 37.1 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 7.364e-06/0.004369, allocations: 192 / 0.6497 GB, free: 37.1 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 1.316e-05/0.004382, allocations: 7.688 kB / 0.6497 GB, free: 37.1 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.824e-06/0.00439, allocations: 384 / 0.6497 GB, free: 37.1 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 8.75e-05/0.004477, allocations: 30.28 kB / 0.6497 GB, free: 37.09 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0002101/0.004687, allocations: 272.5 kB / 0.65 GB, free: 36.8 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 7.757e-05/0.004765, allocations: 52.06 kB / 0.65 GB, free: 36.76 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 7.174e-05/0.004837, allocations: 37.67 kB / 0.6501 GB, free: 36.75 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.437e-05/0.004851, allocations: 5.719 kB / 0.6501 GB, free: 36.74 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.621e-05/0.004867, allocations: 39.58 kB / 0.6501 GB, free: 36.7 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=11): time 1.082e-06/0.004868, allocations: 0 / 0.6501 GB, free: 36.7 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=11): time 0.0002586/0.005127, allocations: 111.3 kB / 0.6502 GB, free: 36.64 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.442e-05/0.005141, allocations: 53.09 kB / 0.6503 GB, free: 36.58 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 6.018e-05/0.005201, allocations: 168.8 kB / 0.6504 GB, free: 36.41 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 1.138e-05/0.005213, allocations: 27.23 kB / 0.6504 GB, free: 36.38 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 3.36e-05/0.005246, allocations: 138.4 kB / 0.6506 GB, free: 36.25 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.056e-05/0.005267, allocations: 43.41 kB / 0.6506 GB, free: 36.21 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 4.534e-05/0.005312, allocations: 36.16 kB / 0.6507 GB, free: 36.18 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.941e-05/0.005362, allocations: 0.4921 MB / 0.6511 GB, free: 35.68 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 5.107e-05/0.005413, allocations: 16.45 kB / 0.6511 GB, free: 35.68 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 5.709e-05/0.00547, allocations: 37.88 kB / 0.6512 GB, free: 35.65 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.000103/0.005573, allocations: 62.42 kB / 0.6512 GB, free: 35.61 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.394e-06/0.005575, allocations: 3.438 kB / 0.6512 GB, free: 35.61 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=12) (initialization): time 0.0001541/0.005729, allocations: 86.91 kB / 0.6513 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.378e-05/0.005743, allocations: 7.656 kB / 0.6513 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 3.908e-06/0.005747, allocations: 1.094 kB / 0.6513 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.305e-05/0.00576, allocations: 5.25 kB / 0.6513 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002129/0.005973, allocations: 75.33 kB / 0.6514 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 8.155e-06/0.005981, allocations: 1.469 kB / 0.6514 GB, free: 35.57 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001401/0.006121, allocations: 66.86 kB / 0.6515 GB, free: 35.56 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 1.218e-05/0.006134, allocations: 3.938 kB / 0.6515 GB, free: 35.56 MB / 0.5262 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 2
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (12):
 * Single equations (assignments): 12
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 4.787e-05/0.006181, allocations: 158.5 kB / 0.6516 GB, free: 35.39 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.916e-05/0.006201, allocations: 8.953 kB / 0.6516 GB, free: 35.39 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.0002461/0.006447, allocations: 181.5 kB / 0.6518 GB, free: 35.3 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 4.919e-06/0.006452, allocations: 6.312 kB / 0.6518 GB, free: 35.3 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.442e-06/0.006453, allocations: 5 kB / 0.6518 GB, free: 35.29 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 1.307e-05/0.006466, allocations: 10.16 kB / 0.6518 GB, free: 35.29 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.527e-05/0.006481, allocations: 1.875 kB / 0.6518 GB, free: 35.29 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001384/0.00662, allocations: 59.92 kB / 0.6519 GB, free: 35.28 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 6.039e-05/0.00668, allocations: 28.17 kB / 0.6519 GB, free: 35.27 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0002826/0.006963, allocations: 295.6 kB / 0.6522 GB, free: 35.1 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0002096/0.007172, allocations: 410.5 kB / 0.6526 GB, free: 34.76 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 8.36e-05/0.007256, allocations: 58.61 kB / 0.6527 GB, free: 34.73 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 2.446e-05/0.007281, allocations: 136 kB / 0.6528 GB, free: 34.61 MB / 0.5262 GB
Notification: Performance of Backend: time 3.01e-07/0.007281, allocations: 1.688 kB / 0.6528 GB, free: 34.61 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0002999/0.007581, allocations: 130.4 kB / 0.6529 GB, free: 34.52 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.0005108/0.008091, allocations: 0.863 MB / 0.6538 GB, free: 33.67 MB / 0.5262 GB
Notification: Performance of Templates: time 0.00406/0.01215, allocations: 3.046 MB / 0.6567 GB, free: 33.45 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Remdesivir.Eq10RemdesivirPK.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.80932948901318]