Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.0009253/0.0009253, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.000919/0.000919, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.043/1.043, allocations: 177.1 MB / 203.8 MB, free: 5.652 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.548/1.548, allocations: 273.5 MB / 0.5213 GB, free: 14.89 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1")
translateModel(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1,tolerance=1e-06,outputFormat="empty",numberOfIntervals=500,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.753e-06/1.753e-06, allocations: 0 / 0.647 GB, free: 38.76 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 2.272e-05/2.448e-05, allocations: 3.953 kB / 0.647 GB, free: 38.75 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1): time 0.001444/0.001468, allocations: 0.5295 MB / 0.6475 GB, free: 38.47 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.000163/0.001631, allocations: 25.61 kB / 0.6475 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 3.067e-05/0.001662, allocations: 0 / 0.6475 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 1.808e-05/0.00168, allocations: 1.688 kB / 0.6475 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 4.503e-05/0.001725, allocations: 2.031 kB / 0.6475 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0001152/0.00184, allocations: 13.58 kB / 0.6475 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 6.734e-05/0.001908, allocations: 14.64 kB / 0.6475 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 4.206e-05/0.00195, allocations: 6.75 kB / 0.6475 GB, free: 38.45 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 4.134e-05/0.001991, allocations: 11.05 kB / 0.6476 GB, free: 38.44 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 7.065e-05/0.002062, allocations: 12.19 kB / 0.6476 GB, free: 38.44 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 2.117e-05/0.002083, allocations: 0 / 0.6476 GB, free: 38.44 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 1.012e-05/0.002093, allocations: 3.781 kB / 0.6476 GB, free: 38.44 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 1.632e-05/0.002109, allocations: 7.656 kB / 0.6476 GB, free: 38.43 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 2.388e-05/0.002133, allocations: 4.219 kB / 0.6476 GB, free: 38.43 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 6.867e-05/0.002202, allocations: 11.44 kB / 0.6476 GB, free: 38.43 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.405e-06/0.002204, allocations: 3.094 kB / 0.6476 GB, free: 38.43 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 8.02e-07/0.002205, allocations: 0 / 0.6476 GB, free: 38.43 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 4.689e-06/0.00221, allocations: 0 / 0.6476 GB, free: 38.43 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3
 * Number of variables: 3
Notification: Performance of Generate backend data structure: time 0.0003213/0.002531, allocations: 361.3 kB / 0.6479 GB, free: 38.06 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 4.226e-05/0.002573, allocations: 7.375 kB / 0.6479 GB, free: 38.06 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 4.199e-05/0.002615, allocations: 8.344 kB / 0.648 GB, free: 38.06 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 7.32e-05/0.002689, allocations: 115.8 kB / 0.6481 GB, free: 37.93 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 1.216e-05/0.002701, allocations: 4.375 kB / 0.6481 GB, free: 37.92 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 2.085e-05/0.002722, allocations: 7.109 kB / 0.6481 GB, free: 37.92 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 8.37e-05/0.002805, allocations: 40.75 kB / 0.6481 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 7.554e-06/0.002813, allocations: 192 / 0.6481 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 8.256e-06/0.002821, allocations: 384 / 0.6481 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 7.604e-06/0.002829, allocations: 384 / 0.6481 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 2.022e-05/0.002849, allocations: 10.03 kB / 0.6481 GB, free: 37.88 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0001169/0.002966, allocations: 118.4 kB / 0.6482 GB, free: 37.74 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002944/0.00326, allocations: 71.48 kB / 0.6483 GB, free: 37.7 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 2.205e-05/0.003282, allocations: 15.39 kB / 0.6483 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 7.574e-06/0.00329, allocations: 5.312 kB / 0.6483 GB, free: 37.68 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 1.801e-05/0.003308, allocations: 35.17 kB / 0.6484 GB, free: 37.64 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=3): time 1.363e-06/0.003309, allocations: 0 / 0.6484 GB, free: 37.64 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=3): time 0.0001459/0.003455, allocations: 52.89 kB / 0.6484 GB, free: 37.6 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 1.357e-05/0.003469, allocations: 53.44 kB / 0.6485 GB, free: 37.54 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 5.125e-05/0.00352, allocations: 163.5 kB / 0.6486 GB, free: 37.37 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 6.753e-06/0.003527, allocations: 25.7 kB / 0.6486 GB, free: 37.34 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 1.865e-05/0.003545, allocations: 132.1 kB / 0.6488 GB, free: 37.21 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 2.591e-05/0.003571, allocations: 17.28 kB / 0.6488 GB, free: 37.2 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 3.043e-05/0.003602, allocations: 23.62 kB / 0.6488 GB, free: 37.17 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 4.521e-05/0.003647, allocations: 499.1 kB / 0.6493 GB, free: 36.67 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 1.681e-05/0.003664, allocations: 6.938 kB / 0.6493 GB, free: 36.67 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 1.481e-05/0.003678, allocations: 15.94 kB / 0.6493 GB, free: 36.66 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 6.678e-05/0.003745, allocations: 31.33 kB / 0.6493 GB, free: 36.65 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.054e-06/0.003747, allocations: 1.438 kB / 0.6493 GB, free: 36.65 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=6) (initialization): time 8.493e-05/0.003832, allocations: 61 kB / 0.6494 GB, free: 36.61 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 1.211e-05/0.003844, allocations: 3.594 kB / 0.6494 GB, free: 36.61 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 5.039e-06/0.003849, allocations: 2.281 kB / 0.6494 GB, free: 36.61 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.377e-05/0.003863, allocations: 1.25 kB / 0.6494 GB, free: 36.61 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 5.828e-05/0.003921, allocations: 14.47 kB / 0.6494 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 8.245e-06/0.00393, allocations: 0 / 0.6494 GB, free: 36.6 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 1.892e-05/0.003949, allocations: 11.16 kB / 0.6494 GB, free: 36.59 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 7.123e-06/0.003956, allocations: 4 kB / 0.6494 GB, free: 36.59 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 3 variables:
         V:VARIABLE(start = 10.0 fixed = true )  \"count of viral particles\" type: Real
         I:VARIABLE(start = 0.0 fixed = true )  \"count of infectious cells\" type: Real
         T:VARIABLE(start = 1e6 fixed = true )  \"count of target(susceptible) cells\" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 1
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (6):
 * Single equations (assignments): 6
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 9.207e-05/0.004048, allocations: 157.7 kB / 0.6496 GB, free: 36.43 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 1.149e-05/0.004059, allocations: 7.391 kB / 0.6496 GB, free: 36.43 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 2.433e-05/0.004084, allocations: 10.09 kB / 0.6496 GB, free: 36.42 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 2.284e-06/0.004086, allocations: 0 / 0.6496 GB, free: 36.42 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.292e-06/0.004087, allocations: 0 / 0.6496 GB, free: 36.42 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 7.535e-06/0.004095, allocations: 6.828 kB / 0.6496 GB, free: 36.41 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 1.838e-05/0.004113, allocations: 7.25 kB / 0.6496 GB, free: 36.41 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 2.017e-05/0.004133, allocations: 0 / 0.6496 GB, free: 36.41 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 1.717e-05/0.00415, allocations: 6.984 kB / 0.6496 GB, free: 36.41 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0001962/0.004347, allocations: 187.1 kB / 0.6498 GB, free: 36.25 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0001361/0.004483, allocations: 334.2 kB / 0.6501 GB, free: 35.94 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 2.669e-05/0.004509, allocations: 13.05 kB / 0.6501 GB, free: 35.93 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 1.952e-05/0.004529, allocations: 126.6 kB / 0.6502 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of Backend: time 3.61e-07/0.004529, allocations: 1.25 kB / 0.6503 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0003368/0.004866, allocations: 103.3 kB / 0.6503 GB, free: 35.72 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.0003097/0.005176, allocations: 0.8128 MB / 0.6511 GB, free: 34.89 MB / 0.5262 GB
Notification: Performance of Templates: time 0.002337/0.007513, allocations: 0.493 MB / 0.6516 GB, free: 34.84 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1 -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.ViralInfectionDynamics1.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.721759766107425]