Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001386/0.001386, allocations: 91.55 kB / 20.19 MB, free: 4.348 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001537/0.001537, allocations: 169 kB / 23.5 MB, free: 1.043 MB / 18.57 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 0.891/0.891, allocations: 177.1 MB / 203.8 MB, free: 5.625 MB / 186.7 MB
"
[Timeout remaining time 179]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo", uses=false) [Timeout 180]
"[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/Examples/package.order:0:0-0:0:readonly] Warning: The package.order file does not list all .mo files and directories (containing package.mo) present in its directory.
Missing names are:
	Paracetamol_Experiment
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo): time 1.599/1.599, allocations: 273.5 MB / 0.5213 GB, free: 14.88 MB / 458.7 MB
"
[Timeout remaining time 178]
Using package Pharmacolibrary with version 25.09 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Pharmacolibrary 25.9.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab")
translateModel(Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab,tolerance=1e-06,outputFormat="empty",numberOfIntervals=5000,variableFilter="",fileNamePrefix="Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab") [Timeout 660]
"Notification: Performance of FrontEnd - loaded program: time 1.723e-06/1.723e-06, allocations: 0 / 0.647 GB, free: 38.76 MB / 0.5262 GB
Notification: Performance of FrontEnd - Absyn->SCode: time 1.666e-05/1.838e-05, allocations: 3.781 kB / 0.647 GB, free: 38.76 MB / 0.5262 GB
Notification: Performance of NFInst.instantiate(Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab): time 0.005925/0.005943, allocations: 2.906 MB / 0.6498 GB, free: 36.88 MB / 0.5262 GB
Notification: Performance of NFInst.instExpressions: time 0.0008897/0.006833, allocations: 0.7157 MB / 0.6505 GB, free: 36.4 MB / 0.5262 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001085/0.006942, allocations: 5.375 kB / 0.6505 GB, free: 36.4 MB / 0.5262 GB
Notification: Performance of NFTyping.typeComponents: time 7.422e-05/0.007016, allocations: 43.58 kB / 0.6506 GB, free: 36.37 MB / 0.5262 GB
Notification: Performance of NFTyping.typeBindings: time 0.0002717/0.007288, allocations: 133.4 kB / 0.6507 GB, free: 36.32 MB / 0.5262 GB
Notification: Performance of NFTyping.typeClassSections: time 0.0002009/0.007489, allocations: 83.09 kB / 0.6508 GB, free: 36.27 MB / 0.5262 GB
Notification: Performance of NFFlatten.flatten: time 0.003356/0.01084, allocations: 445.8 kB / 0.6512 GB, free: 36.04 MB / 0.5262 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.0001696/0.01101, allocations: 83.88 kB / 0.6513 GB, free: 36 MB / 0.5262 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.0002273/0.01124, allocations: 235.7 kB / 0.6515 GB, free: 35.91 MB / 0.5262 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.000179/0.01142, allocations: 138.7 kB / 0.6516 GB, free: 35.86 MB / 0.5262 GB
Notification: Performance of NFPackage.collectConstants: time 4.554e-05/0.01147, allocations: 33.41 kB / 0.6517 GB, free: 35.86 MB / 0.5262 GB
Notification: Performance of NFFlatten.collectFunctions: time 4.607e-05/0.01151, allocations: 38.62 kB / 0.6517 GB, free: 35.86 MB / 0.5262 GB
Notification: Performance of NFScalarize.scalarize: time 4.755e-05/0.01156, allocations: 77.09 kB / 0.6518 GB, free: 35.8 MB / 0.5262 GB
Notification: Performance of NFVerifyModel.verify: time 0.0001303/0.01169, allocations: 139.6 kB / 0.6519 GB, free: 35.75 MB / 0.5262 GB
Notification: Performance of NFConvertDAE.convert: time 0.0002722/0.01196, allocations: 264.4 kB / 0.6522 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of FrontEnd - DAE generated: time 2.084e-06/0.01196, allocations: 5.375 kB / 0.6522 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of FrontEnd: time 8.92e-07/0.01196, allocations: 0 / 0.6522 GB, free: 35.62 MB / 0.5262 GB
Notification: Performance of Transformations before backend: time 5.35e-06/0.01197, allocations: 0 / 0.6522 GB, free: 35.62 MB / 0.5262 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 67
 * Number of variables: 67
Notification: Performance of Generate backend data structure: time 0.0007701/0.01274, allocations: 0.7655 MB / 0.6529 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of prepare preOptimizeDAE: time 3.78e-05/0.01278, allocations: 8.125 kB / 0.6529 GB, free: 34.96 MB / 0.5262 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 9.545e-05/0.01287, allocations: 61.36 kB / 0.653 GB, free: 34.93 MB / 0.5262 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001353/0.01301, allocations: 191.8 kB / 0.6532 GB, free: 34.75 MB / 0.5262 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 2.275e-05/0.01303, allocations: 26.78 kB / 0.6532 GB, free: 34.74 MB / 0.5262 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 4.895e-05/0.01308, allocations: 33.38 kB / 0.6532 GB, free: 34.73 MB / 0.5262 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0003507/0.01343, allocations: 298.5 kB / 0.6535 GB, free: 34.55 MB / 0.5262 GB
Notification: Performance of preOpt findStateOrder (simulation): time 1.857e-05/0.01345, allocations: 11.34 kB / 0.6535 GB, free: 34.54 MB / 0.5262 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 2.226e-05/0.01347, allocations: 10.22 kB / 0.6535 GB, free: 34.53 MB / 0.5262 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.12e-05/0.01348, allocations: 8.094 kB / 0.6535 GB, free: 34.53 MB / 0.5262 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002173/0.01566, allocations: 229.5 kB / 0.6538 GB, free: 34.42 MB / 0.5262 GB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.0007767/0.01643, allocations: 0.6937 MB / 0.6544 GB, free: 33.95 MB / 0.5262 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.0002989/0.01673, allocations: 235.5 kB / 0.6547 GB, free: 33.8 MB / 0.5262 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0001272/0.01686, allocations: 153.9 kB / 0.6548 GB, free: 33.68 MB / 0.5262 GB
Notification: Performance of preOpt evalFunc (simulation): time 1.457e-05/0.01687, allocations: 5.875 kB / 0.6548 GB, free: 33.68 MB / 0.5262 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0002671/0.01714, allocations: 449 kB / 0.6552 GB, free: 33.3 MB / 0.5262 GB
Notification: Performance of pre-optimization done (n=42): time 2.124e-06/0.01714, allocations: 0 / 0.6552 GB, free: 33.3 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=45): time 0.001529/0.01867, allocations: 1.258 MB / 0.6565 GB, free: 32.44 MB / 0.5262 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 7.683e-05/0.01875, allocations: 299.7 kB / 0.6568 GB, free: 32.09 MB / 0.5262 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.000223/0.01897, allocations: 284.6 kB / 0.657 GB, free: 31.9 MB / 0.5262 GB
Notification: Performance of collectPreVariables (initialization): time 2.91e-05/0.019, allocations: 39.86 kB / 0.6571 GB, free: 31.86 MB / 0.5262 GB
Notification: Performance of collectInitialEqns (initialization): time 7.768e-05/0.01908, allocations: 219.5 kB / 0.6573 GB, free: 31.66 MB / 0.5262 GB
Notification: Performance of collectInitialBindings (initialization): time 6.622e-05/0.01914, allocations: 148.7 kB / 0.6574 GB, free: 31.55 MB / 0.5262 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 8.946e-05/0.01923, allocations: 84.27 kB / 0.6575 GB, free: 31.49 MB / 0.5262 GB
Notification: Performance of setup shared object (initialization): time 6.966e-05/0.0193, allocations: 0.5162 MB / 0.658 GB, free: 30.98 MB / 0.5262 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000149/0.01945, allocations: 198.6 kB / 0.6582 GB, free: 30.83 MB / 0.5262 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0001944/0.01965, allocations: 347.2 kB / 0.6585 GB, free: 30.48 MB / 0.5262 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0004065/0.02005, allocations: 0.6606 MB / 0.6592 GB, free: 29.89 MB / 0.5262 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 2.175e-06/0.02006, allocations: 0 / 0.6592 GB, free: 29.89 MB / 0.5262 GB
Notification: Performance of matching and sorting (n=66) (initialization): time 0.0004926/0.02055, allocations: 0.5977 MB / 0.6597 GB, free: 29.5 MB / 0.5262 GB
Notification: Performance of prepare postOptimizeDAE: time 3.934e-05/0.02059, allocations: 119.9 kB / 0.6599 GB, free: 29.37 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 7.033e-06/0.02059, allocations: 6.719 kB / 0.6599 GB, free: 29.36 MB / 0.5262 GB
Notification: Performance of postOpt tearingSystem (initialization): time 1.755e-05/0.02061, allocations: 9.078 kB / 0.6599 GB, free: 29.36 MB / 0.5262 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0002454/0.02086, allocations: 105 kB / 0.66 GB, free: 29.35 MB / 0.5262 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.364e-05/0.02087, allocations: 9.172 kB / 0.66 GB, free: 29.35 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0001161/0.02099, allocations: 18.5 kB / 0.66 GB, free: 29.35 MB / 0.5262 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.792e-05/0.02102, allocations: 24.72 kB / 0.66 GB, free: 29.34 MB / 0.5262 GB
Warning: Assuming fixed start value for the following 14 variables:
         IMDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         IMDose.variableDose.TotalCumulativeMass:VARIABLE(min = -1e-12 unit = \"kg\" fixed = true )  \"Total dose adminitrated by this source\" type: Real
         mascularTissue.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         blood.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         peripheralTissueCompartment.tCompartment.AUC:VARIABLE(unit = \"kg.s/m3\" fixed = true )  \"area under curve\" type: Real
         peripheralTissueCompartment.tCompartment.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheralTissueCompartment.tCompartment.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         blood.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         blood.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         mascularTissue.Cmin:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         mascularTissue.Cmax:DISCRETE(min = -1e-9 unit = \"kg/m3\" fixed = true )  type: Real
         peripheralTissueCompartment.tCompartment.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         blood.rising:DISCRETE(fixed = true protected = true )  type: Boolean
         mascularTissue.rising:DISCRETE(fixed = true protected = true )  type: Boolean
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 13
 * Number of states: 0 ()
 * Number of discrete variables: 29 ($PRE.peripheralTissueCompartment.tCompartment.Cmin,peripheralTissueCompartment.tCompartment.Cmin,$PRE.peripheralTissueCompartment.tCompartment.Cmax,peripheralTissueCompartment.tCompartment.Cmax,$PRE.blood.Cmin,blood.Cmin,$PRE.blood.Cmax,blood.Cmax,$PRE.mascularTissue.Cmin,mascularTissue.Cmin,$PRE.mascularTissue.Cmax,mascularTissue.Cmax,$PRE.peripheralTissueCompartment.tCompartment.rising,$PRE.blood.rising,$PRE.mascularTissue.rising,$PRE.IMDose.pulse.count,$PRE.IMDose.pulse.T_start,peripheralTissueCompartment.tCompartment.rising,blood.rising,mascularTissue.rising,IMDose.pulse.count,IMDose.pulse.T_start,$whenCondition6,$whenCondition5,$whenCondition4,$whenCondition3,$whenCondition2,$whenCondition1,$whenCondition7)
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (62):
 * Single equations (assignments): 58
 * Array equations: 0
 * Algorithm blocks: 4
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002189/0.02123, allocations: 347.8 kB / 0.6604 GB, free: 29.03 MB / 0.5262 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.18e-05/0.02129, allocations: 54.56 kB / 0.6604 GB, free: 29.01 MB / 0.5262 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 4.645e-05/0.02133, allocations: 39.53 kB / 0.6604 GB, free: 28.98 MB / 0.5262 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.272e-06/0.02134, allocations: 3.75 kB / 0.6605 GB, free: 28.98 MB / 0.5262 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.094e-06/0.02134, allocations: 0 / 0.6605 GB, free: 28.98 MB / 0.5262 GB
Notification: Performance of postOpt removeConstants (simulation): time 3.021e-05/0.02137, allocations: 24.19 kB / 0.6605 GB, free: 28.97 MB / 0.5262 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.438e-05/0.02142, allocations: 19.97 kB / 0.6605 GB, free: 28.96 MB / 0.5262 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 7.924e-05/0.02149, allocations: 13.78 kB / 0.6605 GB, free: 28.96 MB / 0.5262 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 9.326e-05/0.02159, allocations: 38.92 kB / 0.6605 GB, free: 28.95 MB / 0.5262 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0006281/0.02222, allocations: 0.6466 MB / 0.6612 GB, free: 28.53 MB / 0.5262 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0006195/0.02284, allocations: 0.9612 MB / 0.6621 GB, free: 27.83 MB / 0.5262 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0001621/0.023, allocations: 202.9 kB / 0.6623 GB, free: 27.7 MB / 0.5262 GB
Notification: Performance of sorting global known variables: time 9.746e-05/0.0231, allocations: 200.9 kB / 0.6625 GB, free: 27.56 MB / 0.5262 GB
Notification: Performance of Backend: time 7.22e-07/0.0231, allocations: 0.5312 kB / 0.6625 GB, free: 27.56 MB / 0.5262 GB
Notification: Performance of simCode: created initialization part: time 0.0005289/0.02362, allocations: 0.592 MB / 0.6631 GB, free: 27.06 MB / 0.5262 GB
Notification: Performance of SimCode: time 0.001725/0.02535, allocations: 1.727 MB / 0.6648 GB, free: 25.61 MB / 0.5262 GB
Notification: Performance of Templates: time 0.006897/0.03225, allocations: 5.112 MB / 0.6698 GB, free: 25.19 MB / 0.5262 GB
"
[Timeout remaining time 660]
make -j1 -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab.makefile [Timeout 660]
(rm -f Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab.pipe ; mkfifo Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab.pipe ; head -c 1048576 < Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab.pipe >> ../files/Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab.sim & ./Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab -abortSlowSimulation -alarm=240  -lv LOG_STATS > Pharmacolibrary_Pharmacolibrary.DevModels.Palivizumab.PKTwoCompartmentPalivizumab.pipe 2>&1) [Timeout 240]
[Calling sys.exit(0), Time elapsed: 4.732073591789231]