Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001309/0.001309, allocations: 96.2 kB / 19.7 MB, free: 2.129 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00139/0.00139, allocations: 211.5 kB / 23 MB, free: 4.934 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.477/1.477, allocations: 230.6 MB / 256.8 MB, free: 7.801 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1554/0.1554, allocations: 23.91 MB / 337.1 MB, free: 10.93 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002119/0.002119, allocations: 71.89 kB / 472.5 MB, free: 6.922 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3163/0.3184, allocations: 59.88 MB / 0.5199 GB, free: 9.781 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO): time 0.09253/0.411, allocations: 42.85 MB / 0.5617 GB, free: 14.13 MB / 414.1 MB
Notification: Performance of NFInst.instExpressions: time 0.1082/0.5192, allocations: 76.43 MB / 0.6364 GB, free: 2.219 MB / 478.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.005292/0.5245, allocations: 95.25 kB / 0.6364 GB, free: 2.125 MB / 478.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.006168/0.5307, allocations: 1.752 MB / 0.6382 GB, free: 368 kB / 478.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.02199/0.5526, allocations: 7.084 MB / 0.6451 GB, free: 9.227 MB / 494.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.03285/0.5855, allocations: 12.42 MB / 0.6572 GB, free: 12.74 MB / 0.4981 GB
Notification: Performance of NFFlatten.flatten: time 0.03422/0.6197, allocations: 31 MB / 0.6875 GB, free: 13.64 MB / 0.5294 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.02587/0.6456, allocations: 19.02 MB / 0.706 GB, free: 10.49 MB / 0.545 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.03354/0.6791, allocations: 20.64 MB / 0.7262 GB, free: 5.816 MB / 0.5606 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.4972/1.176, allocations: 19.51 MB / 0.7452 GB, free: 41.39 MB / 0.5607 GB
Notification: Performance of NFPackage.collectConstants: time 0.01453/1.191, allocations: 3.637 MB / 0.7488 GB, free: 41.39 MB / 0.5607 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.04026/1.231, allocations: 12.47 MB / 0.761 GB, free: 41.39 MB / 0.5607 GB
Notification: Performance of NFScalarize.scalarize: time 0.01728/1.248, allocations: 8.238 MB / 0.769 GB, free: 41.39 MB / 0.5607 GB
Notification: Performance of NFVerifyModel.verify: time 0.02441/1.273, allocations: 12.2 MB / 0.7809 GB, free: 40.89 MB / 0.5607 GB
Notification: Performance of NFConvertDAE.convert: time 0.06977/1.343, allocations: 52.38 MB / 0.8321 GB, free: 16.73 MB / 0.5607 GB
Notification: Performance of FrontEnd - DAE generated: time 7.114e-06/1.343, allocations: 0 / 0.8321 GB, free: 16.73 MB / 0.5607 GB
Notification: Performance of FrontEnd: time 1.673e-06/1.343, allocations: 0 / 0.8321 GB, free: 16.73 MB / 0.5607 GB
Notification: Performance of Transformations before backend: time 0.001288/1.344, allocations: 0 / 0.8321 GB, free: 16.73 MB / 0.5607 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 4405
 * Number of variables: 4405
Notification: Performance of Generate backend data structure: time 0.09208/1.436, allocations: 27.61 MB / 0.8591 GB, free: 11.83 MB / 0.5763 GB
Notification: Performance of prepare preOptimizeDAE: time 5.099e-05/1.436, allocations: 8.031 kB / 0.8591 GB, free: 11.82 MB / 0.5763 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.03115/1.467, allocations: 4.61 MB / 0.8636 GB, free: 7.211 MB / 0.5763 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.04166/1.509, allocations: 14.69 MB / 0.8779 GB, free: 9.062 MB / 0.5919 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.003628/1.512, allocations: 3.681 MB / 0.8815 GB, free: 4.84 MB / 0.5919 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.01513/1.528, allocations: 1.774 MB / 0.8832 GB, free: 3.07 MB / 0.5919 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.1059/1.633, allocations: 40.99 MB / 0.9233 GB, free: 9.828 MB / 0.6388 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0006086/1.634, allocations: 17.56 kB / 0.9233 GB, free: 9.82 MB / 0.6388 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.009746/1.644, allocations: 0.6758 MB / 0.9239 GB, free: 9.145 MB / 0.6388 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003827/1.644, allocations: 416 kB / 0.9243 GB, free: 8.738 MB / 0.6388 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.1181/1.762, allocations: 55.23 MB / 0.9783 GB, free: 1.523 MB / 0.6857 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.595/2.357, allocations: 135.7 MB / 1.111 GB, free: 99.35 MB / 0.6857 GB
Notification: Performance of preOpt comSubExp (simulation): time 1.066/3.423, allocations: 284.3 MB / 1.388 GB, free: 184.5 MB / 0.7169 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.03546/3.459, allocations: 21.51 MB / 1.409 GB, free: 162.9 MB / 0.7169 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.1689/3.628, allocations: 88.95 MB / 1.496 GB, free: 75.52 MB / 0.7169 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 9.553e-05/3.628, allocations: 154.2 kB / 1.496 GB, free: 75.36 MB / 0.7169 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.03406/3.662, allocations: 7.351 MB / 1.504 GB, free: 68.63 MB / 0.7169 GB
Notification: Performance of pre-optimization done (n=1160): time 5.231e-05/3.662, allocations: 0 / 1.504 GB, free: 68.63 MB / 0.7169 GB
Notification: Performance of matching and sorting (n=1312): time 1.027/4.689, allocations: 149.4 MB / 1.649 GB, free: 225.3 MB / 0.7169 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001344/4.689, allocations: 185.6 kB / 1.65 GB, free: 225.2 MB / 0.7169 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.01769/4.707, allocations: 11.49 MB / 1.661 GB, free: 219.3 MB / 0.7169 GB
Notification: Performance of collectPreVariables (initialization): time 0.004974/4.712, allocations: 243.8 kB / 1.661 GB, free: 219.1 MB / 0.7169 GB
Notification: Performance of collectInitialEqns (initialization): time 0.005181/4.717, allocations: 8.246 MB / 1.669 GB, free: 211.6 MB / 0.7169 GB
Notification: Performance of collectInitialBindings (initialization): time 0.008608/4.725, allocations: 4.774 MB / 1.674 GB, free: 206.9 MB / 0.7169 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0169/4.742, allocations: 3.808 MB / 1.678 GB, free: 203.1 MB / 0.7169 GB
Notification: Performance of setup shared object (initialization): time 4.757e-05/4.742, allocations: 305.1 kB / 1.678 GB, free: 202.8 MB / 0.7169 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.02167/4.764, allocations: 13.88 MB / 1.691 GB, free: 188.9 MB / 0.7169 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.02477/4.789, allocations: 19.35 MB / 1.71 GB, free: 167.1 MB / 0.7169 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.05138/4.84, allocations: 34.72 MB / 1.744 GB, free: 130 MB / 0.7169 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.000194/4.84, allocations: 48 kB / 1.744 GB, free: 129.9 MB / 0.7169 GB
Notification: Performance of matching and sorting (n=2196) (initialization): time 0.4997/5.34, allocations: 93.08 MB / 1.835 GB, free: 36.71 MB / 0.7169 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002389/5.34, allocations: 76 kB / 1.835 GB, free: 36.64 MB / 0.7169 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0002804/5.341, allocations: 176.2 kB / 1.835 GB, free: 36.46 MB / 0.7169 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.3311/5.672, allocations: 25.92 MB / 1.861 GB, free: 235.8 MB / 0.7169 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.02091/5.693, allocations: 4.331 MB / 1.865 GB, free: 235.7 MB / 0.7169 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2343/5.927, allocations: 107.2 MB / 1.97 GB, free: 196.5 MB / 0.7169 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.02312/5.95, allocations: 0.9821 MB / 1.971 GB, free: 195.5 MB / 0.7169 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.006448/5.956, allocations: 1.092 MB / 1.972 GB, free: 194.4 MB / 0.7169 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 782
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (2138):
 * Single equations (assignments): 2135
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 3
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (41,12,73.3%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.01884/5.975, allocations: 6.203 MB / 1.978 GB, free: 188.3 MB / 0.7169 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.008006/5.983, allocations: 1.234 MB / 1.979 GB, free: 187.8 MB / 0.7169 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.3343/6.318, allocations: 57.35 MB / 2.035 GB, free: 131.4 MB / 0.7169 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0007093/6.318, allocations: 71.67 kB / 2.035 GB, free: 131.3 MB / 0.7169 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.987e-05/6.318, allocations: 7.328 kB / 2.035 GB, free: 131.3 MB / 0.7169 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.01623/6.335, allocations: 3.989 MB / 2.039 GB, free: 127.9 MB / 0.7169 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.006819/6.341, allocations: 335.9 kB / 2.039 GB, free: 127.5 MB / 0.7169 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01563/6.357, allocations: 0.6282 MB / 2.04 GB, free: 126.9 MB / 0.7169 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01618/6.373, allocations: 4.3 MB / 2.044 GB, free: 122.6 MB / 0.7169 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.07428/6.447, allocations: 30.23 MB / 2.074 GB, free: 92.61 MB / 0.7169 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.07136/6.519, allocations: 45.05 MB / 2.118 GB, free: 47.48 MB / 0.7169 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.01762/6.536, allocations: 12.43 MB / 2.13 GB, free: 35.04 MB / 0.7169 GB
Notification: Performance of sorting global known variables: time 0.01237/6.549, allocations: 7.665 MB / 2.137 GB, free: 27.41 MB / 0.7169 GB
Notification: Performance of Backend: time 3.11e-07/6.549, allocations: 0 / 2.137 GB, free: 27.41 MB / 0.7169 GB
Notification: Performance of simCode: created initialization part: time 0.3085/6.857, allocations: 24.96 MB / 2.162 GB, free: 259.2 MB / 0.7169 GB
Notification: Performance of SimCode: time 0.06182/6.919, allocations: 34.95 MB / 2.196 GB, free: 248.2 MB / 0.7169 GB
Notification: Performance of Templates: time 0.7517/7.671, allocations: 427.5 MB / 2.613 GB, free: 168.8 MB / 0.7169 GB
"
[Timeout remaining time 652]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe 2>&1) [Timeout 480]
[Calling os._exit(0), Time elapsed: 45.09019964700565]
Failed to read output from testmodel.py, exit status != 0:
7.680159962008474 7.690246862 6.345143151
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f10030baf50>