Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001343/0.001343, allocations: 109.1 kB / 19.71 MB, free: 2.145 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001575/0.001575, allocations: 214.5 kB / 23 MB, free: 4.969 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.449/1.449, allocations: 230.6 MB / 256.8 MB, free: 7.816 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.185/0.185, allocations: 23.92 MB / 337.1 MB, free: 10.94 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002093/0.002093, allocations: 75.88 kB / 472.5 MB, free: 6.941 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.304/0.3061, allocations: 59.88 MB / 0.5199 GB, free: 9.828 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery): time 0.08943/0.3955, allocations: 39.9 MB / 0.5588 GB, free: 0.8281 MB / 398.1 MB
Notification: Performance of NFInst.instExpressions: time 0.08767/0.4832, allocations: 64.1 MB / 0.6214 GB, free: 1.539 MB / 462.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.006465/0.4896, allocations: 83.31 kB / 0.6215 GB, free: 1.457 MB / 462.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.005449/0.4951, allocations: 1.477 MB / 0.623 GB, free: 15.97 MB / 478.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.01861/0.5137, allocations: 5.994 MB / 0.6288 GB, free: 9.934 MB / 478.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.02757/0.5412, allocations: 10.4 MB / 0.639 GB, free: 15.48 MB / 494.1 MB
Notification: Performance of NFFlatten.flatten: time 0.03015/0.5714, allocations: 26.68 MB / 0.665 GB, free: 4.715 MB / 0.4981 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.02228/0.5937, allocations: 16.27 MB / 0.6809 GB, free: 4.328 MB / 0.5137 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.02786/0.6215, allocations: 17.82 MB / 0.6983 GB, free: 2.473 MB / 0.5294 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.03038/0.6519, allocations: 16.73 MB / 0.7146 GB, free: 1.695 MB / 0.545 GB
Notification: Performance of NFPackage.collectConstants: time 0.01106/0.663, allocations: 3.129 MB / 0.7177 GB, free: 14.56 MB / 0.5606 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.03312/0.6961, allocations: 10.53 MB / 0.728 GB, free: 4.02 MB / 0.5606 GB
Notification: Performance of NFScalarize.scalarize: time 0.4812/1.177, allocations: 7.065 MB / 0.7349 GB, free: 51.33 MB / 0.5607 GB
Notification: Performance of NFVerifyModel.verify: time 0.03329/1.211, allocations: 10.51 MB / 0.7451 GB, free: 51.33 MB / 0.5607 GB
Notification: Performance of NFConvertDAE.convert: time 0.07567/1.286, allocations: 44.92 MB / 0.789 GB, free: 47.3 MB / 0.5607 GB
Notification: Performance of FrontEnd - DAE generated: time 7.674e-06/1.286, allocations: 0 / 0.789 GB, free: 47.3 MB / 0.5607 GB
Notification: Performance of FrontEnd: time 2.064e-06/1.286, allocations: 0 / 0.789 GB, free: 47.3 MB / 0.5607 GB
Notification: Performance of Transformations before backend: time 0.001114/1.287, allocations: 0 / 0.789 GB, free: 47.3 MB / 0.5607 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3808
 * Number of variables: 3808
Notification: Performance of Generate backend data structure: time 0.09011/1.377, allocations: 23.65 MB / 0.8121 GB, free: 34.64 MB / 0.5607 GB
Notification: Performance of prepare preOptimizeDAE: time 4.452e-05/1.377, allocations: 7.625 kB / 0.8121 GB, free: 34.64 MB / 0.5607 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.02881/1.406, allocations: 3.978 MB / 0.816 GB, free: 32.86 MB / 0.5607 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.03594/1.442, allocations: 12.63 MB / 0.8283 GB, free: 26.27 MB / 0.5607 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.002208/1.444, allocations: 3.067 MB / 0.8313 GB, free: 23.44 MB / 0.5607 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.01125/1.456, allocations: 1.533 MB / 0.8328 GB, free: 22.89 MB / 0.5607 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.08517/1.541, allocations: 35.25 MB / 0.8673 GB, free: 11.94 MB / 0.5763 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.000645/1.541, allocations: 18.44 kB / 0.8673 GB, free: 11.93 MB / 0.5763 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.009741/1.551, allocations: 0.5872 MB / 0.8679 GB, free: 11.35 MB / 0.5763 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003599/1.552, allocations: 360 kB / 0.8682 GB, free: 11 MB / 0.5763 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.1084/1.66, allocations: 47.46 MB / 0.9145 GB, free: 11.54 MB / 0.6232 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.5522/2.212, allocations: 116.6 MB / 1.028 GB, free: 190.3 MB / 0.67 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.5696/2.782, allocations: 218.4 MB / 1.242 GB, free: 17.34 MB / 0.67 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.3103/3.092, allocations: 18.49 MB / 1.26 GB, free: 231.4 MB / 0.67 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.1641/3.256, allocations: 76.48 MB / 1.334 GB, free: 203.1 MB / 0.67 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 9.33e-05/3.256, allocations: 131.4 kB / 1.335 GB, free: 202.9 MB / 0.67 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.02975/3.286, allocations: 6.278 MB / 1.341 GB, free: 199.9 MB / 0.67 GB
Notification: Performance of pre-optimization done (n=995): time 5.009e-05/3.286, allocations: 0 / 1.341 GB, free: 199.9 MB / 0.67 GB
Notification: Performance of matching and sorting (n=1129): time 0.6794/3.966, allocations: 130.5 MB / 1.468 GB, free: 70.99 MB / 0.67 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 9.772e-05/3.966, allocations: 168.2 kB / 1.468 GB, free: 70.81 MB / 0.67 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0164/3.982, allocations: 9.742 MB / 1.478 GB, free: 61.1 MB / 0.67 GB
Notification: Performance of collectPreVariables (initialization): time 0.004497/3.987, allocations: 217.7 kB / 1.478 GB, free: 60.88 MB / 0.67 GB
Notification: Performance of collectInitialEqns (initialization): time 0.005009/3.992, allocations: 7.089 MB / 1.485 GB, free: 53.79 MB / 0.67 GB
Notification: Performance of collectInitialBindings (initialization): time 0.007977/3.999, allocations: 4.096 MB / 1.489 GB, free: 49.75 MB / 0.67 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.01621/4.016, allocations: 3.273 MB / 1.492 GB, free: 46.46 MB / 0.67 GB
Notification: Performance of setup shared object (initialization): time 4.159e-05/4.016, allocations: 305.1 kB / 1.492 GB, free: 46.16 MB / 0.67 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.02017/4.036, allocations: 11.84 MB / 1.504 GB, free: 34.3 MB / 0.67 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.02329/4.059, allocations: 16.57 MB / 1.52 GB, free: 15.66 MB / 0.67 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.3133/4.373, allocations: 29.75 MB / 1.549 GB, free: 201 MB / 0.67 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0001744/4.373, allocations: 42.19 kB / 1.549 GB, free: 201 MB / 0.67 GB
Notification: Performance of matching and sorting (n=1889) (initialization): time 0.4454/4.818, allocations: 81.39 MB / 1.629 GB, free: 164.2 MB / 0.67 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0002208/4.818, allocations: 68.77 kB / 1.629 GB, free: 164.1 MB / 0.67 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.000284/4.819, allocations: 148 kB / 1.629 GB, free: 163.9 MB / 0.67 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.05993/4.879, allocations: 22.4 MB / 1.651 GB, free: 141.7 MB / 0.67 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01793/4.896, allocations: 3.725 MB / 1.654 GB, free: 138 MB / 0.67 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.1912/5.088, allocations: 92.36 MB / 1.745 GB, free: 45.43 MB / 0.67 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01873/5.106, allocations: 0.8341 MB / 1.745 GB, free: 44.59 MB / 0.67 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.00486/5.111, allocations: 0.9289 MB / 1.746 GB, free: 43.66 MB / 0.67 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 677
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (1841):
 * Single equations (assignments): 1838
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 3
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0146/5.126, allocations: 5.38 MB / 1.752 GB, free: 38.36 MB / 0.67 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0058/5.132, allocations: 1.061 MB / 1.753 GB, free: 37.89 MB / 0.67 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.5287/5.66, allocations: 48.43 MB / 1.8 GB, free: 195 MB / 0.67 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0004923/5.661, allocations: 60.92 kB / 1.8 GB, free: 195 MB / 0.67 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.437e-05/5.661, allocations: 1.281 kB / 1.8 GB, free: 195 MB / 0.67 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.01338/5.674, allocations: 3.381 MB / 1.803 GB, free: 195 MB / 0.67 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.006737/5.681, allocations: 286.1 kB / 1.804 GB, free: 195 MB / 0.67 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01458/5.696, allocations: 0.5368 MB / 1.804 GB, free: 195 MB / 0.67 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01508/5.711, allocations: 3.649 MB / 1.808 GB, free: 195 MB / 0.67 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.07007/5.781, allocations: 25.61 MB / 1.833 GB, free: 190.9 MB / 0.67 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.06666/5.847, allocations: 38.12 MB / 1.87 GB, free: 176.1 MB / 0.67 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.01681/5.864, allocations: 10.54 MB / 1.88 GB, free: 170.1 MB / 0.67 GB
Notification: Performance of sorting global known variables: time 0.01097/5.875, allocations: 6.489 MB / 1.886 GB, free: 164.3 MB / 0.67 GB
Notification: Performance of Backend: time 5.11e-07/5.875, allocations: 0 / 1.886 GB, free: 164.3 MB / 0.67 GB
Notification: Performance of simCode: created initialization part: time 0.06692/5.942, allocations: 21.16 MB / 1.907 GB, free: 144.6 MB / 0.67 GB
Notification: Performance of SimCode: time 0.04921/5.991, allocations: 30.1 MB / 1.937 GB, free: 114.7 MB / 0.67 GB
Notification: Performance of Templates: time 0.6532/6.644, allocations: 362 MB / 2.29 GB, free: 18.74 MB / 0.67 GB
"
[Timeout remaining time 653]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.sim & ./Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 31.2090564359969]
Failed to read output from testmodel.py, exit status != 0:
6.653672963002464 6.662095021 5.373372378
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f7f56b42f50>