Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001831/0.001831, allocations: 107.8 kB / 19.71 MB, free: 2.145 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.00225/0.00225, allocations: 214.7 kB / 23 MB, free: 4.965 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.441/1.441, allocations: 230.6 MB / 256.8 MB, free: 7.809 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1361/0.1361, allocations: 23.92 MB / 337.1 MB, free: 10.95 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics")
translateModel(Chemical.Obsolete.Examples.EnzymeKinetics,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002093/0.002093, allocations: 63.91 kB / 472.4 MB, free: 6.992 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3015/0.3036, allocations: 59.87 MB / 0.5198 GB, free: 9.805 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.EnzymeKinetics): time 0.0747/0.3783, allocations: 26.89 MB / 0.5461 GB, free: 12.75 MB / 398.1 MB
Notification: Performance of NFInst.instExpressions: time 0.02516/0.4034, allocations: 17.17 MB / 0.5629 GB, free: 13.13 MB / 414.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00106/0.4045, allocations: 27.81 kB / 0.5629 GB, free: 13.11 MB / 414.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.001222/0.4057, allocations: 382.3 kB / 0.5633 GB, free: 12.82 MB / 414.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.004719/0.4104, allocations: 1.665 MB / 0.5649 GB, free: 11.41 MB / 414.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.007116/0.4176, allocations: 2.532 MB / 0.5673 GB, free: 9.133 MB / 414.1 MB
Notification: Performance of NFFlatten.flatten: time 0.002687/0.4203, allocations: 1.977 MB / 0.5693 GB, free: 7.148 MB / 414.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001153/0.4214, allocations: 0.9353 MB / 0.5702 GB, free: 6.188 MB / 414.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001162/0.4226, allocations: 1.013 MB / 0.5712 GB, free: 5.172 MB / 414.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001548/0.4241, allocations: 1.141 MB / 0.5723 GB, free: 4.027 MB / 414.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.000285/0.4244, allocations: 175.9 kB / 0.5725 GB, free: 3.855 MB / 414.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.005603/0.43, allocations: 2.094 MB / 0.5745 GB, free: 1.758 MB / 414.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.000473/0.4305, allocations: 438.7 kB / 0.5749 GB, free: 1.328 MB / 414.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.0008975/0.4314, allocations: 0.7354 MB / 0.5756 GB, free: 0.5898 MB / 414.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.006651/0.438, allocations: 4.237 MB / 0.5798 GB, free: 12.34 MB / 430.1 MB
Notification: Performance of FrontEnd - DAE generated: time 3.617e-06/0.438, allocations: 0 / 0.5798 GB, free: 12.34 MB / 430.1 MB
Notification: Performance of FrontEnd: time 1.413e-06/0.438, allocations: 0 / 0.5798 GB, free: 12.34 MB / 430.1 MB
Notification: Performance of Transformations before backend: time 1.859e-05/0.438, allocations: 0 / 0.5798 GB, free: 12.34 MB / 430.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 337
 * Number of variables: 337
Notification: Performance of Generate backend data structure: time 0.004476/0.4425, allocations: 2.155 MB / 0.5819 GB, free: 10.14 MB / 430.1 MB
Notification: Performance of prepare preOptimizeDAE: time 3.875e-05/0.4426, allocations: 8.031 kB / 0.5819 GB, free: 10.13 MB / 430.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001585/0.4441, allocations: 343.5 kB / 0.5822 GB, free: 9.797 MB / 430.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001496/0.4456, allocations: 0.7613 MB / 0.583 GB, free: 9.008 MB / 430.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001994/0.4458, allocations: 218 kB / 0.5832 GB, free: 8.77 MB / 430.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.0002828/0.4461, allocations: 136.3 kB / 0.5833 GB, free: 8.637 MB / 430.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.003046/0.4492, allocations: 1.721 MB / 0.585 GB, free: 6.875 MB / 430.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.832e-05/0.4492, allocations: 0 / 0.585 GB, free: 6.875 MB / 430.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001671/0.4494, allocations: 56 kB / 0.585 GB, free: 6.82 MB / 430.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.876e-05/0.4494, allocations: 32 kB / 0.5851 GB, free: 6.789 MB / 430.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.003725/0.4531, allocations: 2.173 MB / 0.5872 GB, free: 4.609 MB / 430.1 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.009271/0.4624, allocations: 4.425 MB / 0.5915 GB, free: 108 kB / 430.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.005427/0.4678, allocations: 2.708 MB / 0.5942 GB, free: 13.38 MB / 446.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.001258/0.4691, allocations: 0.727 MB / 0.5949 GB, free: 12.65 MB / 446.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.008948/0.478, allocations: 3.782 MB / 0.5986 GB, free: 8.844 MB / 446.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 4.654e-05/0.4781, allocations: 51.55 kB / 0.5986 GB, free: 8.785 MB / 446.1 MB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.0006077/0.4787, allocations: 139.2 kB / 0.5987 GB, free: 8.648 MB / 446.1 MB
Notification: Performance of pre-optimization done (n=97): time 3.557e-06/0.4787, allocations: 0 / 0.5987 GB, free: 8.648 MB / 446.1 MB
Notification: Performance of matching and sorting (n=116): time 0.01975/0.4984, allocations: 4.275 MB / 0.6029 GB, free: 4.34 MB / 446.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.402e-05/0.4985, allocations: 64.41 kB / 0.603 GB, free: 4.266 MB / 446.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0008939/0.4994, allocations: 0.7113 MB / 0.6037 GB, free: 3.543 MB / 446.1 MB
Notification: Performance of collectPreVariables (initialization): time 8.865e-05/0.4995, allocations: 53.7 kB / 0.6037 GB, free: 3.484 MB / 446.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0005019/0.5, allocations: 0.6638 MB / 0.6044 GB, free: 2.812 MB / 446.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003796/0.5003, allocations: 428.4 kB / 0.6048 GB, free: 2.391 MB / 446.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0004493/0.5008, allocations: 295.4 kB / 0.6051 GB, free: 2.094 MB / 446.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001723/0.501, allocations: 353.9 kB / 0.6054 GB, free: 1.742 MB / 446.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0009121/0.5019, allocations: 479.8 kB / 0.6059 GB, free: 1.273 MB / 446.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001339/0.5032, allocations: 0.984 MB / 0.6068 GB, free: 64 kB / 446.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.00245/0.5057, allocations: 1.581 MB / 0.6084 GB, free: 14.24 MB / 462.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 1.046e-05/0.5057, allocations: 8 kB / 0.6084 GB, free: 14.23 MB / 462.1 MB
Notification: Performance of matching and sorting (n=197) (initialization): time 0.006165/0.5118, allocations: 1.987 MB / 0.6103 GB, free: 12.23 MB / 462.1 MB
Notification: Performance of prepare postOptimizeDAE: time 2.44e-05/0.5119, allocations: 12 kB / 0.6103 GB, free: 12.22 MB / 462.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 2.027e-05/0.5119, allocations: 16 kB / 0.6103 GB, free: 12.2 MB / 462.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.003021/0.5149, allocations: 442.8 kB / 0.6108 GB, free: 11.76 MB / 462.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0013/0.5162, allocations: 371.4 kB / 0.6111 GB, free: 11.4 MB / 462.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.006087/0.5223, allocations: 3.602 MB / 0.6146 GB, free: 7.602 MB / 462.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.000983/0.5233, allocations: 55.94 kB / 0.6147 GB, free: 7.547 MB / 462.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001567/0.5234, allocations: 91.95 kB / 0.6148 GB, free: 7.457 MB / 462.1 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 75
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (190):
 * Single equations (assignments): 187
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 1
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Equation system details (not torn):
 * Constant Jacobian (size): 0 systems
 * Linear Jacobian (size,density): 1 system
   {(2,100.0%)}
 * Non-linear Jacobian (size): 0 systems
 * Without analytic Jacobian (size): 0 systems
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0005417/0.524, allocations: 317.3 kB / 0.6151 GB, free: 7.137 MB / 462.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0002395/0.5242, allocations: 107.3 kB / 0.6152 GB, free: 7.031 MB / 462.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.006356/0.5306, allocations: 1.787 MB / 0.6169 GB, free: 5.227 MB / 462.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.502e-05/0.5306, allocations: 7.969 kB / 0.6169 GB, free: 5.219 MB / 462.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 6.693e-06/0.5306, allocations: 3.938 kB / 0.6169 GB, free: 5.215 MB / 462.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0005247/0.5311, allocations: 211.2 kB / 0.6171 GB, free: 5.008 MB / 462.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001558/0.5313, allocations: 23.94 kB / 0.6172 GB, free: 4.984 MB / 462.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0006548/0.5319, allocations: 27.98 kB / 0.6172 GB, free: 4.957 MB / 462.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.000234/0.5322, allocations: 112.8 kB / 0.6173 GB, free: 4.848 MB / 462.1 MB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.004194/0.5364, allocations: 1.449 MB / 0.6187 GB, free: 3.379 MB / 462.1 MB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.003257/0.5396, allocations: 1.978 MB / 0.6206 GB, free: 1.387 MB / 462.1 MB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0008605/0.5405, allocations: 499.7 kB / 0.6211 GB, free: 0.9023 MB / 462.1 MB
Notification: Performance of sorting global known variables: time 0.0005816/0.5411, allocations: 443 kB / 0.6215 GB, free: 480 kB / 462.1 MB
Notification: Performance of Backend: time 4.01e-07/0.5411, allocations: 0 / 0.6215 GB, free: 480 kB / 462.1 MB
Notification: Performance of simCode: created initialization part: time 0.004964/0.546, allocations: 2.252 MB / 0.6237 GB, free: 14.18 MB / 478.1 MB
Notification: Performance of SimCode: time 0.003781/0.5498, allocations: 2.682 MB / 0.6264 GB, free: 11.44 MB / 478.1 MB
Notification: Performance of Templates: time 0.05559/0.6054, allocations: 35.79 MB / 0.6613 GB, free: 7.762 MB / 0.4981 GB
"
[Timeout remaining time 659]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.sim & ./Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.EnzymeKinetics.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 6.160607097990578]
Failed to read output from testmodel.py, exit status != 0:
0.6139592779945815 0.628548689 0.18724478900000002
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7fddf24b6f50>