Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001287/0.001287, allocations: 107.8 kB / 19.71 MB, free: 2.145 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001422/0.001422, allocations: 213 kB / 23 MB, free: 4.969 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.436/1.436, allocations: 230.6 MB / 256.8 MB, free: 7.797 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1339/0.1339, allocations: 23.91 MB / 337.1 MB, free: 10.93 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis,tolerance=1e-08,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis")
translateModel(Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis,tolerance=1e-08,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.00202/0.00202, allocations: 63.91 kB / 472.4 MB, free: 6.949 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.2981/0.3001, allocations: 59.88 MB / 0.5198 GB, free: 9.781 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis): time 0.06855/0.3686, allocations: 26.03 MB / 0.5453 GB, free: 13.51 MB / 398.1 MB
Notification: Performance of NFInst.instExpressions: time 0.02007/0.3887, allocations: 14.71 MB / 0.5596 GB, free: 132 kB / 398.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.000832/0.3895, allocations: 15.88 kB / 0.5596 GB, free: 116 kB / 398.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.000927/0.3905, allocations: 304.7 kB / 0.5599 GB, free: 15.88 MB / 414.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.003977/0.3944, allocations: 1.475 MB / 0.5614 GB, free: 14.64 MB / 414.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005309/0.3998, allocations: 2.018 MB / 0.5634 GB, free: 12.97 MB / 414.1 MB
Notification: Performance of NFFlatten.flatten: time 0.002043/0.4018, allocations: 1.546 MB / 0.5649 GB, free: 11.59 MB / 414.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0008962/0.4027, allocations: 0.7062 MB / 0.5656 GB, free: 10.95 MB / 414.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0008689/0.4036, allocations: 0.7833 MB / 0.5663 GB, free: 10.17 MB / 414.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001146/0.4047, allocations: 0.8605 MB / 0.5672 GB, free: 9.305 MB / 414.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002118/0.4049, allocations: 132 kB / 0.5673 GB, free: 9.176 MB / 414.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004383/0.4093, allocations: 1.743 MB / 0.569 GB, free: 7.43 MB / 414.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.0003383/0.4096, allocations: 339 kB / 0.5693 GB, free: 7.098 MB / 414.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.0006221/0.4103, allocations: 0.5797 MB / 0.5699 GB, free: 6.516 MB / 414.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.005062/0.4153, allocations: 3.443 MB / 0.5732 GB, free: 3.059 MB / 414.1 MB
Notification: Performance of FrontEnd - DAE generated: time 3.336e-06/0.4153, allocations: 0 / 0.5732 GB, free: 3.059 MB / 414.1 MB
Notification: Performance of FrontEnd: time 1.352e-06/0.4153, allocations: 0 / 0.5732 GB, free: 3.059 MB / 414.1 MB
Notification: Performance of Transformations before backend: time 2.061e-05/0.4154, allocations: 0 / 0.5732 GB, free: 3.059 MB / 414.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 276
 * Number of variables: 276
Notification: Performance of Generate backend data structure: time 0.003407/0.4188, allocations: 1.773 MB / 0.575 GB, free: 1.246 MB / 414.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.07e-05/0.4188, allocations: 8.031 kB / 0.575 GB, free: 1.238 MB / 414.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001297/0.4201, allocations: 279.8 kB / 0.5752 GB, free: 0.9648 MB / 414.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001193/0.4213, allocations: 0.6126 MB / 0.5758 GB, free: 336 kB / 414.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001466/0.4214, allocations: 138.1 kB / 0.576 GB, free: 184 kB / 414.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.000222/0.4217, allocations: 116.3 kB / 0.5761 GB, free: 68 kB / 414.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002373/0.424, allocations: 1.337 MB / 0.5774 GB, free: 14.68 MB / 430.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.459e-05/0.4241, allocations: 4 kB / 0.5774 GB, free: 14.68 MB / 430.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001328/0.4242, allocations: 44 kB / 0.5774 GB, free: 14.64 MB / 430.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 3.461e-05/0.4242, allocations: 31.98 kB / 0.5775 GB, free: 14.61 MB / 430.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.002877/0.4271, allocations: 1.675 MB / 0.5791 GB, free: 12.92 MB / 430.1 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006844/0.4339, allocations: 3.382 MB / 0.5824 GB, free: 9.449 MB / 430.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003706/0.4377, allocations: 1.867 MB / 0.5842 GB, free: 7.582 MB / 430.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000915/0.4386, allocations: 0.5377 MB / 0.5848 GB, free: 7.039 MB / 430.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.006467/0.445, allocations: 2.768 MB / 0.5875 GB, free: 4.246 MB / 430.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.757e-05/0.4451, allocations: 51.09 kB / 0.5875 GB, free: 4.188 MB / 430.1 MB
Notification: Performance of pre-optimization done (n=78): time 2.855e-06/0.4451, allocations: 0 / 0.5875 GB, free: 4.188 MB / 430.1 MB
Notification: Performance of matching and sorting (n=95): time 0.01717/0.4622, allocations: 3.429 MB / 0.5909 GB, free: 0.7227 MB / 430.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 4.399e-05/0.4623, allocations: 60.41 kB / 0.5909 GB, free: 0.6523 MB / 430.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007258/0.463, allocations: 0.5701 MB / 0.5915 GB, free: 72 kB / 430.1 MB
Notification: Performance of collectPreVariables (initialization): time 8.23e-05/0.4631, allocations: 41.7 kB / 0.5915 GB, free: 24 kB / 430.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0004594/0.4636, allocations: 0.5546 MB / 0.592 GB, free: 15.46 MB / 446.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003292/0.4639, allocations: 349 kB / 0.5924 GB, free: 15.12 MB / 446.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003793/0.4643, allocations: 234.8 kB / 0.5926 GB, free: 14.88 MB / 446.1 MB
Notification: Performance of setup shared object (initialization): time 0.0002119/0.4645, allocations: 394.7 kB / 0.593 GB, free: 14.48 MB / 446.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006811/0.4652, allocations: 358.5 kB / 0.5933 GB, free: 14.14 MB / 446.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001038/0.4662, allocations: 0.7477 MB / 0.5941 GB, free: 13.21 MB / 446.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001865/0.4681, allocations: 1.2 MB / 0.5952 GB, free: 11.83 MB / 446.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.32e-06/0.4681, allocations: 4 kB / 0.5952 GB, free: 11.83 MB / 446.1 MB
Notification: Performance of matching and sorting (n=158) (initialization): time 0.00462/0.4727, allocations: 1.474 MB / 0.5967 GB, free: 10.34 MB / 446.1 MB
Notification: Performance of prepare postOptimizeDAE: time 2.907e-05/0.4727, allocations: 12 kB / 0.5967 GB, free: 10.33 MB / 446.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.714e-05/0.4727, allocations: 12 kB / 0.5967 GB, free: 10.32 MB / 446.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.002305/0.475, allocations: 250.1 kB / 0.5969 GB, free: 10.07 MB / 446.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.001602/0.4766, allocations: 331.5 kB / 0.5972 GB, free: 9.742 MB / 446.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.006087/0.4827, allocations: 3.593 MB / 0.6008 GB, free: 5.953 MB / 446.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008007/0.4835, allocations: 40 kB / 0.6008 GB, free: 5.914 MB / 446.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001342/0.4837, allocations: 75.91 kB / 0.6009 GB, free: 5.84 MB / 446.1 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 58
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (152):
 * Single equations (assignments): 150
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.0004723/0.4841, allocations: 273.4 kB / 0.6011 GB, free: 5.562 MB / 446.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001913/0.4843, allocations: 87.55 kB / 0.6012 GB, free: 5.477 MB / 446.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.00465/0.489, allocations: 1.324 MB / 0.6025 GB, free: 4.133 MB / 446.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.186e-05/0.489, allocations: 3.984 kB / 0.6025 GB, free: 4.129 MB / 446.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.785e-06/0.489, allocations: 0 / 0.6025 GB, free: 4.129 MB / 446.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001453/0.4891, allocations: 71.44 kB / 0.6026 GB, free: 4.059 MB / 446.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001321/0.4893, allocations: 27.92 kB / 0.6026 GB, free: 4.031 MB / 446.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005267/0.4898, allocations: 16 kB / 0.6026 GB, free: 4.016 MB / 446.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001789/0.49, allocations: 84.84 kB / 0.6027 GB, free: 3.934 MB / 446.1 MB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.003811/0.4938, allocations: 1.155 MB / 0.6038 GB, free: 2.766 MB / 446.1 MB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.00254/0.4963, allocations: 1.528 MB / 0.6053 GB, free: 1.223 MB / 446.1 MB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0006624/0.497, allocations: 383.7 kB / 0.6057 GB, free: 0.8477 MB / 446.1 MB
Notification: Performance of sorting global known variables: time 0.0004361/0.4974, allocations: 355.1 kB / 0.606 GB, free: 0.5078 MB / 446.1 MB
Notification: Performance of Backend: time 5.01e-07/0.4974, allocations: 4 kB / 0.606 GB, free: 0.5039 MB / 446.1 MB
Notification: Performance of simCode: created initialization part: time 0.00408/0.5015, allocations: 1.877 MB / 0.6079 GB, free: 14.59 MB / 462.1 MB
Notification: Performance of SimCode: time 0.003214/0.5047, allocations: 2.318 MB / 0.6101 GB, free: 12.21 MB / 462.1 MB
Notification: Performance of Templates: time 0.04622/0.5509, allocations: 29.6 MB / 0.639 GB, free: 14.76 MB / 494.1 MB
"
[Timeout remaining time 659]
make -j1 -f Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.makefile [Timeout 660]
(rm -f Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe ; mkfifo Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe ; head -c 1048576 < Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe >> ../files/Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.sim & ./Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_master_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 5.7760050340002635]
Failed to read output from testmodel.py, exit status != 0:
0.5591699200012954 0.573872168 0.15535169099999996
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f450839ef50>