Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001328/0.001328, allocations: 108.2 kB / 19.71 MB, free: 2.145 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001464/0.001464, allocations: 211 kB / 23 MB, free: 4.969 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.48/1.48, allocations: 230.6 MB / 256.8 MB, free: 7.809 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1337/0.1337, allocations: 23.88 MB / 337.1 MB, free: 10.99 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002165/0.002165, allocations: 75.89 kB / 472.4 MB, free: 6.996 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3231/0.3252, allocations: 59.86 MB / 0.5198 GB, free: 9.77 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO): time 0.09153/0.4168, allocations: 42.85 MB / 0.5616 GB, free: 14.21 MB / 414.1 MB
Notification: Performance of NFInst.instExpressions: time 0.104/0.5207, allocations: 76.44 MB / 0.6363 GB, free: 2.301 MB / 478.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.005557/0.5263, allocations: 99.19 kB / 0.6364 GB, free: 2.203 MB / 478.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.006194/0.5325, allocations: 1.741 MB / 0.6381 GB, free: 460 kB / 478.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.02157/0.5541, allocations: 7.096 MB / 0.645 GB, free: 9.305 MB / 494.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.03309/0.5871, allocations: 12.4 MB / 0.6571 GB, free: 12.83 MB / 0.4981 GB
Notification: Performance of NFFlatten.flatten: time 0.03465/0.6218, allocations: 30.99 MB / 0.6874 GB, free: 13.73 MB / 0.5294 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.02583/0.6476, allocations: 19.02 MB / 0.706 GB, free: 10.58 MB / 0.545 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.03431/0.6819, allocations: 20.63 MB / 0.7261 GB, free: 5.91 MB / 0.5606 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.5029/1.185, allocations: 19.51 MB / 0.7452 GB, free: 41.21 MB / 0.5607 GB
Notification: Performance of NFPackage.collectConstants: time 0.01493/1.2, allocations: 3.636 MB / 0.7487 GB, free: 41.21 MB / 0.5607 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.04095/1.241, allocations: 12.47 MB / 0.7609 GB, free: 41.21 MB / 0.5607 GB
Notification: Performance of NFScalarize.scalarize: time 0.0171/1.258, allocations: 8.24 MB / 0.7689 GB, free: 41.21 MB / 0.5607 GB
Notification: Performance of NFVerifyModel.verify: time 0.02668/1.284, allocations: 12.19 MB / 0.7808 GB, free: 40.75 MB / 0.5607 GB
Notification: Performance of NFConvertDAE.convert: time 0.07013/1.355, allocations: 52.39 MB / 0.832 GB, free: 16.67 MB / 0.5607 GB
Notification: Performance of FrontEnd - DAE generated: time 6.533e-06/1.355, allocations: 0 / 0.832 GB, free: 16.67 MB / 0.5607 GB
Notification: Performance of FrontEnd: time 2.064e-06/1.355, allocations: 3.625 kB / 0.832 GB, free: 16.67 MB / 0.5607 GB
Notification: Performance of Transformations before backend: time 0.00126/1.356, allocations: 0 / 0.832 GB, free: 16.67 MB / 0.5607 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 4405
 * Number of variables: 4405
Notification: Performance of Generate backend data structure: time 0.09333/1.449, allocations: 27.62 MB / 0.859 GB, free: 11.96 MB / 0.5763 GB
Notification: Performance of prepare preOptimizeDAE: time 4.901e-05/1.449, allocations: 8.031 kB / 0.859 GB, free: 11.96 MB / 0.5763 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.0329/1.482, allocations: 4.618 MB / 0.8635 GB, free: 7.336 MB / 0.5763 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0454/1.528, allocations: 14.69 MB / 0.8778 GB, free: 9.184 MB / 0.5919 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.003617/1.531, allocations: 3.677 MB / 0.8814 GB, free: 4.965 MB / 0.5919 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.01247/1.544, allocations: 1.769 MB / 0.8832 GB, free: 3.195 MB / 0.5919 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.1071/1.651, allocations: 40.99 MB / 0.9232 GB, free: 9.957 MB / 0.6388 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.000727/1.651, allocations: 10.94 kB / 0.9232 GB, free: 9.953 MB / 0.6388 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.009937/1.661, allocations: 0.6797 MB / 0.9239 GB, free: 9.273 MB / 0.6388 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003867/1.662, allocations: 418.6 kB / 0.9243 GB, free: 8.867 MB / 0.6388 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.1276/1.789, allocations: 55.23 MB / 0.9782 GB, free: 1.652 MB / 0.6857 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.5639/2.353, allocations: 135.7 MB / 1.111 GB, free: 99.29 MB / 0.6857 GB
Notification: Performance of preOpt comSubExp (simulation): time 1.057/3.411, allocations: 284.2 MB / 1.388 GB, free: 183.8 MB / 0.7169 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.03399/3.445, allocations: 21.51 MB / 1.409 GB, free: 162.2 MB / 0.7169 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.1643/3.609, allocations: 88.95 MB / 1.496 GB, free: 74.76 MB / 0.7169 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 9.551e-05/3.609, allocations: 160.8 kB / 1.496 GB, free: 74.6 MB / 0.7169 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.03308/3.642, allocations: 7.345 MB / 1.503 GB, free: 67.8 MB / 0.7169 GB
Notification: Performance of pre-optimization done (n=1160): time 4.705e-05/3.642, allocations: 0 / 1.503 GB, free: 67.8 MB / 0.7169 GB
Notification: Performance of matching and sorting (n=1312): time 1.027/4.669, allocations: 149.4 MB / 1.649 GB, free: 225 MB / 0.7169 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001619/4.669, allocations: 186.3 kB / 1.65 GB, free: 224.9 MB / 0.7169 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.01853/4.688, allocations: 11.49 MB / 1.661 GB, free: 218.9 MB / 0.7169 GB
Notification: Performance of collectPreVariables (initialization): time 0.004593/4.692, allocations: 241.7 kB / 1.661 GB, free: 218.6 MB / 0.7169 GB
Notification: Performance of collectInitialEqns (initialization): time 0.004711/4.697, allocations: 8.246 MB / 1.669 GB, free: 210.4 MB / 0.7169 GB
Notification: Performance of collectInitialBindings (initialization): time 0.007405/4.704, allocations: 4.767 MB / 1.674 GB, free: 205.7 MB / 0.7169 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.01293/4.717, allocations: 3.813 MB / 1.677 GB, free: 201.8 MB / 0.7169 GB
Notification: Performance of setup shared object (initialization): time 3.573e-05/4.717, allocations: 305.1 kB / 1.678 GB, free: 201.5 MB / 0.7169 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.01806/4.735, allocations: 13.89 MB / 1.691 GB, free: 187.6 MB / 0.7169 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.02307/4.758, allocations: 19.35 MB / 1.71 GB, free: 165.9 MB / 0.7169 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0463/4.805, allocations: 34.72 MB / 1.744 GB, free: 128.7 MB / 0.7169 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.000168/4.805, allocations: 52 kB / 1.744 GB, free: 128.7 MB / 0.7169 GB
Notification: Performance of matching and sorting (n=2196) (initialization): time 0.5054/5.31, allocations: 93.06 MB / 1.835 GB, free: 35.48 MB / 0.7169 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0001715/5.311, allocations: 80 kB / 1.835 GB, free: 35.4 MB / 0.7169 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0002312/5.311, allocations: 172 kB / 1.835 GB, free: 35.23 MB / 0.7169 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.3192/5.63, allocations: 25.93 MB / 1.861 GB, free: 235.7 MB / 0.7169 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.02076/5.651, allocations: 4.333 MB / 1.865 GB, free: 235.7 MB / 0.7169 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2153/5.866, allocations: 107.2 MB / 1.97 GB, free: 195 MB / 0.7169 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.02116/5.887, allocations: 0.9756 MB / 1.971 GB, free: 194 MB / 0.7169 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.005153/5.892, allocations: 1.088 MB / 1.972 GB, free: 192.9 MB / 0.7169 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 782
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (2138):
 * Single equations (assignments): 2135
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 3
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (41,12,73.3%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.01689/5.909, allocations: 6.207 MB / 1.978 GB, free: 186.8 MB / 0.7169 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.007468/5.917, allocations: 1.237 MB / 1.979 GB, free: 186.3 MB / 0.7169 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.3252/6.242, allocations: 57.34 MB / 2.035 GB, free: 129.9 MB / 0.7169 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0004949/6.242, allocations: 74.62 kB / 2.035 GB, free: 129.8 MB / 0.7169 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 4.486e-05/6.242, allocations: 7.938 kB / 2.035 GB, free: 129.8 MB / 0.7169 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.01402/6.256, allocations: 3.983 MB / 2.039 GB, free: 126.3 MB / 0.7169 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.006451/6.263, allocations: 331.9 kB / 2.039 GB, free: 125.9 MB / 0.7169 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0156/6.279, allocations: 0.6399 MB / 2.04 GB, free: 125.3 MB / 0.7169 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01585/6.294, allocations: 4.292 MB / 2.044 GB, free: 121 MB / 0.7169 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.06866/6.363, allocations: 30.24 MB / 2.073 GB, free: 90.99 MB / 0.7169 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.06724/6.43, allocations: 45.04 MB / 2.117 GB, free: 45.87 MB / 0.7169 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.01892/6.449, allocations: 12.44 MB / 2.13 GB, free: 33.42 MB / 0.7169 GB
Notification: Performance of sorting global known variables: time 0.01288/6.462, allocations: 7.665 MB / 2.137 GB, free: 25.79 MB / 0.7169 GB
Notification: Performance of Backend: time 4.01e-07/6.462, allocations: 0 / 2.137 GB, free: 25.79 MB / 0.7169 GB
Notification: Performance of simCode: created initialization part: time 0.3169/6.779, allocations: 24.95 MB / 2.161 GB, free: 258.6 MB / 0.7169 GB
Notification: Performance of SimCode: time 0.05751/6.836, allocations: 34.96 MB / 2.196 GB, free: 247.7 MB / 0.7169 GB
Notification: Performance of Templates: time 0.7145/7.551, allocations: 427.4 MB / 2.613 GB, free: 165.6 MB / 0.7169 GB
"
[Timeout remaining time 652]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllosteryCO.pipe 2>&1) [Timeout 480]
[Calling os._exit(0), Time elapsed: 45.334677774997544]
Failed to read output from testmodel.py, exit status != 0:
7.559787123987917 7.568817011 6.211683843
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f5cd5d6ef50>