Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001273/0.001273, allocations: 109.1 kB / 19.71 MB, free: 2.145 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001398/0.001398, allocations: 212.9 kB / 23 MB, free: 4.969 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.436/1.436, allocations: 230.6 MB / 256.8 MB, free: 7.812 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1307/0.1307, allocations: 23.89 MB / 337.1 MB, free: 10.96 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery")
translateModel(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002131/0.002131, allocations: 71.88 kB / 472.4 MB, free: 6.984 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.3205/0.3226, allocations: 59.86 MB / 0.5198 GB, free: 9.781 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery): time 0.08665/0.4093, allocations: 39.92 MB / 0.5588 GB, free: 0.8555 MB / 398.1 MB
Notification: Performance of NFInst.instExpressions: time 0.08934/0.4986, allocations: 64.09 MB / 0.6214 GB, free: 1.617 MB / 462.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.004315/0.5029, allocations: 83.31 kB / 0.6214 GB, free: 1.535 MB / 462.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.004316/0.5073, allocations: 1.477 MB / 0.6229 GB, free: 48 kB / 462.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.01769/0.5249, allocations: 5.99 MB / 0.6287 GB, free: 10.01 MB / 478.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.02796/0.5529, allocations: 10.4 MB / 0.6389 GB, free: 15.56 MB / 494.1 MB
Notification: Performance of NFFlatten.flatten: time 0.03106/0.584, allocations: 26.68 MB / 0.6649 GB, free: 4.793 MB / 0.4981 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.02154/0.6055, allocations: 16.27 MB / 0.6808 GB, free: 4.402 MB / 0.5137 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.02769/0.6332, allocations: 17.82 MB / 0.6982 GB, free: 2.547 MB / 0.5294 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.02941/0.6626, allocations: 16.73 MB / 0.7146 GB, free: 1.773 MB / 0.545 GB
Notification: Performance of NFPackage.collectConstants: time 0.01068/0.6733, allocations: 3.129 MB / 0.7176 GB, free: 14.64 MB / 0.5606 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.03186/0.7051, allocations: 10.53 MB / 0.7279 GB, free: 4.105 MB / 0.5606 GB
Notification: Performance of NFScalarize.scalarize: time 0.4674/1.173, allocations: 7.066 MB / 0.7348 GB, free: 51.11 MB / 0.5607 GB
Notification: Performance of NFVerifyModel.verify: time 0.02788/1.2, allocations: 10.51 MB / 0.7451 GB, free: 51.11 MB / 0.5607 GB
Notification: Performance of NFConvertDAE.convert: time 0.06558/1.266, allocations: 44.91 MB / 0.7889 GB, free: 47.14 MB / 0.5607 GB
Notification: Performance of FrontEnd - DAE generated: time 6.473e-06/1.266, allocations: 0 / 0.7889 GB, free: 47.14 MB / 0.5607 GB
Notification: Performance of FrontEnd: time 2.154e-06/1.266, allocations: 0 / 0.7889 GB, free: 47.14 MB / 0.5607 GB
Notification: Performance of Transformations before backend: time 0.001083/1.267, allocations: 0 / 0.7889 GB, free: 47.14 MB / 0.5607 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 3808
 * Number of variables: 3808
Notification: Performance of Generate backend data structure: time 0.08801/1.355, allocations: 23.66 MB / 0.812 GB, free: 34.54 MB / 0.5607 GB
Notification: Performance of prepare preOptimizeDAE: time 4.991e-05/1.355, allocations: 7 kB / 0.812 GB, free: 34.54 MB / 0.5607 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.02814/1.383, allocations: 3.982 MB / 0.8159 GB, free: 32.76 MB / 0.5607 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.03466/1.418, allocations: 12.64 MB / 0.8283 GB, free: 26.16 MB / 0.5607 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.002127/1.42, allocations: 3.067 MB / 0.8313 GB, free: 23.33 MB / 0.5607 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.01187/1.432, allocations: 1.53 MB / 0.8328 GB, free: 22.78 MB / 0.5607 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.09099/1.523, allocations: 35.25 MB / 0.8672 GB, free: 11.93 MB / 0.5763 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0006212/1.524, allocations: 10.12 kB / 0.8672 GB, free: 11.93 MB / 0.5763 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.009306/1.533, allocations: 0.5872 MB / 0.8678 GB, free: 11.34 MB / 0.5763 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0003408/1.533, allocations: 360 kB / 0.8681 GB, free: 10.99 MB / 0.5763 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.1074/1.641, allocations: 47.47 MB / 0.9145 GB, free: 11.53 MB / 0.6232 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.5613/2.202, allocations: 116.6 MB / 1.028 GB, free: 190.2 MB / 0.67 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.5715/2.773, allocations: 218.4 MB / 1.242 GB, free: 17.34 MB / 0.67 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.3007/3.074, allocations: 18.49 MB / 1.26 GB, free: 231.5 MB / 0.67 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.1699/3.244, allocations: 76.48 MB / 1.334 GB, free: 203 MB / 0.67 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 0.0001012/3.244, allocations: 135.3 kB / 1.334 GB, free: 202.9 MB / 0.67 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.03037/3.274, allocations: 6.271 MB / 1.341 GB, free: 199.8 MB / 0.67 GB
Notification: Performance of pre-optimization done (n=995): time 4.538e-05/3.275, allocations: 0 / 1.341 GB, free: 199.8 MB / 0.67 GB
Notification: Performance of matching and sorting (n=1129): time 0.6749/3.949, allocations: 130.5 MB / 1.468 GB, free: 70.99 MB / 0.67 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 9.505e-05/3.949, allocations: 164.2 kB / 1.468 GB, free: 70.82 MB / 0.67 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0158/3.965, allocations: 9.746 MB / 1.478 GB, free: 61.1 MB / 0.67 GB
Notification: Performance of collectPreVariables (initialization): time 0.005386/3.971, allocations: 213.7 kB / 1.478 GB, free: 60.89 MB / 0.67 GB
Notification: Performance of collectInitialEqns (initialization): time 0.005304/3.976, allocations: 7.086 MB / 1.485 GB, free: 53.8 MB / 0.67 GB
Notification: Performance of collectInitialBindings (initialization): time 0.007335/3.983, allocations: 4.1 MB / 1.489 GB, free: 49.75 MB / 0.67 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.01595/3.999, allocations: 3.277 MB / 1.492 GB, free: 46.46 MB / 0.67 GB
Notification: Performance of setup shared object (initialization): time 5.009e-05/3.999, allocations: 301.1 kB / 1.492 GB, free: 46.17 MB / 0.67 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.021/4.02, allocations: 11.84 MB / 1.504 GB, free: 34.31 MB / 0.67 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.02417/4.044, allocations: 16.57 MB / 1.52 GB, free: 15.66 MB / 0.67 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.3294/4.374, allocations: 29.75 MB / 1.549 GB, free: 200.6 MB / 0.67 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 0.0001828/4.374, allocations: 42.91 kB / 1.549 GB, free: 200.6 MB / 0.67 GB
Notification: Performance of matching and sorting (n=1889) (initialization): time 0.4611/4.835, allocations: 81.39 MB / 1.629 GB, free: 164.2 MB / 0.67 GB
Notification: Performance of prepare postOptimizeDAE: time 0.0001845/4.835, allocations: 68 kB / 1.629 GB, free: 164.1 MB / 0.67 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0002827/4.836, allocations: 148 kB / 1.629 GB, free: 164 MB / 0.67 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.06105/4.897, allocations: 22.4 MB / 1.651 GB, free: 141.7 MB / 0.67 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0175/4.914, allocations: 3.725 MB / 1.654 GB, free: 138 MB / 0.67 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.2023/5.117, allocations: 92.36 MB / 1.745 GB, free: 45.44 MB / 0.67 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.01907/5.136, allocations: 0.8223 MB / 1.745 GB, free: 44.62 MB / 0.67 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.005155/5.141, allocations: 0.9485 MB / 1.746 GB, free: 43.67 MB / 0.67 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 677
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (1841):
 * Single equations (assignments): 1838
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 3
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 2 systems
   {(1,3,100.0%), (33,10,82.4%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.01531/5.156, allocations: 5.368 MB / 1.751 GB, free: 38.38 MB / 0.67 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.006253/5.162, allocations: 1.063 MB / 1.753 GB, free: 37.9 MB / 0.67 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.5423/5.705, allocations: 48.43 MB / 1.8 GB, free: 194.6 MB / 0.67 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.0003851/5.705, allocations: 58.36 kB / 1.8 GB, free: 194.6 MB / 0.67 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 3.633e-05/5.705, allocations: 1.312 kB / 1.8 GB, free: 194.6 MB / 0.67 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.01216/5.717, allocations: 3.387 MB / 1.803 GB, free: 194.6 MB / 0.67 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.00602/5.723, allocations: 283.6 kB / 1.803 GB, free: 194.6 MB / 0.67 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.01278/5.736, allocations: 0.5382 MB / 1.804 GB, free: 194.6 MB / 0.67 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.01299/5.749, allocations: 3.649 MB / 1.808 GB, free: 194.6 MB / 0.67 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.06027/5.809, allocations: 25.61 MB / 1.833 GB, free: 190.4 MB / 0.67 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.05945/5.869, allocations: 38.12 MB / 1.87 GB, free: 175.9 MB / 0.67 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.01665/5.885, allocations: 10.54 MB / 1.88 GB, free: 169.9 MB / 0.67 GB
Notification: Performance of sorting global known variables: time 0.01057/5.896, allocations: 6.482 MB / 1.886 GB, free: 164.4 MB / 0.67 GB
Notification: Performance of Backend: time 2.81e-07/5.896, allocations: 0 / 1.886 GB, free: 164.4 MB / 0.67 GB
Notification: Performance of simCode: created initialization part: time 0.0686/5.965, allocations: 21.15 MB / 1.907 GB, free: 144.6 MB / 0.67 GB
Notification: Performance of SimCode: time 0.05009/6.015, allocations: 30.09 MB / 1.936 GB, free: 114.7 MB / 0.67 GB
Notification: Performance of Templates: time 0.65/6.665, allocations: 362 MB / 2.29 GB, free: 19.3 MB / 0.67 GB
"
[Timeout remaining time 653]
make -j1 -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.sim & ./Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.Hemoglobin.HemoglobinMultipleAllostery.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 31.45640379100223]
Failed to read output from testmodel.py, exit status != 0:
6.673501960001886 6.682435525 5.413973535
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f9188422f50>