Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001337/0.001337, allocations: 109.1 kB / 19.71 MB, free: 2.145 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001433/0.001433, allocations: 210.8 kB / 23 MB, free: 4.969 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.446/1.446, allocations: 230.6 MB / 256.8 MB, free: 7.824 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1396/0.1396, allocations: 23.88 MB / 337.1 MB, free: 10.97 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis,tolerance=1e-08,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis")
translateModel(Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis,tolerance=1e-08,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002104/0.002104, allocations: 63.91 kB / 472.4 MB, free: 7.023 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.2852/0.2873, allocations: 59.87 MB / 0.5198 GB, free: 9.832 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis): time 0.0705/0.3578, allocations: 26.04 MB / 0.5452 GB, free: 13.56 MB / 398.1 MB
Notification: Performance of NFInst.instExpressions: time 0.02068/0.3785, allocations: 14.7 MB / 0.5596 GB, free: 196 kB / 398.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0009031/0.3794, allocations: 19.81 kB / 0.5596 GB, free: 176 kB / 398.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.000975/0.3804, allocations: 307.6 kB / 0.5599 GB, free: 15.94 MB / 414.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.004405/0.3848, allocations: 1.475 MB / 0.5613 GB, free: 14.7 MB / 414.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.005539/0.3903, allocations: 2.018 MB / 0.5633 GB, free: 13.03 MB / 414.1 MB
Notification: Performance of NFFlatten.flatten: time 0.002463/0.3928, allocations: 1.551 MB / 0.5648 GB, free: 11.64 MB / 414.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.001124/0.3939, allocations: 0.7108 MB / 0.5655 GB, free: 11 MB / 414.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.001003/0.3949, allocations: 0.7794 MB / 0.5662 GB, free: 10.22 MB / 414.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.001238/0.3961, allocations: 0.8605 MB / 0.5671 GB, free: 9.355 MB / 414.1 MB
Notification: Performance of NFPackage.collectConstants: time 0.0002316/0.3964, allocations: 132 kB / 0.5672 GB, free: 9.227 MB / 414.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 0.004879/0.4013, allocations: 1.751 MB / 0.5689 GB, free: 7.473 MB / 414.1 MB
Notification: Performance of NFScalarize.scalarize: time 0.0004102/0.4017, allocations: 335 kB / 0.5692 GB, free: 7.145 MB / 414.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.0007734/0.4024, allocations: 0.5719 MB / 0.5698 GB, free: 6.57 MB / 414.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.007371/0.4098, allocations: 3.44 MB / 0.5732 GB, free: 3.117 MB / 414.1 MB
Notification: Performance of FrontEnd - DAE generated: time 5.681e-06/0.4098, allocations: 0 / 0.5732 GB, free: 3.117 MB / 414.1 MB
Notification: Performance of FrontEnd: time 1.843e-06/0.4098, allocations: 0 / 0.5732 GB, free: 3.117 MB / 414.1 MB
Notification: Performance of Transformations before backend: time 2.761e-05/0.4098, allocations: 0 / 0.5732 GB, free: 3.117 MB / 414.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 276
 * Number of variables: 276
Notification: Performance of Generate backend data structure: time 0.003983/0.4138, allocations: 1.78 MB / 0.5749 GB, free: 1.297 MB / 414.1 MB
Notification: Performance of prepare preOptimizeDAE: time 4.666e-05/0.4139, allocations: 8.031 kB / 0.5749 GB, free: 1.289 MB / 414.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.001384/0.4153, allocations: 279.5 kB / 0.5752 GB, free: 1.016 MB / 414.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.001311/0.4166, allocations: 0.6127 MB / 0.5758 GB, free: 388 kB / 414.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0001461/0.4167, allocations: 134.1 kB / 0.5759 GB, free: 240 kB / 414.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.000233/0.4169, allocations: 120.3 kB / 0.576 GB, free: 120 kB / 414.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.002445/0.4194, allocations: 1.333 MB / 0.5773 GB, free: 14.74 MB / 430.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.961e-05/0.4194, allocations: 7.922 kB / 0.5773 GB, free: 14.73 MB / 430.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.0001284/0.4196, allocations: 44 kB / 0.5774 GB, free: 14.69 MB / 430.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 2.602e-05/0.4196, allocations: 28 kB / 0.5774 GB, free: 14.66 MB / 430.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.00293/0.4225, allocations: 1.671 MB / 0.579 GB, free: 12.98 MB / 430.1 MB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.006894/0.4294, allocations: 3.383 MB / 0.5823 GB, free: 9.508 MB / 430.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.003722/0.4331, allocations: 1.871 MB / 0.5842 GB, free: 7.637 MB / 430.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.000915/0.434, allocations: 0.5338 MB / 0.5847 GB, free: 7.098 MB / 430.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 0.006689/0.4407, allocations: 2.783 MB / 0.5874 GB, free: 4.289 MB / 430.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.649e-05/0.4408, allocations: 43.16 kB / 0.5874 GB, free: 4.238 MB / 430.1 MB
Notification: Performance of pre-optimization done (n=78): time 3.096e-06/0.4408, allocations: 0 / 0.5874 GB, free: 4.238 MB / 430.1 MB
Notification: Performance of matching and sorting (n=95): time 0.01745/0.4582, allocations: 3.433 MB / 0.5908 GB, free: 0.7695 MB / 430.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 5.279e-05/0.4583, allocations: 64.41 kB / 0.5908 GB, free: 0.6953 MB / 430.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0007646/0.459, allocations: 0.5701 MB / 0.5914 GB, free: 116 kB / 430.1 MB
Notification: Performance of collectPreVariables (initialization): time 9.941e-05/0.4591, allocations: 41.7 kB / 0.5914 GB, free: 68 kB / 430.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.0004566/0.4596, allocations: 0.5507 MB / 0.592 GB, free: 15.51 MB / 446.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0003498/0.4599, allocations: 349 kB / 0.5923 GB, free: 15.16 MB / 446.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0003813/0.4603, allocations: 242.8 kB / 0.5925 GB, free: 14.92 MB / 446.1 MB
Notification: Performance of setup shared object (initialization): time 0.0002267/0.4605, allocations: 390.7 kB / 0.5929 GB, free: 14.53 MB / 446.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.0006689/0.4612, allocations: 358.5 kB / 0.5933 GB, free: 14.18 MB / 446.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.001021/0.4622, allocations: 0.7477 MB / 0.594 GB, free: 13.25 MB / 446.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.001829/0.4641, allocations: 1.196 MB / 0.5952 GB, free: 11.88 MB / 446.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 7.765e-06/0.4641, allocations: 7.938 kB / 0.5952 GB, free: 11.87 MB / 446.1 MB
Notification: Performance of matching and sorting (n=158) (initialization): time 0.004647/0.4687, allocations: 1.47 MB / 0.5966 GB, free: 10.39 MB / 446.1 MB
Notification: Performance of prepare postOptimizeDAE: time 2.661e-05/0.4687, allocations: 12 kB / 0.5966 GB, free: 10.38 MB / 446.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 1.788e-05/0.4688, allocations: 12 kB / 0.5966 GB, free: 10.36 MB / 446.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 0.0023/0.4711, allocations: 250.2 kB / 0.5969 GB, free: 10.11 MB / 446.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.00165/0.4727, allocations: 331.5 kB / 0.5972 GB, free: 9.789 MB / 446.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.006055/0.4788, allocations: 3.582 MB / 0.6007 GB, free: 6.008 MB / 446.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0008787/0.4796, allocations: 43.98 kB / 0.6007 GB, free: 5.965 MB / 446.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.0001306/0.4798, allocations: 75.91 kB / 0.6008 GB, free: 5.891 MB / 446.1 MB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 58
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (152):
 * Single equations (assignments): 150
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 2
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 1 system
   {(1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 1 system
   {(1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.000474/0.4803, allocations: 277.5 kB / 0.6011 GB, free: 5.609 MB / 446.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.0001927/0.4804, allocations: 79.48 kB / 0.6011 GB, free: 5.531 MB / 446.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.004575/0.485, allocations: 1.33 MB / 0.6024 GB, free: 4.184 MB / 446.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 1.466e-05/0.485, allocations: 7.969 kB / 0.6024 GB, free: 4.176 MB / 446.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 2.996e-06/0.485, allocations: 0 / 0.6024 GB, free: 4.176 MB / 446.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 0.0001588/0.4852, allocations: 71.44 kB / 0.6025 GB, free: 4.105 MB / 446.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.0001284/0.4853, allocations: 19.94 kB / 0.6025 GB, free: 4.086 MB / 446.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0005395/0.4859, allocations: 23.98 kB / 0.6026 GB, free: 4.062 MB / 446.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.0001877/0.4861, allocations: 84.84 kB / 0.6026 GB, free: 3.98 MB / 446.1 MB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.003814/0.4899, allocations: 1.151 MB / 0.6038 GB, free: 2.816 MB / 446.1 MB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.002491/0.4924, allocations: 1.532 MB / 0.6053 GB, free: 1.27 MB / 446.1 MB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0006406/0.493, allocations: 375.7 kB / 0.6056 GB, free: 0.9023 MB / 446.1 MB
Notification: Performance of sorting global known variables: time 0.0004493/0.4934, allocations: 367.1 kB / 0.606 GB, free: 0.5508 MB / 446.1 MB
Notification: Performance of Backend: time 4.01e-07/0.4934, allocations: 0 / 0.606 GB, free: 0.5508 MB / 446.1 MB
Notification: Performance of simCode: created initialization part: time 0.004034/0.4975, allocations: 1.887 MB / 0.6078 GB, free: 14.62 MB / 462.1 MB
Notification: Performance of SimCode: time 0.003218/0.5007, allocations: 2.306 MB / 0.6101 GB, free: 12.26 MB / 462.1 MB
Notification: Performance of Templates: time 0.04517/0.5459, allocations: 29.6 MB / 0.639 GB, free: 14.8 MB / 494.1 MB
"
[Timeout remaining time 659]
make -j1 -f Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.sim & ./Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.ClimateChange.HydrogenotrophicMethanogenesis.pipe 2>&1) [Timeout 480]
[Calling sys.exit(0), Time elapsed: 5.687413229999947]
Failed to read output from testmodel.py, exit status != 0:
0.5543582139944192 0.568337649 0.155403058
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f9e2c0b6f50>