Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001317/0.001317, allocations: 101.1 kB / 19.71 MB, free: 2.152 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001427/0.001427, allocations: 209.6 kB / 23 MB, free: 4.965 MB / 14.72 MB
"
[Timeout remaining time 180]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.475/1.475, allocations: 230.6 MB / 256.8 MB, free: 7.812 MB / 206.1 MB
"
[Timeout remaining time 178]
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180]
"Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1347/0.1347, allocations: 23.88 MB / 337.1 MB, free: 11 MB / 270.1 MB
"
[Timeout remaining time 180]
Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo)
Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo)
Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo)
Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo)
Running command: translateModel(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane")
translateModel(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane") [Timeout 660]
"Notification: Chemical requested package Modelica of version 4.0.0. Modelica 4.1.0 is used instead which states that it is fully compatible without conversion script needed.
Notification: Performance of FrontEnd - loaded program: time 0.002064/0.002064, allocations: 63.91 kB / 472.4 MB, free: 7.008 MB / 334.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.317/0.3191, allocations: 59.87 MB / 0.5198 GB, free: 9.781 MB / 382.1 MB
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated.
[/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: 
Your model is using an outer \"system\" component but
an inner \"system\" component is not defined.
For simulation drag Modelica.Fluid.System into your model
to specify system properties.
Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane): time 0.09478/0.4139, allocations: 46.92 MB / 0.5656 GB, free: 10.5 MB / 414.1 MB
Notification: Performance of NFInst.instExpressions: time 0.1434/0.5573, allocations: 106.1 MB / 0.6692 GB, free: 420 kB / 0.4981 GB
Notification: Performance of NFInst.updateImplicitVariability: time 0.00682/0.5641, allocations: 95.25 kB / 0.6693 GB, free: 324 kB / 0.4981 GB
Notification: Performance of NFTyping.typeComponents: time 0.008487/0.5726, allocations: 2.152 MB / 0.6714 GB, free: 14.14 MB / 0.5137 GB
Notification: Performance of NFTyping.typeBindings: time 0.03124/0.6038, allocations: 10.18 MB / 0.6814 GB, free: 3.895 MB / 0.5137 GB
Notification: Performance of NFTyping.typeClassSections: time 0.04361/0.6474, allocations: 15.77 MB / 0.6968 GB, free: 4.027 MB / 0.5294 GB
Notification: Performance of NFFlatten.flatten: time 0.017/0.6644, allocations: 10.54 MB / 0.7071 GB, free: 9.453 MB / 0.545 GB
Notification: Performance of NFFlatten.resolveConnections: time 0.007623/0.6721, allocations: 4.698 MB / 0.7116 GB, free: 4.676 MB / 0.545 GB
Notification: Performance of NFEvalConstants.evaluate: time 0.009467/0.6815, allocations: 5.445 MB / 0.717 GB, free: 15.22 MB / 0.5606 GB
Notification: Performance of NFSimplifyModel.simplify: time 0.01089/0.6924, allocations: 5.974 MB / 0.7228 GB, free: 9.223 MB / 0.5606 GB
Notification: Performance of NFPackage.collectConstants: time 0.00435/0.6968, allocations: 0.8867 MB / 0.7237 GB, free: 8.336 MB / 0.5606 GB
Notification: Performance of NFFlatten.collectFunctions: time 0.2834/0.9802, allocations: 13.37 MB / 0.7367 GB, free: 37.29 MB / 0.5606 GB
Notification: Performance of NFScalarize.scalarize: time 0.003363/0.9835, allocations: 2.139 MB / 0.7388 GB, free: 37.29 MB / 0.5606 GB
Notification: Performance of NFVerifyModel.verify: time 0.009085/0.9926, allocations: 3.877 MB / 0.7426 GB, free: 37.29 MB / 0.5606 GB
Notification: Performance of NFConvertDAE.convert: time 0.05163/1.044, allocations: 24.86 MB / 0.7669 GB, free: 35.73 MB / 0.5606 GB
Notification: Performance of FrontEnd - DAE generated: time 7.193e-06/1.044, allocations: 3.188 kB / 0.7669 GB, free: 35.73 MB / 0.5606 GB
Notification: Performance of FrontEnd: time 2.435e-06/1.044, allocations: 0 / 0.7669 GB, free: 35.73 MB / 0.5606 GB
Notification: Performance of Transformations before backend: time 0.0004933/1.045, allocations: 0 / 0.7669 GB, free: 35.73 MB / 0.5606 GB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 1818
 * Number of variables: 1818
Notification: Performance of Generate backend data structure: time 0.02618/1.071, allocations: 10.62 MB / 0.7772 GB, free: 31.29 MB / 0.5606 GB
Notification: Performance of prepare preOptimizeDAE: time 4.997e-05/1.071, allocations: 9.844 kB / 0.7773 GB, free: 31.29 MB / 0.5606 GB
Notification: Performance of preOpt normalInlineFunction (simulation): time 0.01103/1.082, allocations: 1.956 MB / 0.7792 GB, free: 30.82 MB / 0.5606 GB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.009143/1.091, allocations: 3.513 MB / 0.7826 GB, free: 30.01 MB / 0.5606 GB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 0.0005115/1.092, allocations: 0.5803 MB / 0.7832 GB, free: 29.93 MB / 0.5606 GB
Notification: Performance of preOpt expandDerOperator (simulation): time 0.002828/1.094, allocations: 0.7349 MB / 0.7839 GB, free: 29.91 MB / 0.5606 GB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.02005/1.115, allocations: 9.22 MB / 0.7929 GB, free: 29.37 MB / 0.5606 GB
Notification: Performance of preOpt findStateOrder (simulation): time 0.0001668/1.115, allocations: 10.91 kB / 0.7929 GB, free: 29.37 MB / 0.5606 GB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 0.001249/1.116, allocations: 289.5 kB / 0.7932 GB, free: 29.37 MB / 0.5606 GB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 0.0001432/1.116, allocations: 172.1 kB / 0.7933 GB, free: 29.37 MB / 0.5606 GB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.02371/1.14, allocations: 12.58 MB / 0.8056 GB, free: 29.14 MB / 0.5606 GB
Warning: The model contains alias variables with redundant start and/or conflicting nominal values. It is recommended to resolve the conflicts, because otherwise the system could be hard to solve. To print the conflicting alias sets and the chosen candidates please use -d=aliasConflicts.
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.05587/1.196, allocations: 24.08 MB / 0.8291 GB, free: 14.42 MB / 0.5606 GB
Notification: Performance of preOpt comSubExp (simulation): time 0.03216/1.228, allocations: 17.11 MB / 0.8458 GB, free: 13.4 MB / 0.5762 GB
Notification: Performance of preOpt resolveLoops (simulation): time 0.009004/1.237, allocations: 4.095 MB / 0.8498 GB, free: 9.289 MB / 0.5762 GB
Notification: Performance of preOpt evalFunc (simulation): time 0.06067/1.298, allocations: 19.51 MB / 0.8689 GB, free: 6.137 MB / 0.5919 GB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 9.074e-05/1.298, allocations: 91.12 kB / 0.869 GB, free: 6.035 MB / 0.5919 GB
Notification: Performance of preOpt simplifyInStream (simulation): time 0.00349/1.301, allocations: 0.6191 MB / 0.8696 GB, free: 5.426 MB / 0.5919 GB
Notification: Performance of pre-optimization done (n=581): time 1.717e-05/1.301, allocations: 3.562 kB / 0.8696 GB, free: 5.426 MB / 0.5919 GB
Notification: Performance of matching and sorting (n=757): time 0.1381/1.439, allocations: 35.26 MB / 0.904 GB, free: 2.461 MB / 0.6231 GB
Notification: Performance of inlineWhenForInitialization (initialization): time 0.0001069/1.439, allocations: 132 kB / 0.9041 GB, free: 2.32 MB / 0.6231 GB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.004938/1.444, allocations: 3.278 MB / 0.9074 GB, free: 15.02 MB / 0.6387 GB
Notification: Performance of collectPreVariables (initialization): time 0.001469/1.446, allocations: 153.7 kB / 0.9075 GB, free: 14.86 MB / 0.6387 GB
Notification: Performance of collectInitialEqns (initialization): time 0.002691/1.448, allocations: 3.244 MB / 0.9107 GB, free: 11.62 MB / 0.6387 GB
Notification: Performance of collectInitialBindings (initialization): time 0.003639/1.452, allocations: 2.707 MB / 0.9133 GB, free: 8.953 MB / 0.6387 GB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.003023/1.455, allocations: 1.702 MB / 0.915 GB, free: 7.238 MB / 0.6387 GB
Notification: Performance of setup shared object (initialization): time 0.0001297/1.455, allocations: 301.1 kB / 0.9153 GB, free: 6.941 MB / 0.6387 GB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.005873/1.461, allocations: 2.871 MB / 0.9181 GB, free: 4.066 MB / 0.6387 GB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.008918/1.47, allocations: 5.747 MB / 0.9237 GB, free: 13.09 MB / 0.6544 GB
Notification: Performance of analyzeInitialSystem (initialization): time 0.0176/1.488, allocations: 9.507 MB / 0.933 GB, free: 2.773 MB / 0.6544 GB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 9.722e-05/1.488, allocations: 27.94 kB / 0.933 GB, free: 2.746 MB / 0.6544 GB
Notification: Performance of matching and sorting (n=1205) (initialization): time 0.0289/1.517, allocations: 10.7 MB / 0.9434 GB, free: 8.633 MB / 0.67 GB
Notification: Performance of prepare postOptimizeDAE: time 8.141e-05/1.517, allocations: 44 kB / 0.9435 GB, free: 8.59 MB / 0.67 GB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 0.0001089/1.517, allocations: 95.69 kB / 0.9436 GB, free: 8.5 MB / 0.67 GB
Notification: Performance of postOpt tearingSystem (initialization): time 0.01051/1.527, allocations: 1.824 MB / 0.9453 GB, free: 6.684 MB / 0.67 GB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.01128/1.539, allocations: 2.314 MB / 0.9476 GB, free: 4.512 MB / 0.67 GB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 0.02075/1.559, allocations: 12.08 MB / 0.9594 GB, free: 8 MB / 0.6856 GB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.006984/1.566, allocations: 295.9 kB / 0.9597 GB, free: 7.711 MB / 0.6856 GB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 0.001709/1.568, allocations: 0.5194 MB / 0.9602 GB, free: 7.191 MB / 0.6856 GB
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 413
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (1143):
 * Single equations (assignments): 1137
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 6
 * Mixed (continuous/discrete) equation systems: 0
Notification: Torn system details for strict tearing set:
 * Linear torn systems (#iteration vars, #inner vars, density): 3 systems
   {(2,20,100.0%), (1,3,100.0%), (1,3,100.0%)}
 * Non-linear torn systems (#iteration vars, #inner vars): 3 systems
   {(3,27), (1,3), (1,3)}
Notification: Performance of prepare postOptimizeDAE: time 0.003714/1.572, allocations: 1.204 MB / 0.9614 GB, free: 6.125 MB / 0.6856 GB
Notification: Performance of postOpt lateInlineFunction (simulation): time 0.001957/1.574, allocations: 0.5776 MB / 0.9619 GB, free: 5.547 MB / 0.6856 GB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 0.02649/1.6, allocations: 10.1 MB / 0.9718 GB, free: 11.52 MB / 0.7012 GB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 0.000171/1.6, allocations: 39.84 kB / 0.9718 GB, free: 11.48 MB / 0.7012 GB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.657e-05/1.6, allocations: 0 / 0.9718 GB, free: 11.48 MB / 0.7012 GB
Notification: Performance of postOpt removeConstants (simulation): time 0.004277/1.605, allocations: 1.237 MB / 0.973 GB, free: 10.24 MB / 0.7012 GB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 0.00145/1.606, allocations: 144 kB / 0.9732 GB, free: 10.1 MB / 0.7012 GB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.003771/1.61, allocations: 159.9 kB / 0.9733 GB, free: 9.941 MB / 0.7012 GB
Notification: Performance of postOpt findZeroCrossings (simulation): time 0.001174/1.611, allocations: 0.6068 MB / 0.9739 GB, free: 9.332 MB / 0.7012 GB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.02404/1.635, allocations: 8.329 MB / 0.9821 GB, free: 1.102 MB / 0.7012 GB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.2609/1.896, allocations: 11.23 MB / 0.993 GB, free: 287 MB / 0.7012 GB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.005411/1.901, allocations: 2.966 MB / 0.9959 GB, free: 285.8 MB / 0.7012 GB
Notification: Performance of sorting global known variables: time 0.002729/1.904, allocations: 1.868 MB / 0.9977 GB, free: 285.1 MB / 0.7012 GB
Notification: Performance of Backend: time 2.51e-07/1.904, allocations: 3.969 kB / 0.9977 GB, free: 285.1 MB / 0.7012 GB
Notification: Performance of simCode: created initialization part: time 0.0307/1.935, allocations: 13.07 MB / 1.011 GB, free: 282.2 MB / 0.7012 GB
Notification: Performance of SimCode: time 0.01806/1.953, allocations: 12.22 MB / 1.022 GB, free: 276.4 MB / 0.7012 GB
Notification: Performance of Templates: time 0.2274/2.18, allocations: 208.9 MB / 1.226 GB, free: 82.12 MB / 0.7012 GB
"
[Timeout remaining time 658]
make -j1 -f Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.makefile [Timeout 660]
(rm -f Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.pipe ; mkfifo Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.pipe ; head -c 1048576 < Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.pipe >> ../files/Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.sim & ./Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane  -abortSlowSimulation -alarm=480 -lv LOG_STATS > Chemical_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.pipe 2>&1) [Timeout 480]
[Calling os._exit(0), Time elapsed: 13.883812372005195]
Failed to read output from testmodel.py, exit status != 0:
2.188724206003826 2.197503064 1.150766032
Calling exit ...
<OMPython.OMCSessionZMQ object at 0x7f91e1ff6f50>