Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr BioChem_BioChem.Examples.CellDivison.cell.conf.json
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo", uses=false)
loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo", uses=false)
Using package BioChem with version 1.1.2 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo)
Using package Modelica with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo)
Using package Complex with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo)
Using package ModelicaServices with version 4.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo)
Running command: translateModel(BioChem.Examples.CellDivison.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CellDivison.cell")
translateModel(BioChem.Examples.CellDivison.cell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=-2,variableFilter="",fileNamePrefix="BioChem_BioChem.Examples.CellDivison.cell")
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.0.0+maint.om/package.mo): time 0.001069/0.001069, allocations: 112.7 kB / 16.42 MB, free: 6.512 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.0.0+maint.om/package.mo): time 0.001014/0.001014, allocations: 190.7 kB / 17.35 MB, free: 5.738 MB / 14.72 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.0.0+maint.om/package.mo): time 1.28/1.28, allocations: 222.9 MB / 241 MB, free: 15.14 MB / 206.1 MB
Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/BioChem 1.1.2-master/package.mo): time 0.06203/0.06203, allocations: 12.28 MB / 303.5 MB, free: 3.223 MB / 238.1 MB
Warning: Ignoring unknown experiment annotation option: Algorithm = "dassl"
Notification: Performance of FrontEnd - loaded program: time 0.001237/0.001237, allocations: 60.05 kB / 420.7 MB, free: 17.02 MB / 302.1 MB
Notification: Performance of FrontEnd - Absyn->SCode: time 0.07468/0.07593, allocations: 52.08 MB / 472.8 MB, free: 12.95 MB / 350.1 MB
Notification: Performance of NFInst.instantiate(BioChem.Examples.CellDivison.cell): time 0.00767/0.08363, allocations: 5.802 MB / 478.6 MB, free: 7.121 MB / 350.1 MB
Notification: Performance of NFInst.instExpressions: time 0.0005252/0.08418, allocations: 466.7 kB / 479.1 MB, free: 6.664 MB / 350.1 MB
Notification: Performance of NFInst.updateImplicitVariability: time 0.0001283/0.08431, allocations: 28 kB / 479.1 MB, free: 6.637 MB / 350.1 MB
Notification: Performance of NFTyping.typeComponents: time 0.0001331/0.08445, allocations: 79.33 kB / 479.2 MB, free: 6.559 MB / 350.1 MB
Notification: Performance of NFTyping.typeBindings: time 0.0002223/0.08469, allocations: 114.9 kB / 479.3 MB, free: 6.445 MB / 350.1 MB
Notification: Performance of NFTyping.typeClassSections: time 0.0002204/0.08492, allocations: 99.84 kB / 479.4 MB, free: 6.348 MB / 350.1 MB
Notification: Performance of NFFlatten.flatten: time 0.000388/0.08531, allocations: 458.7 kB / 479.8 MB, free: 5.898 MB / 350.1 MB
Notification: Performance of NFFlatten.resolveConnections: time 0.0003459/0.08567, allocations: 241.9 kB / 480.1 MB, free: 5.652 MB / 350.1 MB
Notification: Performance of NFEvalConstants.evaluate: time 0.0001681/0.08584, allocations: 191.4 kB / 480.2 MB, free: 5.465 MB / 350.1 MB
Notification: Performance of NFSimplifyModel.simplify: time 0.0002291/0.08608, allocations: 230.9 kB / 480.5 MB, free: 5.238 MB / 350.1 MB
Notification: Performance of NFPackage.collectConstants: time 6.607e-05/0.08615, allocations: 52 kB / 480.5 MB, free: 5.188 MB / 350.1 MB
Notification: Performance of NFFlatten.collectFunctions: time 6.985e-05/0.08623, allocations: 48 kB / 480.6 MB, free: 5.141 MB / 350.1 MB
Notification: Performance of NFScalarize.scalarize: time 8.326e-05/0.08632, allocations: 107.6 kB / 480.7 MB, free: 5.035 MB / 350.1 MB
Notification: Performance of NFVerifyModel.verify: time 0.0001953/0.08652, allocations: 250.8 kB / 480.9 MB, free: 4.789 MB / 350.1 MB
Notification: Performance of NFConvertDAE.convert: time 0.0004341/0.08696, allocations: 0.5254 MB / 481.4 MB, free: 4.262 MB / 350.1 MB
Notification: Performance of FrontEnd - DAE generated: time 5.35e-06/0.08697, allocations: 0 / 481.4 MB, free: 4.262 MB / 350.1 MB
Notification: Performance of FrontEnd: time 1.473e-06/0.08698, allocations: 3.938 kB / 481.4 MB, free: 4.258 MB / 350.1 MB
Notification: Performance of Transformations before backend: time 7.133e-06/0.08699, allocations: 0 / 481.4 MB, free: 4.258 MB / 350.1 MB
Notification: Model statistics after passing the front-end and creating the data structures used by the back-end:
 * Number of equations: 148
 * Number of variables: 148
Notification: Performance of Generate backend data structure: time 0.0009356/0.08793, allocations: 0.7337 MB / 482.2 MB, free: 3.473 MB / 350.1 MB
Notification: Performance of prepare preOptimizeDAE: time 3.683e-05/0.08797, allocations: 8.031 kB / 482.2 MB, free: 3.465 MB / 350.1 MB
Notification: Performance of preOpt normalInlineFunction (simulation): time 8.049e-05/0.08806, allocations: 52.38 kB / 482.2 MB, free: 3.414 MB / 350.1 MB
Notification: Performance of preOpt evaluateParameters (simulation): time 0.0001411/0.08821, allocations: 207.8 kB / 482.4 MB, free: 3.172 MB / 350.1 MB
Notification: Performance of preOpt simplifyIfEquations (simulation): time 3.545e-05/0.08825, allocations: 41.69 kB / 482.5 MB, free: 3.133 MB / 350.1 MB
Notification: Performance of preOpt expandDerOperator (simulation): time 7.604e-05/0.08833, allocations: 64.31 kB / 482.5 MB, free: 3.07 MB / 350.1 MB
Notification: Performance of preOpt clockPartitioning (simulation): time 0.0007275/0.08907, allocations: 0.5158 MB / 483.1 MB, free: 2.539 MB / 350.1 MB
Notification: Performance of preOpt findStateOrder (simulation): time 2.026e-05/0.0891, allocations: 4.188 kB / 483.1 MB, free: 2.535 MB / 350.1 MB
Notification: Performance of preOpt replaceEdgeChange (simulation): time 4.077e-05/0.08914, allocations: 23.94 kB / 483.1 MB, free: 2.512 MB / 350.1 MB
Notification: Performance of preOpt inlineArrayEqn (simulation): time 1.524e-05/0.08916, allocations: 16 kB / 483.1 MB, free: 2.496 MB / 350.1 MB
Notification: Performance of preOpt removeEqualRHS (simulation): time 0.0005583/0.08973, allocations: 369 kB / 483.5 MB, free: 2.137 MB / 350.1 MB
Notification: Performance of preOpt removeSimpleEquations (simulation): time 0.002238/0.09197, allocations: 1.579 MB / 485 MB, free: 0.4961 MB / 350.1 MB
Notification: Performance of preOpt comSubExp (simulation): time 0.0004754/0.09246, allocations: 290.3 kB / 485.3 MB, free: 208 kB / 350.1 MB
Notification: Performance of preOpt resolveLoops (simulation): time 0.0002281/0.0927, allocations: 184.8 kB / 485.5 MB, free: 20 kB / 350.1 MB
Notification: Performance of preOpt evalFunc (simulation): time 2.038e-05/0.09273, allocations: 4 kB / 485.5 MB, free: 16 kB / 350.1 MB
Notification: Performance of preOpt encapsulateWhenConditions (simulation): time 3.478e-05/0.09277, allocations: 42.48 kB / 485.6 MB, free: 15.96 MB / 366.1 MB
Notification: Performance of pre-optimization done (n=35): time 1.653e-06/0.09278, allocations: 0 / 485.6 MB, free: 15.96 MB / 366.1 MB
Notification: Performance of matching and sorting (n=42): time 0.00328/0.09606, allocations: 1.421 MB / 487 MB, free: 14.5 MB / 366.1 MB
Notification: Performance of inlineWhenForInitialization (initialization): time 2.91e-05/0.09611, allocations: 59.41 kB / 487 MB, free: 14.43 MB / 366.1 MB
Notification: Performance of selectInitializationVariablesDAE (initialization): time 0.0001528/0.09626, allocations: 187.9 kB / 487.2 MB, free: 14.23 MB / 366.1 MB
Notification: Performance of collectPreVariables (initialization): time 2.388e-05/0.0963, allocations: 33.64 kB / 487.2 MB, free: 14.19 MB / 366.1 MB
Notification: Performance of collectInitialEqns (initialization): time 0.000132/0.09643, allocations: 271.5 kB / 487.5 MB, free: 13.91 MB / 366.1 MB
Notification: Performance of collectInitialBindings (initialization): time 0.0001008/0.09654, allocations: 157.7 kB / 487.7 MB, free: 13.76 MB / 366.1 MB
Notification: Performance of simplifyInitialFunctions (initialization): time 0.0001159/0.09666, allocations: 98.16 kB / 487.8 MB, free: 13.66 MB / 366.1 MB
Notification: Performance of setup shared object (initialization): time 0.0001093/0.09678, allocations: 334.8 kB / 488.1 MB, free: 13.32 MB / 366.1 MB
Notification: Performance of preBalanceInitialSystem (initialization): time 0.000202/0.09699, allocations: 137.2 kB / 488.2 MB, free: 13.19 MB / 366.1 MB
Notification: Performance of partitionIndependentBlocks (initialization): time 0.0002978/0.09729, allocations: 307.5 kB / 488.5 MB, free: 12.81 MB / 366.1 MB
Notification: Performance of analyzeInitialSystem (initialization): time 0.003806/0.1011, allocations: 1.15 MB / 489.7 MB, free: 11.59 MB / 366.1 MB
Notification: Performance of solveInitialSystemEqSystem (initialization): time 5.601e-06/0.1011, allocations: 8 kB / 489.7 MB, free: 11.58 MB / 366.1 MB
Notification: Performance of matching and sorting (n=74) (initialization): time 0.0007289/0.1019, allocations: 0.511 MB / 490.2 MB, free: 11.06 MB / 366.1 MB
Notification: Performance of prepare postOptimizeDAE: time 2.107e-05/0.1019, allocations: 8 kB / 490.2 MB, free: 11.05 MB / 366.1 MB
Notification: Performance of postOpt simplifyComplexFunction (initialization): time 9.578e-06/0.1019, allocations: 8.688 kB / 490.2 MB, free: 11.04 MB / 366.1 MB
Notification: Performance of postOpt tearingSystem (initialization): time 1.998e-05/0.1019, allocations: 15.94 kB / 490.2 MB, free: 11.03 MB / 366.1 MB
Notification: Performance of postOpt solveSimpleEquations (initialization): time 0.0005149/0.1025, allocations: 143.8 kB / 490.4 MB, free: 10.89 MB / 366.1 MB
Notification: Performance of postOpt calculateStrongComponentJacobians (initialization): time 1.861e-05/0.1025, allocations: 11.98 kB / 490.4 MB, free: 10.88 MB / 366.1 MB
Notification: Performance of postOpt simplifyAllExpressions (initialization): time 0.0002026/0.1027, allocations: 23.91 kB / 490.4 MB, free: 10.85 MB / 366.1 MB
Notification: Performance of postOpt collapseArrayExpressions (initialization): time 2.926e-05/0.1027, allocations: 24 kB / 490.4 MB, free: 10.83 MB / 366.1 MB
Warning: Assuming fixed start value for the following 8 variables:
         V:VARIABLE(start = 1.0 fixed = true stateSelect=StateSelect.prefer )  "Compartment volume" type: Real
         EmptySet.c:VARIABLE(min = 0.0 start = 0.0 unit = "mol/l" fixed = true stateSelect=StateSelect.prefer )  "Current concentration of substance (mM)" type: Real
         YP.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         Y.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         pM.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         M.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         CP.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
         C2.n:VARIABLE(min = 0.0 unit = "mol" fixed = true stateSelect=StateSelect.prefer )  "Number of moles of substance in pool (mol)" type: Real
Notification: Model statistics after passing the back-end for initialization:
 * Number of independent subsystems: 25
 * Number of states: 0 ()
 * Number of discrete variables: 0 ()
 * Number of discrete states: 0 ()
 * Number of clocked states: 0 ()
 * Top-level inputs: 0
Notification: Strong component statistics for initialization (74):
 * Single equations (assignments): 74
 * Array equations: 0
 * Algorithm blocks: 0
 * Record equations: 0
 * When equations: 0
 * If-equations: 0
 * Equation systems (not torn): 0
 * Torn equation systems: 0
 * Mixed (continuous/discrete) equation systems: 0
Notification: Performance of prepare postOptimizeDAE: time 0.0002864/0.103, allocations: 198.3 kB / 490.6 MB, free: 10.62 MB / 366.1 MB
Notification: Performance of postOpt lateInlineFunction (simulation): time 5.209e-05/0.1031, allocations: 23.72 kB / 490.6 MB, free: 10.6 MB / 366.1 MB
Notification: Performance of postOpt wrapFunctionCalls (simulation): time 9.281e-05/0.1032, allocations: 50.98 kB / 490.7 MB, free: 10.55 MB / 366.1 MB
Notification: Performance of postOpt simplifysemiLinear (simulation): time 6.282e-06/0.1032, allocations: 3.938 kB / 490.7 MB, free: 10.55 MB / 366.1 MB
Notification: Performance of postOpt simplifyComplexFunction (simulation): time 1.543e-06/0.1032, allocations: 0 / 490.7 MB, free: 10.55 MB / 366.1 MB
Notification: Performance of postOpt removeConstants (simulation): time 5.288e-05/0.1033, allocations: 96.83 kB / 490.8 MB, free: 10.43 MB / 366.1 MB
Notification: Performance of postOpt simplifyTimeIndepFuncCalls (simulation): time 4.029e-05/0.1033, allocations: 11.98 kB / 490.8 MB, free: 10.42 MB / 366.1 MB
Notification: Performance of postOpt simplifyAllExpressions (simulation): time 0.0001774/0.1035, allocations: 4 kB / 490.8 MB, free: 10.42 MB / 366.1 MB
Notification: Performance of postOpt findZeroCrossings (simulation): time 4.503e-05/0.1035, allocations: 23.97 kB / 490.8 MB, free: 10.39 MB / 366.1 MB
Notification: Performance of postOpt createDAEmodeBDAE (simulation): time 0.0009037/0.1044, allocations: 456.4 kB / 491.3 MB, free: 9.941 MB / 366.1 MB
Notification: Performance of postOpt symbolicJacobianDAE (simulation): time 0.0007811/0.1052, allocations: 0.6518 MB / 491.9 MB, free: 9.27 MB / 366.1 MB
Notification: Performance of postOpt setEvaluationStage (simulation): time 0.0002009/0.1055, allocations: 144.4 kB / 492.1 MB, free: 9.129 MB / 366.1 MB
Notification: Performance of sorting global known variables: time 8.685e-05/0.1055, allocations: 128 kB / 492.2 MB, free: 9.004 MB / 366.1 MB
Notification: Performance of Backend: time 4.3e-07/0.1056, allocations: 0 / 492.2 MB, free: 9.004 MB / 366.1 MB
Notification: Performance of simCode: created initialization part: time 0.0006748/0.1062, allocations: 360.6 kB / 492.5 MB, free: 8.648 MB / 366.1 MB
Notification: Performance of SimCode: time 0.001532/0.1078, allocations: 1.43 MB / 494 MB, free: 7.172 MB / 366.1 MB
Notification: Performance of Templates: time 0.006548/0.1143, allocations: 3.25 MB / 497.2 MB, free: 3.918 MB / 366.1 MB
make -j1 -f BioChem_BioChem.Examples.CellDivison.cell.makefile
(rm -f BioChem_BioChem.Examples.CellDivison.cell.pipe ; mkfifo BioChem_BioChem.Examples.CellDivison.cell.pipe ; head -c 1048576 < BioChem_BioChem.Examples.CellDivison.cell.pipe >> ../files/BioChem_BioChem.Examples.CellDivison.cell.sim & ./BioChem_BioChem.Examples.CellDivison.cell  -abortSlowSimulation -alarm=480 -lv LOG_STATS > BioChem_BioChem.Examples.CellDivison.cell.pipe 2>&1)