Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.SimpleReaction2.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001497/0.001497, allocations: 104.3 kB / 19.76 MB, free: 1.906 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001689/0.001689, allocations: 214.6 kB / 23.06 MB, free: 4.98 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.301/1.301, allocations: 230.7 MB / 256.9 MB, free: 7.762 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1223/0.1223, allocations: 23.97 MB / 337.3 MB, free: 10.82 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.SimpleReaction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.SimpleReaction2") translateModel(Chemical.Obsolete.Examples.SimpleReaction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.SimpleReaction2") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.697e-05/1.697e-05, allocations: 4.109 kB / 472.6 MB, free: 6.867 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.SimpleReaction2): time 0.06537/0.06539, allocations: 25.49 MB / 498.1 MB, free: 13.5 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.01277/0.07815, allocations: 10.25 MB / 0.4964 GB, free: 3.203 MB / 366.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0005229/0.07868, allocations: 19.81 kB / 0.4965 GB, free: 3.184 MB / 366.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0006449/0.07932, allocations: 238.2 kB / 0.4967 GB, free: 2.949 MB / 366.1 MB Notification: Performance of NFTyping.typeBindings: time 0.002171/0.08149, allocations: 0.9969 MB / 0.4977 GB, free: 1.945 MB / 366.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.003491/0.08498, allocations: 1.534 MB / 0.4992 GB, free: 412 kB / 366.1 MB Notification: Performance of NFFlatten.flatten: time 0.001562/0.08655, allocations: 1.47 MB / 0.5006 GB, free: 14.93 MB / 382.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0007982/0.08734, allocations: 0.5654 MB / 0.5011 GB, free: 14.34 MB / 382.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0006439/0.08799, allocations: 0.6351 MB / 0.5018 GB, free: 13.7 MB / 382.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0006859/0.08867, allocations: 0.5993 MB / 0.5023 GB, free: 13.1 MB / 382.1 MB Notification: Performance of NFPackage.collectConstants: time 0.0001541/0.08883, allocations: 104 kB / 0.5024 GB, free: 13 MB / 382.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.002519/0.09135, allocations: 1.221 MB / 0.5036 GB, free: 11.78 MB / 382.1 MB Notification: Performance of combineBinaries: time 0.001647/0.09299, allocations: 2.075 MB / 0.5057 GB, free: 9.684 MB / 382.1 MB Notification: Performance of replaceArrayConstructors: time 0.0007587/0.09375, allocations: 1.18 MB / 0.5068 GB, free: 8.488 MB / 382.1 MB Notification: Performance of NFVerifyModel.verify: time 0.0001474/0.0939, allocations: 96 kB / 0.5069 GB, free: 8.395 MB / 382.1 MB Notification: Performance of FrontEnd: time 0.0001423/0.09404, allocations: 51.83 kB / 0.507 GB, free: 8.344 MB / 382.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 222 (220) * Number of variables: 222 (219) Notification: Performance of [SIM] Bindings: time 0.004372/0.09841, allocations: 4.947 MB / 0.5118 GB, free: 3.203 MB / 382.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.0007608/0.09918, allocations: 0.7317 MB / 0.5125 GB, free: 2.457 MB / 382.1 MB Notification: Performance of [SIM] Early Inline: time 0.1697/0.2689, allocations: 4.171 MB / 0.5166 GB, free: 38.15 MB / 382.1 MB Notification: Performance of [SIM] Simplify 1: time 0.0008414/0.2697, allocations: 485.3 kB / 0.517 GB, free: 38 MB / 382.1 MB Warning: NBAlias.setStartFixed: Alias set with conflicting unfixed start values detected. Use -d=dumprepl for more information. Notification: Performance of [SIM] Alias: time 0.005262/0.275, allocations: 4.416 MB / 0.5213 GB, free: 36.98 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0004039/0.2754, allocations: 327 kB / 0.5217 GB, free: 36.86 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 0.0001571/0.2755, allocations: 169.6 kB / 0.5218 GB, free: 36.79 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.000396/0.2759, allocations: 403 kB / 0.5222 GB, free: 36.66 MB / 382.1 MB Notification: Performance of [SIM] Events: time 0.000131/0.276, allocations: 87.12 kB / 0.5223 GB, free: 36.66 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.0006874/0.2767, allocations: 0.6624 MB / 0.5229 GB, free: 36.59 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.001887/0.2786, allocations: 1.515 MB / 0.5244 GB, free: 36.41 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.0009035/0.2795, allocations: 1.081 MB / 0.5255 GB, free: 36.23 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.001017/0.2805, allocations: 0.7041 MB / 0.5262 GB, free: 35.91 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.001661/0.2822, allocations: 1.927 MB / 0.528 GB, free: 34.91 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 7.823e-05/0.2823, allocations: 42.89 kB / 0.5281 GB, free: 34.89 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.0001753/0.2825, allocations: 300.1 kB / 0.5284 GB, free: 34.73 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.002246/0.2847, allocations: 1.972 MB / 0.5303 GB, free: 34.31 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 2.812e-05/0.2847, allocations: 55.19 kB / 0.5303 GB, free: 34.27 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 7.42e-07/0.2847, allocations: 0 / 0.5303 GB, free: 34.27 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.0005907/0.2853, allocations: 0.5213 MB / 0.5309 GB, free: 34.13 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 6.693e-06/0.2853, allocations: 3.656 kB / 0.5309 GB, free: 34.13 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 3.286e-05/0.2854, allocations: 102.7 kB / 0.531 GB, free: 34.06 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 1.529e-05/0.2854, allocations: 8.125 kB / 0.531 GB, free: 34.06 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.002101/0.2875, allocations: 1.855 MB / 0.5328 GB, free: 33.54 MB / 382.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref reaction.substrates[2].u is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.4732068279990926] Failed to read output from testmodel.py, exit status != 0: 0.2947969799861312 0.303745044 0.20760082100000002 Calling exit ...