Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001465/0.001465, allocations: 104.3 kB / 19.77 MB, free: 2.051 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001605/0.001605, allocations: 217.9 kB / 23.07 MB, free: 4.844 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.289/1.289, allocations: 230.7 MB / 256.9 MB, free: 7.77 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.122/0.122, allocations: 23.99 MB / 337.3 MB, free: 10.82 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2") translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.753e-05/1.753e-05, allocations: 3.969 kB / 472.6 MB, free: 6.855 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2): time 0.0664/0.06642, allocations: 27.18 MB / 499.8 MB, free: 11.81 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.01865/0.08507, allocations: 16.03 MB / 0.5037 GB, free: 11.71 MB / 382.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0008399/0.08591, allocations: 23.81 kB / 0.5038 GB, free: 11.69 MB / 382.1 MB Notification: Performance of NFTyping.typeComponents: time 0.001067/0.08698, allocations: 428.6 kB / 0.5042 GB, free: 11.27 MB / 382.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001873/0.08885, allocations: 0.8069 MB / 0.5049 GB, free: 10.45 MB / 382.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.006627/0.09548, allocations: 2.854 MB / 0.5077 GB, free: 7.582 MB / 382.1 MB Notification: Performance of NFFlatten.flatten: time 0.001959/0.09744, allocations: 1.845 MB / 0.5095 GB, free: 5.73 MB / 382.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0008252/0.09826, allocations: 0.7044 MB / 0.5102 GB, free: 5.008 MB / 382.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0007683/0.09903, allocations: 0.7946 MB / 0.511 GB, free: 4.211 MB / 382.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0008149/0.09985, allocations: 0.7196 MB / 0.5117 GB, free: 3.488 MB / 382.1 MB Notification: Performance of NFPackage.collectConstants: time 0.000198/0.1, allocations: 144 kB / 0.5118 GB, free: 3.348 MB / 382.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.003665/0.1037, allocations: 1.704 MB / 0.5135 GB, free: 1.641 MB / 382.1 MB Notification: Performance of combineBinaries: time 0.1639/0.2676, allocations: 2.754 MB / 0.5162 GB, free: 33.3 MB / 382.1 MB Notification: Performance of replaceArrayConstructors: time 0.0009732/0.2685, allocations: 1.673 MB / 0.5178 GB, free: 32.68 MB / 382.1 MB Notification: Performance of NFVerifyModel.verify: time 0.000238/0.2688, allocations: 134.4 kB / 0.518 GB, free: 32.68 MB / 382.1 MB Notification: Performance of FrontEnd: time 0.0002059/0.269, allocations: 70.95 kB / 0.518 GB, free: 32.68 MB / 382.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 303 (297) * Number of variables: 303 (294) Notification: Performance of [SIM] Bindings: time 0.00468/0.2737, allocations: 6.999 MB / 0.5249 GB, free: 29.8 MB / 382.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.0008955/0.2746, allocations: 0.9626 MB / 0.5258 GB, free: 29.71 MB / 382.1 MB Notification: Performance of [SIM] Early Inline: time 0.00727/0.2818, allocations: 7.395 MB / 0.533 GB, free: 27.67 MB / 382.1 MB Notification: Performance of [SIM] Simplify 1: time 0.001503/0.2833, allocations: 1.074 MB / 0.5341 GB, free: 27.35 MB / 382.1 MB Notification: Performance of [SIM] Alias: time 0.006417/0.2897, allocations: 6.541 MB / 0.5405 GB, free: 24.31 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0007497/0.2905, allocations: 0.7769 MB / 0.5412 GB, free: 24.07 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 0.0002/0.2907, allocations: 265.4 kB / 0.5415 GB, free: 23.92 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.000432/0.2911, allocations: 0.599 MB / 0.5421 GB, free: 23.57 MB / 382.1 MB Notification: Performance of [SIM] Events: time 0.0001846/0.2913, allocations: 191.4 kB / 0.5422 GB, free: 23.49 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.000889/0.2922, allocations: 1.339 MB / 0.5435 GB, free: 22.7 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.001513/0.2937, allocations: 1.783 MB / 0.5453 GB, free: 21.91 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.001119/0.2948, allocations: 1.909 MB / 0.5471 GB, free: 21.06 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.001595/0.2964, allocations: 1.61 MB / 0.5487 GB, free: 20.32 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.001956/0.2984, allocations: 3.575 MB / 0.5522 GB, free: 17.8 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 8.102e-05/0.2985, allocations: 54.58 kB / 0.5523 GB, free: 17.76 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.0003054/0.2988, allocations: 0.5609 MB / 0.5528 GB, free: 17.34 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.002313/0.3011, allocations: 2.456 MB / 0.5552 GB, free: 16.47 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 0.0001208/0.3012, allocations: 161.8 kB / 0.5554 GB, free: 16.38 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 9.02e-07/0.3012, allocations: 2.656 kB / 0.5554 GB, free: 16.38 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.001052/0.3023, allocations: 1.474 MB / 0.5568 GB, free: 14.98 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 8.416e-06/0.3023, allocations: 8.125 kB / 0.5568 GB, free: 14.97 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 0.0001399/0.3024, allocations: 252.2 kB / 0.5571 GB, free: 14.75 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 2.272e-05/0.3024, allocations: 16.64 kB / 0.5571 GB, free: 14.74 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.00385/0.3063, allocations: 4.879 MB / 0.5618 GB, free: 10.35 MB / 382.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref electrodeReaction.rr is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.516327215009369] Failed to read output from testmodel.py, exit status != 0: 0.31390680302865803 0.323785185 0.051963383 Calling exit ...