Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001298/0.001298, allocations: 104.3 kB / 19.76 MB, free: 1.906 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001377/0.001377, allocations: 214.5 kB / 23.06 MB, free: 4.984 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.334/1.334, allocations: 230.6 MB / 256.9 MB, free: 7.781 MB / 206.1 MB " [Timeout remaining time 178] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1223/0.1223, allocations: 23.99 MB / 337.3 MB, free: 10.8 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell") translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.874e-05/1.874e-05, allocations: 8.047 kB / 472.6 MB, free: 6.84 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell): time 0.06879/0.06881, allocations: 27.69 MB / 0.4886 GB, free: 11.28 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.02323/0.09204, allocations: 19.04 MB / 0.5072 GB, free: 8.164 MB / 382.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.00104/0.09308, allocations: 27.75 kB / 0.5072 GB, free: 8.137 MB / 382.1 MB Notification: Performance of NFTyping.typeComponents: time 0.001312/0.09439, allocations: 488.3 kB / 0.5077 GB, free: 7.656 MB / 382.1 MB Notification: Performance of NFTyping.typeBindings: time 0.002517/0.09691, allocations: 0.966 MB / 0.5086 GB, free: 6.684 MB / 382.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.008222/0.1051, allocations: 3.335 MB / 0.5119 GB, free: 3.328 MB / 382.1 MB Notification: Performance of NFFlatten.flatten: time 0.002562/0.1077, allocations: 2.036 MB / 0.5139 GB, free: 1.285 MB / 382.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0008924/0.1086, allocations: 0.7398 MB / 0.5146 GB, free: 0.5273 MB / 382.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.1726/0.2811, allocations: 0.8692 MB / 0.5154 GB, free: 31.79 MB / 382.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.001366/0.2825, allocations: 0.8118 MB / 0.5162 GB, free: 31.79 MB / 382.1 MB Notification: Performance of NFPackage.collectConstants: time 0.0002821/0.2828, allocations: 148.4 kB / 0.5164 GB, free: 31.79 MB / 382.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.004688/0.2875, allocations: 1.994 MB / 0.5183 GB, free: 31.79 MB / 382.1 MB Notification: Performance of combineBinaries: time 0.001893/0.2894, allocations: 3.005 MB / 0.5212 GB, free: 30.57 MB / 382.1 MB Notification: Performance of replaceArrayConstructors: time 0.00082/0.2902, allocations: 1.825 MB / 0.523 GB, free: 29.46 MB / 382.1 MB Notification: Performance of NFVerifyModel.verify: time 0.0002744/0.2905, allocations: 146.4 kB / 0.5232 GB, free: 29.46 MB / 382.1 MB Notification: Performance of FrontEnd: time 0.0002067/0.2907, allocations: 84.02 kB / 0.5232 GB, free: 29.45 MB / 382.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 323 (317) * Number of variables: 323 (314) Notification: Performance of [SIM] Bindings: time 0.005646/0.2963, allocations: 7.648 MB / 0.5307 GB, free: 26.17 MB / 382.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.001165/0.2975, allocations: 1.106 MB / 0.5318 GB, free: 26.05 MB / 382.1 MB Notification: Performance of [SIM] Early Inline: time 0.007784/0.3053, allocations: 8.171 MB / 0.5398 GB, free: 22.79 MB / 382.1 MB Notification: Performance of [SIM] Simplify 1: time 0.001382/0.3066, allocations: 1.132 MB / 0.5409 GB, free: 22.43 MB / 382.1 MB Notification: Performance of [SIM] Alias: time 0.006574/0.3132, allocations: 7.011 MB / 0.5477 GB, free: 19.04 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0007827/0.314, allocations: 0.817 MB / 0.5485 GB, free: 18.78 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 0.0001812/0.3142, allocations: 259.1 kB / 0.5488 GB, free: 18.63 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.000426/0.3146, allocations: 0.601 MB / 0.5494 GB, free: 18.28 MB / 382.1 MB Notification: Performance of [SIM] Events: time 0.0001954/0.3148, allocations: 190.3 kB / 0.5495 GB, free: 18.21 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.0008434/0.3156, allocations: 1.398 MB / 0.5509 GB, free: 17.35 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.001544/0.3172, allocations: 1.818 MB / 0.5527 GB, free: 16.52 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.001056/0.3182, allocations: 1.938 MB / 0.5546 GB, free: 15.06 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.001696/0.3199, allocations: 1.713 MB / 0.5562 GB, free: 13.43 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.002029/0.322, allocations: 3.65 MB / 0.5598 GB, free: 9.828 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 8.822e-05/0.3221, allocations: 60.05 kB / 0.5599 GB, free: 9.754 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.0003073/0.3224, allocations: 0.561 MB / 0.5604 GB, free: 9.215 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.002312/0.3247, allocations: 2.543 MB / 0.5629 GB, free: 6.637 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 6.906e-05/0.3247, allocations: 99.98 kB / 0.563 GB, free: 6.539 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 6.21e-07/0.3247, allocations: 2.656 kB / 0.563 GB, free: 6.539 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.001254/0.326, allocations: 1.631 MB / 0.5646 GB, free: 4.977 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 9.918e-06/0.326, allocations: 12.03 kB / 0.5646 GB, free: 4.969 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 5.708e-05/0.3261, allocations: 145.4 kB / 0.5647 GB, free: 4.84 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 2.669e-05/0.3261, allocations: 17.44 kB / 0.5648 GB, free: 4.832 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.004761/0.3309, allocations: 5.536 MB / 0.5702 GB, free: 15.8 MB / 398.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref electrodeReaction.rr is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.5707170059904456] Failed to read output from testmodel.py, exit status != 0: 0.33907751797232777 0.35240737800000005 0.058854076000000005 Calling exit ...