Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001491/0.001491, allocations: 104.3 kB / 19.77 MB, free: 2.051 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001571/0.001571, allocations: 214.2 kB / 23.07 MB, free: 4.844 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.304/1.304, allocations: 230.6 MB / 256.9 MB, free: 7.73 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1206/0.1206, allocations: 24 MB / 337.3 MB, free: 10.8 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.668e-05/1.668e-05, allocations: 3.969 kB / 472.6 MB, free: 6.855 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.06448/0.06449, allocations: 23.86 MB / 496.5 MB, free: 15.13 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.007104/0.0716, allocations: 5.573 MB / 0.4903 GB, free: 9.535 MB / 366.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003252/0.07192, allocations: 7.938 kB / 0.4903 GB, free: 9.527 MB / 366.1 MB Notification: Performance of NFTyping.typeComponents: time 0.000519/0.07244, allocations: 142.8 kB / 0.4904 GB, free: 9.387 MB / 366.1 MB Notification: Performance of NFTyping.typeBindings: time 0.0005655/0.07301, allocations: 266 kB / 0.4907 GB, free: 9.125 MB / 366.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.002332/0.07534, allocations: 0.9861 MB / 0.4916 GB, free: 8.133 MB / 366.1 MB Notification: Performance of NFFlatten.flatten: time 0.0005883/0.07593, allocations: 0.549 MB / 0.4922 GB, free: 7.582 MB / 366.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0002816/0.07621, allocations: 164.6 kB / 0.4923 GB, free: 7.418 MB / 366.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0003112/0.07652, allocations: 283.2 kB / 0.4926 GB, free: 7.141 MB / 366.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0003433/0.07686, allocations: 259 kB / 0.4928 GB, free: 6.887 MB / 366.1 MB Notification: Performance of NFPackage.collectConstants: time 6.288e-05/0.07693, allocations: 28 kB / 0.4929 GB, free: 6.859 MB / 366.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0009109/0.07784, allocations: 0.5264 MB / 0.4934 GB, free: 6.332 MB / 366.1 MB Notification: Performance of combineBinaries: time 0.0006424/0.07848, allocations: 0.7892 MB / 0.4942 GB, free: 5.535 MB / 366.1 MB Notification: Performance of replaceArrayConstructors: time 0.0003264/0.07881, allocations: 0.5013 MB / 0.4946 GB, free: 5.027 MB / 366.1 MB Notification: Performance of NFVerifyModel.verify: time 5.494e-05/0.07886, allocations: 36 kB / 0.4947 GB, free: 4.992 MB / 366.1 MB Notification: Performance of FrontEnd: time 7.072e-05/0.07893, allocations: 23.92 kB / 0.4947 GB, free: 4.969 MB / 366.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 65 (63) * Number of variables: 65 (62) Notification: Performance of [SIM] Bindings: time 0.001919/0.08085, allocations: 2.087 MB / 0.4967 GB, free: 2.746 MB / 366.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.0004413/0.08129, allocations: 371.4 kB / 0.4971 GB, free: 2.355 MB / 366.1 MB Notification: Performance of [SIM] Early Inline: time 0.001952/0.08324, allocations: 1.743 MB / 0.4988 GB, free: 0.5938 MB / 366.1 MB Notification: Performance of [SIM] Simplify 1: time 0.0002703/0.08351, allocations: 196.3 kB / 0.499 GB, free: 360 kB / 366.1 MB Notification: Performance of [SIM] Alias: time 0.001677/0.08519, allocations: 1.35 MB / 0.5003 GB, free: 14.71 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0001704/0.08536, allocations: 136.6 kB / 0.5004 GB, free: 14.53 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 8.143e-05/0.08544, allocations: 72.33 kB / 0.5005 GB, free: 14.43 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.0001654/0.08561, allocations: 160.8 kB / 0.5007 GB, free: 14.22 MB / 382.1 MB Notification: Performance of [SIM] Events: time 4.118e-05/0.08565, allocations: 27.98 kB / 0.5007 GB, free: 14.19 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.0004144/0.08606, allocations: 389.6 kB / 0.5011 GB, free: 13.69 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.0007177/0.08678, allocations: 0.5591 MB / 0.5016 GB, free: 13.01 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.0003075/0.08709, allocations: 367.6 kB / 0.502 GB, free: 12.65 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.0006097/0.0877, allocations: 466.3 kB / 0.5024 GB, free: 12.12 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.0006791/0.08838, allocations: 0.7386 MB / 0.5031 GB, free: 11.38 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 4.389e-05/0.08842, allocations: 26.75 kB / 0.5031 GB, free: 11.35 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.0001045/0.08853, allocations: 119.8 kB / 0.5033 GB, free: 11.23 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.000974/0.0895, allocations: 0.7721 MB / 0.504 GB, free: 10.46 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 2.665e-05/0.08953, allocations: 32 kB / 0.504 GB, free: 10.43 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 4.61e-07/0.08953, allocations: 288 / 0.504 GB, free: 10.43 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.0003583/0.08989, allocations: 318.3 kB / 0.5043 GB, free: 9.992 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 8.225e-06/0.08989, allocations: 7.938 kB / 0.5044 GB, free: 9.984 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 2.524e-05/0.08992, allocations: 39.94 kB / 0.5044 GB, free: 9.945 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 1.787e-05/0.08994, allocations: 15.91 kB / 0.5044 GB, free: 9.93 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.0009328/0.09087, allocations: 0.693 MB / 0.5051 GB, free: 9.234 MB / 382.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref reaction.substrates[2].u is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.4663727480219677] Failed to read output from testmodel.py, exit status != 0: 0.09830702905310318 0.28535329600000003 0.20396854 Calling exit ...