Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001528/0.001528, allocations: 104.3 kB / 19.76 MB, free: 1.906 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001525/0.001525, allocations: 213.3 kB / 23.06 MB, free: 4.984 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.309/1.309, allocations: 230.6 MB / 256.9 MB, free: 7.945 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1196/0.1196, allocations: 24 MB / 337.3 MB, free: 10.82 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2") translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.58e-05/1.58e-05, allocations: 6.219 kB / 472.6 MB, free: 6.844 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2): time 0.06435/0.06436, allocations: 24.14 MB / 496.8 MB, free: 14.84 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.00972/0.07408, allocations: 8.078 MB / 0.493 GB, free: 6.73 MB / 366.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0003153/0.0744, allocations: 15.88 kB / 0.493 GB, free: 6.715 MB / 366.1 MB Notification: Performance of NFTyping.typeComponents: time 0.000543/0.07494, allocations: 194.5 kB / 0.4932 GB, free: 6.523 MB / 366.1 MB Notification: Performance of NFTyping.typeBindings: time 0.0007894/0.07573, allocations: 357.3 kB / 0.4935 GB, free: 6.172 MB / 366.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.002901/0.07863, allocations: 1.448 MB / 0.495 GB, free: 4.715 MB / 366.1 MB Notification: Performance of NFFlatten.flatten: time 0.0007561/0.07939, allocations: 0.709 MB / 0.4956 GB, free: 4 MB / 366.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0002916/0.07968, allocations: 196.9 kB / 0.4958 GB, free: 3.801 MB / 366.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0004212/0.0801, allocations: 378.9 kB / 0.4962 GB, free: 3.43 MB / 366.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0004271/0.08053, allocations: 342.8 kB / 0.4965 GB, free: 3.094 MB / 366.1 MB Notification: Performance of NFPackage.collectConstants: time 7.542e-05/0.0806, allocations: 32 kB / 0.4966 GB, free: 3.062 MB / 366.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.001381/0.08199, allocations: 0.7838 MB / 0.4973 GB, free: 2.277 MB / 366.1 MB Notification: Performance of combineBinaries: time 0.0008002/0.08279, allocations: 0.9982 MB / 0.4983 GB, free: 1.27 MB / 366.1 MB Notification: Performance of replaceArrayConstructors: time 0.0003955/0.08318, allocations: 0.6208 MB / 0.4989 GB, free: 0.6406 MB / 366.1 MB Notification: Performance of NFVerifyModel.verify: time 7.229e-05/0.08325, allocations: 44 kB / 0.4989 GB, free: 0.5977 MB / 366.1 MB Notification: Performance of FrontEnd: time 7.991e-05/0.08333, allocations: 35.89 kB / 0.499 GB, free: 0.5625 MB / 366.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 76 (74) * Number of variables: 76 (73) Notification: Performance of [SIM] Bindings: time 0.002316/0.08565, allocations: 2.614 MB / 0.5015 GB, free: 13.8 MB / 382.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.0005419/0.08619, allocations: 451.4 kB / 0.502 GB, free: 13.33 MB / 382.1 MB Notification: Performance of [SIM] Early Inline: time 0.002784/0.08897, allocations: 2.392 MB / 0.5043 GB, free: 10.92 MB / 382.1 MB Notification: Performance of [SIM] Simplify 1: time 0.000322/0.0893, allocations: 216.3 kB / 0.5045 GB, free: 10.66 MB / 382.1 MB Notification: Performance of [SIM] Alias: time 0.002018/0.09131, allocations: 1.654 MB / 0.5061 GB, free: 8.617 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0002157/0.09153, allocations: 174 kB / 0.5063 GB, free: 8.395 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 9.433e-05/0.09162, allocations: 88.33 kB / 0.5064 GB, free: 8.281 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.0001935/0.09182, allocations: 195.1 kB / 0.5066 GB, free: 8.039 MB / 382.1 MB Notification: Performance of [SIM] Events: time 4.569e-05/0.09186, allocations: 35.97 kB / 0.5066 GB, free: 8.004 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.0004509/0.09231, allocations: 449.8 kB / 0.507 GB, free: 7.434 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.0008351/0.09315, allocations: 0.6754 MB / 0.5077 GB, free: 6.629 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.0003816/0.09353, allocations: 445.2 kB / 0.5081 GB, free: 6.195 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.0007157/0.09425, allocations: 0.5524 MB / 0.5086 GB, free: 5.57 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.0008082/0.09506, allocations: 0.9136 MB / 0.5095 GB, free: 4.656 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 5.41e-05/0.09511, allocations: 29.36 kB / 0.5096 GB, free: 4.617 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.0001279/0.09524, allocations: 143.8 kB / 0.5097 GB, free: 4.477 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.00119/0.09643, allocations: 0.953 MB / 0.5106 GB, free: 3.516 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 2.538e-05/0.09645, allocations: 32 kB / 0.5107 GB, free: 3.484 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 3.91e-07/0.09645, allocations: 0 / 0.5107 GB, free: 3.484 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.0004368/0.09689, allocations: 388.7 kB / 0.511 GB, free: 2.977 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 4.879e-06/0.0969, allocations: 0 / 0.511 GB, free: 2.977 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 3.008e-05/0.09693, allocations: 51.88 kB / 0.5111 GB, free: 2.926 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 1.561e-05/0.09694, allocations: 7.938 kB / 0.5111 GB, free: 2.918 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.001037/0.09798, allocations: 0.8256 MB / 0.5119 GB, free: 2.094 MB / 382.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref reaction.substrates[2].u is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.4769503999850713] Failed to read output from testmodel.py, exit status != 0: 0.1053915960364975 0.279100771 0.192159676 Calling exit ...