Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_master_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001275/0.001275, allocations: 104.3 kB / 19.76 MB, free: 1.906 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001346/0.001346, allocations: 211.4 kB / 23.06 MB, free: 4.984 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.305/1.305, allocations: 230.6 MB / 256.9 MB, free: 7.738 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo): time 0.1232/0.1232, allocations: 23.99 MB / 337.3 MB, free: 10.8 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.1 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane") translateModel(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_master_Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.971e-05/1.971e-05, allocations: 2.281 kB / 472.7 MB, free: 6.809 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical master/Obsolete.mo:14335:7-14335:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.AcidBase.Dev.RedCellMembrane): time 0.08795/0.08797, allocations: 47.06 MB / 0.5075 GB, free: 7.809 MB / 382.1 MB Notification: Performance of NFInst.instExpressions: time 0.2848/0.3728, allocations: 106.1 MB / 0.6112 GB, free: 11.67 MB / 430.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.005062/0.3778, allocations: 95.25 kB / 0.6112 GB, free: 11.57 MB / 430.1 MB Notification: Performance of NFTyping.typeComponents: time 0.007149/0.385, allocations: 2.154 MB / 0.6133 GB, free: 9.426 MB / 430.1 MB Notification: Performance of NFTyping.typeBindings: time 0.03094/0.4159, allocations: 10.17 MB / 0.6233 GB, free: 15.31 MB / 446.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.04351/0.4594, allocations: 15.78 MB / 0.6387 GB, free: 15.52 MB / 462.1 MB Notification: Performance of NFFlatten.flatten: time 0.01662/0.4761, allocations: 12.48 MB / 0.6509 GB, free: 3 MB / 462.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.007084/0.4831, allocations: 4.608 MB / 0.6554 GB, free: 14.31 MB / 478.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.009006/0.4922, allocations: 5.546 MB / 0.6608 GB, free: 8.75 MB / 478.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.009649/0.5018, allocations: 5.368 MB / 0.666 GB, free: 3.363 MB / 478.1 MB Notification: Performance of NFPackage.collectConstants: time 0.003011/0.5048, allocations: 0.8828 MB / 0.6669 GB, free: 2.48 MB / 478.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.03762/0.5424, allocations: 13.02 MB / 0.6796 GB, free: 5.441 MB / 494.1 MB Notification: Performance of combineBinaries: time 0.0197/0.5621, allocations: 17.29 MB / 0.6965 GB, free: 4.004 MB / 0.4981 GB Notification: Performance of replaceArrayConstructors: time 0.009417/0.5715, allocations: 9.354 MB / 0.7056 GB, free: 10.56 MB / 0.5137 GB Notification: Performance of NFVerifyModel.verify: time 0.003385/0.5749, allocations: 0.7695 MB / 0.7064 GB, free: 9.793 MB / 0.5137 GB Notification: Performance of FrontEnd: time 0.001155/0.5761, allocations: 303.5 kB / 0.7067 GB, free: 9.496 MB / 0.5137 GB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 1818 (1814) * Number of variables: 1818 (1812) Notification: Performance of [SIM] Bindings: time 0.2604/0.8365, allocations: 41.2 MB / 0.7469 GB, free: 51.5 MB / 0.5137 GB Notification: Performance of [SIM] FunctionAlias: time 0.00932/0.8458, allocations: 7.059 MB / 0.7538 GB, free: 50.84 MB / 0.5137 GB Notification: Performance of [SIM] Early Inline: time 0.04291/0.8887, allocations: 40.27 MB / 0.7931 GB, free: 34.55 MB / 0.5137 GB Notification: Performance of [SIM] Simplify 1: time 0.007296/0.896, allocations: 4.177 MB / 0.7972 GB, free: 33.17 MB / 0.5137 GB Warning: NBAlias.setStartFixed: Alias set with conflicting unfixed start values detected. Use -d=dumprepl for more information. Notification: Performance of [SIM] Alias: time 0.0388/0.9348, allocations: 38.94 MB / 0.8352 GB, free: 13.42 MB / 0.5294 GB Notification: Performance of [SIM] Simplify 2: time 0.006605/0.9414, allocations: 3.715 MB / 0.8389 GB, free: 9.656 MB / 0.5294 GB Notification: Performance of [SIM] Remove Stream: time 0.002736/0.9442, allocations: 1.678 MB / 0.8405 GB, free: 7.953 MB / 0.5294 GB Notification: Performance of [SIM] Detect States: time 0.004446/0.9486, allocations: 3.898 MB / 0.8443 GB, free: 4.012 MB / 0.5294 GB Notification: Performance of [SIM] Events: time 0.001822/0.9504, allocations: 1.215 MB / 0.8455 GB, free: 2.805 MB / 0.5294 GB Notification: Performance of [SIM] Partitioning: time 0.007908/0.9584, allocations: 6.839 MB / 0.8522 GB, free: 12.05 MB / 0.545 GB Error: Internal error NBVariable.makeDummyState failed for $DER.H2O_E.SelfClustering_dG. " [Timeout remaining time 659] [Calling sys.exit(0), Time elapsed: 3.229033399024047] Failed to read output from testmodel.py, exit status != 0: 1.025322699046228 1.037579259 0.45812802 Calling exit ...