Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.SimpleReaction2.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001364/0.001364, allocations: 104.3 kB / 19.77 MB, free: 2.051 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001408/0.001408, allocations: 214.8 kB / 23.07 MB, free: 4.844 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.186/1.186, allocations: 230.7 MB / 256.9 MB, free: 7.727 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1099/0.1099, allocations: 23.89 MB / 337.2 MB, free: 10.9 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.SimpleReaction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.SimpleReaction2") translateModel(Chemical.Obsolete.Examples.SimpleReaction2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.SimpleReaction2") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.359e-05/1.359e-05, allocations: 2.281 kB / 472.4 MB, free: 6.988 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.SimpleReaction2): time 0.06211/0.06212, allocations: 25.51 MB / 497.9 MB, free: 13.62 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.0114/0.07352, allocations: 10.27 MB / 0.4963 GB, free: 3.309 MB / 366.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002466/0.07377, allocations: 15.88 kB / 0.4963 GB, free: 3.293 MB / 366.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0005173/0.07429, allocations: 230.2 kB / 0.4965 GB, free: 3.066 MB / 366.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001585/0.07587, allocations: 0.9969 MB / 0.4975 GB, free: 2.062 MB / 366.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.002194/0.07806, allocations: 1.526 MB / 0.499 GB, free: 0.5273 MB / 366.1 MB Notification: Performance of NFFlatten.flatten: time 0.001162/0.07923, allocations: 1.47 MB / 0.5004 GB, free: 15.05 MB / 382.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0006705/0.0799, allocations: 0.5693 MB / 0.501 GB, free: 14.46 MB / 382.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0005477/0.08044, allocations: 0.6273 MB / 0.5016 GB, free: 13.83 MB / 382.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.000616/0.08106, allocations: 0.5993 MB / 0.5022 GB, free: 13.23 MB / 382.1 MB Notification: Performance of NFPackage.collectConstants: time 0.000142/0.0812, allocations: 108 kB / 0.5023 GB, free: 13.12 MB / 382.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.001676/0.08288, allocations: 1.225 MB / 0.5035 GB, free: 11.9 MB / 382.1 MB Notification: Performance of combineBinaries: time 0.001507/0.08439, allocations: 2.079 MB / 0.5055 GB, free: 9.801 MB / 382.1 MB Notification: Performance of replaceArrayConstructors: time 0.0006759/0.08506, allocations: 1.176 MB / 0.5067 GB, free: 8.609 MB / 382.1 MB Notification: Performance of NFVerifyModel.verify: time 0.0001177/0.08518, allocations: 99.94 kB / 0.5068 GB, free: 8.512 MB / 382.1 MB Notification: Performance of FrontEnd: time 9.004e-05/0.08527, allocations: 39.84 kB / 0.5068 GB, free: 8.473 MB / 382.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 222 (220) * Number of variables: 222 (219) Notification: Performance of [SIM] Bindings: time 0.003893/0.08916, allocations: 4.952 MB / 0.5116 GB, free: 3.324 MB / 382.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.0006603/0.08982, allocations: 0.7317 MB / 0.5123 GB, free: 2.578 MB / 382.1 MB Notification: Performance of [SIM] Early Inline: time 0.1432/0.233, allocations: 4.17 MB / 0.5164 GB, free: 38.23 MB / 382.1 MB Notification: Performance of [SIM] Simplify 1: time 0.0007331/0.2338, allocations: 481.9 kB / 0.5169 GB, free: 38.08 MB / 382.1 MB Warning: NBAlias.setStartFixed: Alias set with conflicting unfixed start values detected. Use -d=dumprepl for more information. Notification: Performance of [SIM] Alias: time 0.004177/0.2379, allocations: 4.42 MB / 0.5212 GB, free: 37.06 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0003493/0.2383, allocations: 319.6 kB / 0.5215 GB, free: 36.94 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 0.0001359/0.2384, allocations: 176.3 kB / 0.5217 GB, free: 36.87 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.0003014/0.2387, allocations: 397.2 kB / 0.522 GB, free: 36.75 MB / 382.1 MB Notification: Performance of [SIM] Events: time 0.0001119/0.2388, allocations: 90.61 kB / 0.5221 GB, free: 36.75 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.0005752/0.2394, allocations: 0.6675 MB / 0.5228 GB, free: 36.67 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.00155/0.241, allocations: 1.508 MB / 0.5243 GB, free: 36.5 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.0007557/0.2417, allocations: 1.08 MB / 0.5253 GB, free: 36.43 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.000838/0.2425, allocations: 0.7106 MB / 0.526 GB, free: 36.11 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.001418/0.244, allocations: 1.925 MB / 0.5279 GB, free: 35.11 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 6.324e-05/0.244, allocations: 43.42 kB / 0.5279 GB, free: 35.08 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.0001676/0.2442, allocations: 304.5 kB / 0.5282 GB, free: 34.92 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.001951/0.2461, allocations: 1.968 MB / 0.5301 GB, free: 34.5 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 2.42e-05/0.2462, allocations: 58.69 kB / 0.5302 GB, free: 34.45 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 4.2e-07/0.2462, allocations: 0 / 0.5302 GB, free: 34.45 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.000478/0.2467, allocations: 0.5129 MB / 0.5307 GB, free: 34.33 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 5.59e-06/0.2467, allocations: 2.375 kB / 0.5307 GB, free: 34.33 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 2.956e-05/0.2467, allocations: 105.6 kB / 0.5308 GB, free: 34.25 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 1.035e-05/0.2467, allocations: 6.625 kB / 0.5308 GB, free: 34.25 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.001756/0.2485, allocations: 1.857 MB / 0.5326 GB, free: 33.73 MB / 382.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref reaction.substrates[2].u is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.222749021020718] Failed to read output from testmodel.py, exit status != 0: 0.25584194401744753 0.26305584299999996 0.17597729899999995 Calling exit ...