Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001588/0.001588, allocations: 104.3 kB / 19.76 MB, free: 1.906 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001589/0.001589, allocations: 213.4 kB / 23.06 MB, free: 4.984 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.28/1.28, allocations: 230.7 MB / 256.9 MB, free: 7.941 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1214/0.1214, allocations: 23.89 MB / 337.2 MB, free: 10.93 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2") translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.716e-05/1.716e-05, allocations: 6.078 kB / 472.4 MB, free: 6.988 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:14337:7-14337:66:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.StandardElectrochemicalCell2): time 0.06942/0.06944, allocations: 27.15 MB / 499.6 MB, free: 11.95 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.02011/0.08955, allocations: 16.06 MB / 0.5036 GB, free: 11.83 MB / 382.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0007678/0.09032, allocations: 23.81 kB / 0.5036 GB, free: 11.81 MB / 382.1 MB Notification: Performance of NFTyping.typeComponents: time 0.00103/0.09135, allocations: 424.7 kB / 0.504 GB, free: 11.39 MB / 382.1 MB Notification: Performance of NFTyping.typeBindings: time 0.001824/0.09317, allocations: 0.8069 MB / 0.5048 GB, free: 10.58 MB / 382.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.006306/0.09948, allocations: 2.861 MB / 0.5076 GB, free: 7.699 MB / 382.1 MB Notification: Performance of NFFlatten.flatten: time 0.001994/0.1015, allocations: 1.826 MB / 0.5094 GB, free: 5.867 MB / 382.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.0009312/0.1024, allocations: 0.7278 MB / 0.5101 GB, free: 5.121 MB / 382.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0008128/0.1032, allocations: 0.7868 MB / 0.5108 GB, free: 4.332 MB / 382.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0008407/0.1041, allocations: 0.7274 MB / 0.5116 GB, free: 3.602 MB / 382.1 MB Notification: Performance of NFPackage.collectConstants: time 0.0001953/0.1043, allocations: 136 kB / 0.5117 GB, free: 3.469 MB / 382.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.003466/0.1077, allocations: 1.704 MB / 0.5134 GB, free: 1.762 MB / 382.1 MB Notification: Performance of combineBinaries: time 0.163/0.2708, allocations: 2.754 MB / 0.516 GB, free: 33.33 MB / 382.1 MB Notification: Performance of replaceArrayConstructors: time 0.001472/0.2722, allocations: 1.669 MB / 0.5177 GB, free: 32.8 MB / 382.1 MB Notification: Performance of NFVerifyModel.verify: time 0.0002884/0.2725, allocations: 134.3 kB / 0.5178 GB, free: 32.8 MB / 382.1 MB Notification: Performance of FrontEnd: time 0.0002194/0.2727, allocations: 71.44 kB / 0.5179 GB, free: 32.8 MB / 382.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 303 (297) * Number of variables: 303 (294) Notification: Performance of [SIM] Bindings: time 0.004685/0.2774, allocations: 7 MB / 0.5247 GB, free: 29.97 MB / 382.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.0008521/0.2783, allocations: 0.959 MB / 0.5256 GB, free: 29.88 MB / 382.1 MB Notification: Performance of [SIM] Early Inline: time 0.007179/0.2855, allocations: 7.382 MB / 0.5328 GB, free: 27.84 MB / 382.1 MB Notification: Performance of [SIM] Simplify 1: time 0.001429/0.2869, allocations: 1.071 MB / 0.5339 GB, free: 27.52 MB / 382.1 MB Notification: Performance of [SIM] Alias: time 0.00654/0.2934, allocations: 6.548 MB / 0.5403 GB, free: 24.47 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0007431/0.2942, allocations: 0.7714 MB / 0.541 GB, free: 24.23 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 0.0001997/0.2944, allocations: 269.9 kB / 0.5413 GB, free: 24.08 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.0004107/0.2948, allocations: 0.5916 MB / 0.5419 GB, free: 23.73 MB / 382.1 MB Notification: Performance of [SIM] Events: time 0.0001836/0.295, allocations: 195.1 kB / 0.5421 GB, free: 23.66 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.0008752/0.2958, allocations: 1.338 MB / 0.5434 GB, free: 22.86 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.001509/0.2974, allocations: 1.786 MB / 0.5451 GB, free: 22.07 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.001114/0.2985, allocations: 1.908 MB / 0.547 GB, free: 21.22 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.001577/0.3, allocations: 1.608 MB / 0.5485 GB, free: 20.43 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.001925/0.302, allocations: 3.578 MB / 0.552 GB, free: 17.91 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 8.847e-05/0.3021, allocations: 61.33 kB / 0.5521 GB, free: 17.86 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.0002826/0.3023, allocations: 0.5514 MB / 0.5526 GB, free: 17.45 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.002301/0.3046, allocations: 2.458 MB / 0.555 GB, free: 16.58 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 0.0001189/0.3048, allocations: 160.4 kB / 0.5552 GB, free: 16.49 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 1.152e-06/0.3048, allocations: 3.984 kB / 0.5552 GB, free: 16.49 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.001064/0.3058, allocations: 1.489 MB / 0.5567 GB, free: 15.14 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 7.775e-06/0.3058, allocations: 4.656 kB / 0.5567 GB, free: 15.14 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 0.0001567/0.306, allocations: 244.9 kB / 0.5569 GB, free: 14.92 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 2.248e-05/0.306, allocations: 17.98 kB / 0.5569 GB, free: 14.91 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.003797/0.3098, allocations: 4.884 MB / 0.5617 GB, free: 10.52 MB / 382.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref electrodeReaction.rr is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.4820678409887478] Failed to read output from testmodel.py, exit status != 0: 0.3174687759601511 0.32661618299999995 0.051066802 Calling exit ...