Running: ./testmodel.py --libraries=/home/hudson/saved_omc/libraries/.openmodelica/libraries --ompython_omhome=/usr Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG.conf.json loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo): time 0.001467/0.001467, allocations: 104.3 kB / 19.77 MB, free: 2.051 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo): time 0.001561/0.001561, allocations: 214.9 kB / 23.07 MB, free: 4.844 MB / 14.72 MB " [Timeout remaining time 180] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo): time 1.305/1.305, allocations: 230.7 MB / 256.9 MB, free: 7.719 MB / 206.1 MB " [Timeout remaining time 179] loadFile("/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo", uses=false) [Timeout 180] "Notification: Performance of loadFile(/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo): time 0.1229/0.1229, allocations: 23.87 MB / 337.2 MB, free: 10.9 MB / 270.1 MB " [Timeout remaining time 180] Using package Chemical with version 2.0.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/package.mo) Using package Modelica with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Modelica 4.1.0+maint.om/package.mo) Using package Complex with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/Complex 4.1.0+maint.om/package.mo) Using package ModelicaServices with version 4.1.0 (/home/hudson/saved_omc/libraries/.openmodelica/libraries/ModelicaServices 4.1.0+maint.om/package.mo) Running command: translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") translateModel(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG,tolerance=1e-06,outputFormat="empty",numberOfIntervals=2500,variableFilter="",fileNamePrefix="Chemical_Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG") [Timeout 660] "Notification: Performance of FrontEnd - Absyn->SCode: time 1.922e-05/1.922e-05, allocations: 6.219 kB / 472.4 MB, free: 6.98 MB / 334.1 MB [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Warning: An inner declaration for outer component system could not be found and was automatically generated. [/home/hudson/saved_omc/libraries/.openmodelica/libraries/Chemical 2.0.0/Obsolete.mo:12638:6-12638:65:writable] Notification: The diagnostics message for the missing inner is: Your model is using an outer \"system\" component but an inner \"system\" component is not defined. For simulation drag Modelica.Fluid.System into your model to specify system properties. Notification: Performance of NFInst.instantiate(Chemical.Obsolete.Examples.CheckSubstancesData.SimpleReaction2_Get_DfG): time 0.06493/0.06495, allocations: 23.85 MB / 496.3 MB, free: 15.26 MB / 366.1 MB Notification: Performance of NFInst.instExpressions: time 0.006918/0.07187, allocations: 5.565 MB / 0.4901 GB, free: 9.676 MB / 366.1 MB Notification: Performance of NFInst.updateImplicitVariability: time 0.0002536/0.07212, allocations: 11.88 kB / 0.4901 GB, free: 9.664 MB / 366.1 MB Notification: Performance of NFTyping.typeComponents: time 0.0004252/0.07255, allocations: 150.8 kB / 0.4903 GB, free: 9.516 MB / 366.1 MB Notification: Performance of NFTyping.typeBindings: time 0.0005584/0.0731, allocations: 258 kB / 0.4905 GB, free: 9.262 MB / 366.1 MB Notification: Performance of NFTyping.typeClassSections: time 0.00187/0.07497, allocations: 0.9783 MB / 0.4915 GB, free: 8.277 MB / 366.1 MB Notification: Performance of NFFlatten.flatten: time 0.00057/0.07554, allocations: 0.5607 MB / 0.492 GB, free: 7.715 MB / 366.1 MB Notification: Performance of NFFlatten.resolveConnections: time 0.000266/0.07581, allocations: 156.7 kB / 0.4922 GB, free: 7.559 MB / 366.1 MB Notification: Performance of NFEvalConstants.evaluate: time 0.0003167/0.07613, allocations: 291.1 kB / 0.4924 GB, free: 7.273 MB / 366.1 MB Notification: Performance of NFSimplifyModel.simplify: time 0.0003335/0.07646, allocations: 251 kB / 0.4927 GB, free: 7.027 MB / 366.1 MB Notification: Performance of NFPackage.collectConstants: time 6.259e-05/0.07652, allocations: 28 kB / 0.4927 GB, free: 7 MB / 366.1 MB Notification: Performance of NFFlatten.collectFunctions: time 0.0008989/0.07742, allocations: 0.5264 MB / 0.4932 GB, free: 6.473 MB / 366.1 MB Notification: Performance of combineBinaries: time 0.0006568/0.07808, allocations: 0.7892 MB / 0.494 GB, free: 5.676 MB / 366.1 MB Notification: Performance of replaceArrayConstructors: time 0.0003284/0.07841, allocations: 0.5014 MB / 0.4945 GB, free: 5.168 MB / 366.1 MB Notification: Performance of NFVerifyModel.verify: time 5.688e-05/0.07846, allocations: 36 kB / 0.4945 GB, free: 5.133 MB / 366.1 MB Notification: Performance of FrontEnd: time 7.337e-05/0.07854, allocations: 31.89 kB / 0.4945 GB, free: 5.102 MB / 366.1 MB Notification: Model statistics after passing the front-end and creating the data structures used by the back-end: * Number of equations: 65 (63) * Number of variables: 65 (62) Notification: Performance of [SIM] Bindings: time 0.001875/0.08041, allocations: 2.081 MB / 0.4966 GB, free: 2.883 MB / 366.1 MB Notification: Performance of [SIM] FunctionAlias: time 0.0004413/0.08085, allocations: 375.4 kB / 0.4969 GB, free: 2.488 MB / 366.1 MB Notification: Performance of [SIM] Early Inline: time 0.001974/0.08283, allocations: 1.737 MB / 0.4986 GB, free: 0.7344 MB / 366.1 MB Notification: Performance of [SIM] Simplify 1: time 0.0002669/0.08309, allocations: 196.3 kB / 0.4988 GB, free: 0.4922 MB / 366.1 MB Notification: Performance of [SIM] Alias: time 0.001681/0.08478, allocations: 1.364 MB / 0.5001 GB, free: 14.83 MB / 382.1 MB Notification: Performance of [SIM] Simplify 2: time 0.0001705/0.08495, allocations: 126.3 kB / 0.5003 GB, free: 14.66 MB / 382.1 MB Notification: Performance of [SIM] Remove Stream: time 7.897e-05/0.08502, allocations: 72.39 kB / 0.5003 GB, free: 14.57 MB / 382.1 MB Notification: Performance of [SIM] Detect States: time 0.0001726/0.0852, allocations: 172.6 kB / 0.5005 GB, free: 14.34 MB / 382.1 MB Notification: Performance of [SIM] Events: time 4.273e-05/0.08524, allocations: 35.91 kB / 0.5005 GB, free: 14.31 MB / 382.1 MB Notification: Performance of [SIM] Partitioning: time 0.0003976/0.08564, allocations: 377.7 kB / 0.5009 GB, free: 13.82 MB / 382.1 MB Notification: Performance of [SIM] Causalize: time 0.0007165/0.08635, allocations: 0.5615 MB / 0.5014 GB, free: 13.13 MB / 382.1 MB Notification: Performance of [SIM] After Index Reduction Inline: time 0.0003077/0.08666, allocations: 351.6 kB / 0.5018 GB, free: 12.79 MB / 382.1 MB Notification: Performance of [INI] Simplify: time 0.0006119/0.08727, allocations: 472.2 kB / 0.5022 GB, free: 12.26 MB / 382.1 MB Notification: Performance of [INI] Inline: time 0.0007072/0.08798, allocations: 0.7541 MB / 0.503 GB, free: 11.5 MB / 382.1 MB Notification: Performance of [INI] Partitioning: time 4.142e-05/0.08802, allocations: 22.75 kB / 0.503 GB, free: 11.47 MB / 382.1 MB Notification: Performance of [INI] Cleanup: time 0.000105/0.08813, allocations: 111.8 kB / 0.5031 GB, free: 11.36 MB / 382.1 MB Notification: Performance of [INI] Causalize: time 0.000982/0.08911, allocations: 0.772 MB / 0.5038 GB, free: 10.59 MB / 382.1 MB Notification: Performance of [INI] Tearing: time 2.346e-05/0.08913, allocations: 28 kB / 0.5039 GB, free: 10.56 MB / 382.1 MB Notification: Performance of [SIM] Initialization: time 3.4e-07/0.08913, allocations: 0 / 0.5039 GB, free: 10.56 MB / 382.1 MB Notification: Performance of [SIM] DAE-Mode: time 0.0003716/0.0895, allocations: 330.4 kB / 0.5042 GB, free: 10.12 MB / 382.1 MB Notification: Performance of [SIM] Remove Dummies: time 6.963e-06/0.08951, allocations: 8 kB / 0.5042 GB, free: 10.11 MB / 382.1 MB Notification: Performance of [SIM] Tearing: time 2.669e-05/0.08954, allocations: 43.88 kB / 0.5042 GB, free: 10.07 MB / 382.1 MB Notification: Performance of [SIM] Categorize: time 1.491e-05/0.08955, allocations: 7.938 kB / 0.5042 GB, free: 10.06 MB / 382.1 MB Notification: Performance of [SIM] Solve: time 0.0009287/0.09048, allocations: 0.6852 MB / 0.5049 GB, free: 9.371 MB / 382.1 MB Error: Internal error NBJacobian.SparsityColoring.PartialD2ColoringAlgC.getIndices failed because cref reaction.substrates[2].u is neither a seed nor a partial candidate! " [Timeout remaining time 660] [Calling sys.exit(0), Time elapsed: 2.4481190809747204] Failed to read output from testmodel.py, exit status != 0: 0.09770763100823388 0.26953903099999993 0.18845141199999996 Calling exit ...